View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6606_low_3 (Length: 515)
Name: NF6606_low_3
Description: NF6606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6606_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 13 - 496
Target Start/End: Complemental strand, 45142374 - 45141891
Alignment:
| Q |
13 |
cacagacacaaaataaaagattacagaaagtaaagatgaaaacacgatgtttggatcaatttgaatcctacatcctcactgaggtcgatctcatcactat |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45142374 |
cacacacacaaaataaaagattacagaaagtaaagatgaaaacacgatgtttggatcaatttgaatcctacatcctcactgaggtcgatctcatcactat |
45142275 |
T |
|
| Q |
113 |
gatcaagaattacaaggctttcctttctaatagtaggaacgcattccaaatttacaacaaacttagaaacagaatgtaggatatttatcacattccaaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45142274 |
gatcaagaattacaaggctttcctttctaatagtaggaacgcattccaaatttacaacaaacttagaaacagaatgtaggatatttatcacattccaaat |
45142175 |
T |
|
| Q |
213 |
tggaccgcttattttttaatagtagtaggaacacaactattaataacagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattctt |
312 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45142174 |
tggaccacttattttttaatagtagtaggcacacaactattaataacagaaaagcctccatcgaccaccaaattgtgtccactaatataagccgattctt |
45142075 |
T |
|
| Q |
313 |
ccgatgcaagaaagagagcagcttctgcaatatgcgtagcctttagtgtaattcctttcaaattagcagaatctttcatattagcttcaacttcactcat |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45142074 |
ccgatgcaagaaagagagcagcttctgcaatatgcgtagcctttagtgtaattcctttcaaattagcagaatctttcatattagcttcaactttactcat |
45141975 |
T |
|
| Q |
413 |
ctccatattcagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccgtaagctccaag |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45141974 |
ctccatattcagtgctctacatgcaagaggcgtggcaacaccatacggtgagattgaattgactctaattccgtaagctccaag |
45141891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 258 - 496
Target Start/End: Complemental strand, 45152774 - 45152536
Alignment:
| Q |
258 |
acagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtagccttta |
357 |
Q |
| |
|
|||| ||||||||||||||||||||| || ||||||||||||||||||||||| || || |||||||| | |||||||||||||||||| |||||||| |
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| T |
45152774 |
acagtgaagcctccatcgaccaccaagttttgtccactaatataagccgattcatcggaagcaagaaacatagcagcttctgcaatatgaccagccttta |
45152675 |
T |
|
| Q |
358 |
gtgtaattcctttcaaattagcagaatctttcatattagcttcaacttcactcatctccatattcagtgctctacatgcaagaggcgtggcaacaccatt |
457 |
Q |
| |
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|||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||| | ||||||||||||||| |||||| |||||||||||| |
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| T |
45152674 |
gtgtaattcctttcaaattagcagaatcattcccaatagcttcaacttcactcacatccttgttcagtgctctacataaaagaggtgtggcaacaccaga |
45152575 |
T |
|
| Q |
458 |
cggtgagattgaattgactctaattccgtaagctccaag |
496 |
Q |
| |
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||||| |||||||| ||||| ||||| ||||||||||| |
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| T |
45152574 |
aggtgaaattgaattaactcttattccataagctccaag |
45152536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 252 - 496
Target Start/End: Complemental strand, 38256599 - 38256355
Alignment:
| Q |
252 |
ttaataacagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtag |
351 |
Q |
| |
|
||||| || |||||||||||||| || ||||| |||||||||||||||||||| ||||| || ||||||||||| | ||||| ||||||||||| | || |
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|
| T |
38256599 |
ttaatgactgagaagcctccatcaacgaccaagttgtgtccactaatataagcagattcatcagatgcaagaaacaaagcagtctctgcaatatgagcag |
38256500 |
T |
|
| Q |
352 |
cctttagtgtaattcctttcaaattagcagaatctttcatattagcttcaacttcactcatctccatattcagtgctctacatgcaagaggcgtggcaac |
451 |
Q |
| |
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|||| | ||||||||| | |||||||||| |||| | |||||||||||||||| | |||| | ||||||||||||||||||||| || ||||| |
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| T |
38256499 |
ccttcaatgtaattccctgcaaattagcataatcaaggccaacagcttcaacttcactcggcaccatgtccagtgctctacatgcaagaggtgtagcaac |
38256400 |
T |
|
| Q |
452 |
accattcggtgagattgaattgactctaattccgtaagctccaag |
496 |
Q |
| |
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| ||| |||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
38256399 |
agcatagggtgagattgaattgactctgattccataagctccaag |
38256355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 34530943 - 34530995
Alignment:
| Q |
57 |
cgatgtttggatcaa-tttgaatcctacatcctcactgaggtcgatctcatca |
108 |
Q |
| |
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|||| |||||||||| |||||||||||||||||| ||||||||||||||||| |
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|
| T |
34530943 |
cgatatttggatcaactttgaatcctacatcctcgttgaggtcgatctcatca |
34530995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 12700681 - 12700778
Alignment:
| Q |
258 |
acagagaagcctccatcgaccaccaaattgtgtccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtagcctt |
355 |
Q |
| |
|
|||||||| || ||||| || |||||||| || |||||||| ||| | | ||| || || |||||||| | ||| ||||||||||||||| ||||||| |
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| T |
12700681 |
acagagaaaccaccatcaactaccaaattatgaccactaatgtaaacagcttcatcagaagcaagaaacaaagctgcttctgcaatatgcttagcctt |
12700778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 119
Target Start/End: Original strand, 29361452 - 29361487
Alignment:
| Q |
84 |
atcctcactgaggtcgatctcatcactatgatcaag |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
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|
| T |
29361452 |
atcctcactgaggtcgatcccatcactatgatcaag |
29361487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 119
Target Start/End: Complemental strand, 30270658 - 30270623
Alignment:
| Q |
84 |
atcctcactgaggtcgatctcatcactatgatcaag |
119 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| |
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| T |
30270658 |
atcctcactgaggtcgatcccatcactatgatcaag |
30270623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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