View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6606_low_5 (Length: 362)
Name: NF6606_low_5
Description: NF6606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6606_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 346
Target Start/End: Complemental strand, 7036106 - 7035773
Alignment:
| Q |
13 |
tcatcaaacatacctcaatcatgcattaacttgtagttgtactagacataatgtataggaaatagaaataataatgaatttaaaatactgtaaaatttct |
112 |
Q |
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| T |
7036106 |
tcatcaaacatacctcaatcatgcattaacttgtaggtgtactagacataatgtataggaaatagaaataataatgaatttaaaatactgtaaaatttct |
7036007 |
T |
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| Q |
113 |
tacaaaatactaagcttgcttgattataatatataggttgtgttaatactttctcccaattaatattacatgaaatagataaaaagataaatcccacaag |
212 |
Q |
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| T |
7036006 |
tacaaaatactaagcttgcttgattataatatataggttgtgttaatactttctcccaattaatattacatgaaatagataaaaagataaatcccacaag |
7035907 |
T |
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| Q |
213 |
taaacacaactcaataataagcatcaaggtttccttatcattcgcttcatccatgttttcgtccttttctccctagctgttctgctttgtcatacaaacc |
312 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
7035906 |
taaacacaacccaataataagcatcaaggtttccttatcattcgcttcatccatgttttcgtccttttctccctagctcttccgctttgtcatacaaacc |
7035807 |
T |
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| Q |
313 |
ttgattacaagaagtcaaaatcatatcagggaca |
346 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
7035806 |
ttgattacaagaagtcaaaatcatatcagggaca |
7035773 |
T |
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