View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6607_high_1 (Length: 588)
Name: NF6607_high_1
Description: NF6607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6607_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 18 - 575
Target Start/End: Complemental strand, 40063959 - 40063401
Alignment:
| Q |
18 |
catatgagcttttcttgggattgagtctttacttggccgatgataagtttatatggatgaaattcggagcttaactcattacataaaaatttaaataann |
117 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||||| |||||||| ||||||||| ||||||||||||| |||||||||||| ||||| |
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| T |
40063959 |
catatgagcttttcttgagattgagtctttacttgaccgatgataaatttatatgaatgaaattcagagcttaactcataacataaaaatttgaataatt |
40063860 |
T |
|
| Q |
118 |
nnnnnaagagaacaaaaatcataatccaatacatgtccttattattaa-taaataataatgtcaactataaaattcttttcattttatgtatatttggag |
216 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
40063859 |
tttttaagataacaaaaatcataatccaatagatgtccttattattaaataaataataatgtcaactataaaattcttttcatttattgtatattttgag |
40063760 |
T |
|
| Q |
217 |
tgatattttgcctctattttgacattcatataactaatgacacatcatcaaagcaaagttagtaccaattccaaccccagcctgcagatgagtgagtttt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063759 |
tgatattttgcctctattttgacattcatataactaatgacacatcatcaaagcaaagttagtaccaattccaaccccagcctgcagatgagtgagtttt |
40063660 |
T |
|
| Q |
317 |
gccaaactagcacgcctcaatataaactgtcccactcccttcacatgtccttcactctctaccatcctttcatcccatacttttctcggttcaccccctc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
40063659 |
gccaaactagcacgcctcaatataaactgtcccactcccttcacatgtccttcactctctaccatcctttcatcccatacttttctctgttca-cccctc |
40063561 |
T |
|
| Q |
417 |
actccactattgcaaataaatcatcttaatacccacataacaattcatatcatccttcaccattctcattaatag-taatagtatttctcatttacgctt |
515 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40063560 |
actccactattgcaaataaaccatcttaatacccacataacaattcatatcatccttcaccattctcattaatagttaatagtatttctcatttacgctt |
40063461 |
T |
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| Q |
516 |
cagtagtgttggtcacatccattgattcattgcgtgcgtcagtgtatatatatgtaagta |
575 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063460 |
cagtagtgttggtcacatccattgattcattgcgtgcgtcagtgtatatatatgtaagta |
40063401 |
T |
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