View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6606_low_4 (Length: 434)
Name: NF6606_low_4
Description: NF6606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6606_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Original strand, 26887075 - 26887479
Alignment:
| Q |
19 |
gtttaatgtttaaataatggatgctcccttgtgatgcctgactcatttgagttcatgttttctaatgtttttatcttaacttgcagctcaagaacaattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26887075 |
gtttaatgtttaaataatggatgctcccttgtgatgcctgactcatttgagttcatgtcttctaatgtttttatcttaacttgcagctcaagaacaattt |
26887174 |
T |
|
| Q |
119 |
tggaaaagtatttgaaacctgcagtctctattgctgaggatgtgaaaagtacagataagaaggccatggaaaagaaatgtcatacccattttcatcttgc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26887175 |
tggaaaagtatttgaaacctgcagtctctattgctgaggatgtgaaaagtacagataagaaggccatggaaaagaaatgtcatacccattttcatcttgc |
26887274 |
T |
|
| Q |
219 |
acactatactgatgctctatttaggagtcatgaagaaaaacttgattctaatggtggaaggatcaaagagcaaaatgtagctaagtttatatcaacacta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26887275 |
acactatactgatgctctatttaggagtcatgaagaaagacttgattctaatggtggaaggatcaaagagcaaaatgtagctaagtttatatcaacacta |
26887374 |
T |
|
| Q |
319 |
gctggttgaaacaatgaaaaactaatggtcatggcacatgctacttcaatagacactacactacactagcttttgttgctgttgtcaatcaaattggtga |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26887375 |
gctggttgaaacaatgaaaaactaatggtcatggcgcatgctacttcaatagacactacactacactagcttttgttgctgttgttaatcaaattggtgg |
26887474 |
T |
|
| Q |
419 |
tgatg |
423 |
Q |
| |
|
||||| |
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|
| T |
26887475 |
tgatg |
26887479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Complemental strand, 8944584 - 8944180
Alignment:
| Q |
19 |
gtttaatgtttaaataatggatgctcccttgtgatgcctgactcatttgagttcatgttttctaatgtttttatcttaacttgcagctcaagaacaattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8944584 |
gtttaatgtttaaataatggatgctcccctgtgatgcctgactcatttgagttcatgtcttctaatgtttttatcttaacttgcagctcaagaacaattt |
8944485 |
T |
|
| Q |
119 |
tggaaaagtatttgaaacctgcagtctctattgctgaggatgtgaaaagtacagataagaaggccatggaaaagaaatgtcatacccattttcatcttgc |
218 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
8944484 |
tggagaagtatttgaaacctacagtttctattgctgaggatgtgaaaagtacagataagaaggccatggaaaagaaatgtaatacccattttcatcttgc |
8944385 |
T |
|
| Q |
219 |
acactatactgatgctctatttaggagtcatgaagaaaaacttgattctaatggtggaaggatcaaagagcaaaatgtagctaagtttatatcaacacta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8944384 |
acactatactgatgctctatttaggagtcatgaagaaatacttgattctaatggtggaaggatcaaagagcaaaatgtagctaagtttatatcaacacta |
8944285 |
T |
|
| Q |
319 |
gctggttgaaacaatgaaaaactaatggtcatggcacatgctacttcaatagacactacactacactagcttttgttgctgttgtcaatcaaattggtga |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
8944284 |
gctggttgaaacaatgaaaaactaatggtcatggcacatgctacttcaatagacactacactacactagcttttgttgctgttgttaatcaaattggtgg |
8944185 |
T |
|
| Q |
419 |
tgatg |
423 |
Q |
| |
|
||||| |
|
|
| T |
8944184 |
tgatg |
8944180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Complemental strand, 51855349 - 51854945
Alignment:
| Q |
19 |
gtttaatgtttaaataatggatgctcccttgtgatgcctgactcatttgagttcatgttttctaatgtttttatcttaacttgcagctcaagaacaattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
51855349 |
gtttaatgtttaaataatggatgctcccttgtgatgcctgactcatttgagttcatgtcttcttttgtttttatcttaacttgcagctcaagaacaattt |
51855250 |
T |
|
| Q |
119 |
tggaaaagtatttgaaacctgcagtctctattgctgaggatgtgaaaagtacagataagaaggccatggaaaagaaatgtcatacccattttcatcttgc |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51855249 |
tggataagtatttgaaacctgcagtctctattgctgaggatgtgaaaagtacagataagaaggccatggaaaagaaatgtcatacccattttcatcttgc |
51855150 |
T |
|
| Q |
219 |
acactatactgatgctctatttaggagtcatgaagaaaaacttgattctaatggtggaaggatcaaagagcaaaatgtagctaagtttatatcaacacta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51855149 |
acactatactgatgctctatttaggagtcatgaagaaagacttgattctaatggtggaaggatcaaagagcaaaatgtagctaagtttatatcaacacta |
51855050 |
T |
|
| Q |
319 |
gctggttgaaacaatgaaaaactaatggtcatggcacatgctacttcaatagacactacactacactagcttttgttgctgttgtcaatcaaattggtga |
418 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
51855049 |
gctggttgaaaaaatgaaaaactaatggtcatggcacatgctacttcaatagacactaccctacactagcttttgttgctgttgttaatcaaattggtgg |
51854950 |
T |
|
| Q |
419 |
tgatg |
423 |
Q |
| |
|
||||| |
|
|
| T |
51854949 |
tgatg |
51854945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 35043132 - 35043384
Alignment:
| Q |
19 |
gtttaatgtttaaataatggatgctcccttgtgatgcctgactcatttgagttcatgttttctaatgtttttatcttaacttgcagctcaagaacaattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
35043132 |
gtttaatgtttaaataatggatgctcccttgtgatgcctgactcatttgagttcatgtcttctcctgtttttatcttaacttgcagctcaagaacaattt |
35043231 |
T |
|
| Q |
119 |
tggaaaagtatttgaaacctgcagtctctattgctgaggatgtgaaaagtacagataagaaggccatggaaaagaaatgtcatacccattttcatcttgc |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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|
| T |
35043232 |
tggagaagtatttgaaacctgcagtctctattgctgaggatgtgaaaagtacagataagaaggccatggaaaagaaatgtcaaactcattttcatcttgc |
35043331 |
T |
|
| Q |
219 |
acactatactgatgctctatttaggagtcatgaagaaaaacttgattctaatg |
271 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||| ||||||||| |
|
|
| T |
35043332 |
acactatactgatgctctatttaggagccatgaagaaagacttaattctaatg |
35043384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 269 - 423
Target Start/End: Complemental strand, 21989075 - 21988923
Alignment:
| Q |
269 |
atggtggaaggatcaaagagcaaaatgtagctaagtttatatcaacactagctggttgaaacaatgaaaaactaatggtcatggcacatgctacttcaat |
368 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| | |||||||| ||||| |||||| ||||||||||| |
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|
| T |
21989075 |
atggtggaaggatcaaagagtcaaatgtagctaagtttatatcagcactagctggtggaaactaagaaaaactgatggttatggcatatgctacttcagc |
21988976 |
T |
|
| Q |
369 |
agacactacactacactagcttttgttgctgttgtcaatcaaattggtgatgatg |
423 |
Q |
| |
|
|||||| || |||||| |||| ||||||||||| ||||||| ||||| ||||| |
|
|
| T |
21988975 |
ggacact--acgacactaactttagttgctgttgttaatcaaactggtggtgatg |
21988923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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