View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6606_low_8 (Length: 234)
Name: NF6606_low_8
Description: NF6606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6606_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 21433505 - 21433306
Alignment:
| Q |
20 |
ctttgcctatgctccaatacaaagagtctacctctggcgatatctattgtttcatcatatataaaaagccataaaaatccagaccatcaagaaagagtcg |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21433505 |
ctttgcctatgctccaatacgaagagtctacctctggcgatatctattgtttcatcatatataaaaagccataaaaatccagaccatcaagaaagagtcg |
21433406 |
T |
|
| Q |
120 |
taaggaaattcactcatgaggatgatgctagttttaggagatgaatctactctaataaatgagtttgaaataccctaattctacttctatgcgatgatgt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21433405 |
taaggaaattcactcatgaggatgatgctagttttaggagatgaatctactctaataaatgagtttgaaataccctaattctacttctatgtgatgatgt |
21433306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 75 - 207
Target Start/End: Complemental strand, 27152300 - 27152167
Alignment:
| Q |
75 |
catatataaaaagccataaaaatccagaccatcaagaaagagtcgtaaggaaattcactcatgaggatgatgctagttttaggagatgaatctactcta- |
173 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| |
|
|
| T |
27152300 |
catatataaaaagccataaaaacccagacaatcaagaaagagttgtaaggaaattcactcatgaggatggtgctatttttaggagatgaatttactctat |
27152201 |
T |
|
| Q |
174 |
ataaatgagtttgaaataccctaattctacttct |
207 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
27152200 |
ataaatgagtttgaaatgccctaattctacttct |
27152167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University