View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6607_high_3 (Length: 518)

Name: NF6607_high_3
Description: NF6607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6607_high_3
NF6607_high_3
[»] chr3 (5 HSPs)
chr3 (109-500)||(20593768-20594163)
chr3 (119-477)||(4695846-4696208)
chr3 (1-102)||(20599591-20599692)
chr3 (440-495)||(13796301-13796356)
chr3 (124-166)||(13795979-13796021)
[»] chr6 (3 HSPs)
chr6 (11-491)||(5154349-5154830)
chr6 (391-500)||(22841381-22841490)
chr6 (391-495)||(15525906-15526010)
[»] chr4 (2 HSPs)
chr4 (11-492)||(31233681-31234166)
chr4 (391-492)||(23970389-23970489)
[»] chr1 (2 HSPs)
chr1 (92-259)||(48156285-48156452)
chr1 (124-477)||(23418975-23419332)
[»] scaffold0102 (1 HSPs)
scaffold0102 (119-477)||(2695-3057)
[»] chr5 (2 HSPs)
chr5 (124-360)||(28583945-28584181)
chr5 (442-492)||(28584267-28584317)
[»] chr7 (1 HSPs)
chr7 (391-500)||(14232887-14232996)
[»] chr2 (1 HSPs)
chr2 (172-352)||(37174924-37175104)
[»] chr8 (1 HSPs)
chr8 (436-481)||(13470719-13470764)


Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 109 - 500
Target Start/End: Complemental strand, 20594163 - 20593768
Alignment:
Q  109 tgtactgcgtcttcgtttcttgctgcattaccatagagaaaactctatttatttgaggcaaatgatccattaataagacttgtgatgttacaccttgata 208  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  20594163 tgtattgcatcttcctttcttgctgcattaccatagagaaaactctatttatttgaggcaaaggatccattaacaagacttgtgatgttacaccttgata 20594064  T
Q  209 atcttcatttaaacccatcaaaaatttgatgattctatcttctgctctaaaacttttgttatttctcatagccaaacaagtacattgaattgtacatgtg 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||| |||||||    
T  20594063 atcttcatttaaacccatcaaaaatttgatgattctatcttctgctataaagcttttgttatttctcacagccaaacaagtacattgaattggacatgtg 20593964  T
Q  309 cattgaggtattggcctgtactgatccaattcctcccataaacctctcaaattagtgaaaaattcagtaactttcttacttcc----ttcaaattagcta 404  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||    
T  20593963 cattgaggcattggcctgtactgatccaattcctcccataaacctctcaaattagtgaaaaattcagtaactttcttacttccctgtttcaaattagcta 20593864  T
Q  405 tttcttcttgcaactgagcaacacgaattctatctcctctcatgaatctatctttaagatcattccacatatcaacaacattttctatgaatacta 500  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  20593863 tttcttcttgcaactcagctacacgaattctatctcctctcatgaatctatctttaagatcatttcacatatcaacaacattttctatgaacacta 20593768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 119 - 477
Target Start/End: Original strand, 4695846 - 4696208
Alignment:
Q  119 cttcgtttcttgctgcattaccatagagaaaactctatttatttgaggcaaatgatccattaataagacttgtgatgttacaccttgataatcttcattt 218  Q
    |||| ||||||||||||| | |||||||||||||||||| |||||||||||  ||||||||||||| ||||| ||||| |||| |||||| ||||||||     
T  4695846 cttcctttcttgctgcataatcatagagaaaactctattgatttgaggcaatggatccattaataaaacttgagatgtaacactttgatattcttcattc 4695945  T
Q  219 aaacccatcaaaaatttgatgattctatcttctgctctaaaacttttgttatttctcatagccaaacaagtacattgaattgtacatgtgcattgaggta 318  Q
    || || |||| |||||  ||||||||||| |||  ||| |||| |||   ||| | ||||||||||||| | ||  |||||| ||| ||||| ||||| |    
T  4695946 aacccaatcagaaattgaatgattctatcctctaatctgaaaccttttgcattacgcatagccaaacaactgcaaggaattggacaggtgcagtgaggca 4696045  T
Q  319 ttggcctgtactgatccaattcctcccataaacctctcaaattagtgaaaaattcagtaactttcttacttc----cttcaaattagctatttcttcttg 414  Q
    | ||||| |||||||||||||| |||||||| ||||| || | ||||||  |||||||||||||||| ||||    ||||| ||| |  |||||||  ||    
T  4696046 taggcctatactgatccaattcttcccataagcctcttaattcagtgaagtattcagtaactttcttgcttccttgcttcagattggaaatttcttgctg 4696145  T
Q  415 caactgagcaacacgaattctatctcctctcatgaatctatctttaagatcattccacatatc 477  Q
    ||| ||||| || | ||| | ||||||||||||||| | |||||| |||||||||||||||||    
T  4696146 caattgagccactctaatacgatctcctctcatgaaacgatctttgagatcattccacatatc 4696208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 20599692 - 20599591
Alignment:
Q  1 cttgaaaaccatttcctctacctcttccaaattgtctctgaccatccatggcattcacaaaaccagaagttgtatcatctatagtagtaacaggtgatga 100  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  20599692 cttgaaaaccatttcctctacctataccaaattgtctctgaccatccatggcattcacaaaaccagaagctatatcatctatagtagtaacaggtgatga 20599593  T
Q  101 ta 102  Q
    ||    
T  20599592 ta 20599591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 440 - 495
Target Start/End: Original strand, 13796301 - 13796356
Alignment:
Q  440 cctctcatgaatctatctttaagatcattccacatatcaacaacattttctatgaa 495  Q
    ||||||||||||| ||| |||||||| |||||||||||||||||||||| ||||||    
T  13796301 cctctcatgaatcaatccttaagatcgttccacatatcaacaacattttatatgaa 13796356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 13795979 - 13796021
Alignment:
Q  124 tttcttgctgcattaccatagagaaaactctatttatttgagg 166  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||    
T  13795979 tttcttgttgcattatcatagagaaaaccctatttatttgagg 13796021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 491
Target Start/End: Original strand, 5154349 - 5154830
Alignment:
Q  11 atttcctctacctcttccaaattgtctctgaccatccatggcattcacaaaaccagaagttgtatcatctatagtagtaacaggtgatgatacgacactg 110  Q
    |||||||||||| ||||||||||| |||||||||||||||||||| |||| |||| |||||||||||||||||| ||||   ||||| ||||| ||| |     
T  5154349 atttcctctaccccttccaaattgcctctgaccatccatggcattaacaagaccacaagttgtatcatctataggagta---ggtgaagatactacattt 5154445  T
Q  111 tactgcgtcttcgtttcttgctgcattaccatagagaaaactctatttatttgaggcaaatgatccattaataagacttgtgatgttacaccttgataat 210  Q
    |||||| ||||  ||||||||||||||||||||||||||||  | ||||||||||| ||| ||| ||| || || |||| |||||| || ||||||||||    
T  5154446 tactgcatctttctttcttgctgcattaccatagagaaaaccatgtttatttgaggtaaaggatacatcaacaacacttttgatgtcaccccttgataat 5154545  T
Q  211 cttcatttaaacccatcaaaaatttgatgattctatcttctgctctaaaacttttgttatttctcatagccaaacaagtacattgaattgtacatgtgca 310  Q
    | ||||| || ||||| ||||| ||||| ||||||||||||||| ||| |  |||||||||||||||||| ||||||||||||||||||| ||| || ||    
T  5154546 catcattcaatcccattaaaaacttgataattctatcttctgctgtaagagctttgttatttctcatagcaaaacaagtacattgaattggacaggtaca 5154645  T
Q  311 ttgaggtattggcctgtactgatccaattcctcccataaacctctcaaattagtgaaaaattcagtaactttcttacttcc----ttcaaattagctatt 406  Q
     |||||  | |||||||| ||||||||||| ||||| ||||||||||||| |||||| |||||||||||||||||||||||    || |  ||||| |||    
T  5154646 ctgaggcttaggcctgtattgatccaattcatcccacaaacctctcaaatcagtgaagaattcagtaactttcttacttccttgttttaggttagcaatt 5154745  T
Q  407 tcttcttgcaactgagcaacacgaattctatctcctctcatgaatctatctttaagatcattccacatatcaacaacattttcta 491  Q
    ||||||||||| |||||||| | ||||||||| ||  |||||||||||||||||||  |||||||||||||||||||||||||||    
T  5154746 tcttcttgcaattgagcaactctaattctatcccccttcatgaatctatctttaaggccattccacatatcaacaacattttcta 5154830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 391 - 500
Target Start/End: Complemental strand, 22841490 - 22841381
Alignment:
Q  391 cttcaaattagctatttcttcttgcaactgagcaacacgaattctatctcctctcatgaatctatctttaagatcattccacatatcaacaacattttct 490  Q
    |||||||||||| |||||||  ||||| |||||||| | ||||||||| |||||||| || | |||||| | ||||||||||||||| |   ||||||||    
T  22841490 cttcaaattagcaatttcttgatgcaattgagcaaccctaattctatcacctctcataaaacgatctttcaaatcattccacatatctatcgcattttct 22841391  T
Q  491 atgaatacta 500  Q
    ||||||||||    
T  22841390 atgaatacta 22841381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 495
Target Start/End: Original strand, 15525906 - 15526010
Alignment:
Q  391 cttcaaattagctatttcttcttgcaactgagcaacacgaattctatctcctctcatgaatctatctttaagatcattccacatatcaacaacattttct 490  Q
    |||||||||||| ||||| |  |||||  ||||||| | ||||||||| |||| ||| || | |||||| | |||||| |||||||| ||  ||||||||    
T  15525906 cttcaaattagcaatttcctgatgcaatggagcaaccctaattctatcacctcgcataaaacgatctttcaaatcatttcacatatccactgcattttct 15526005  T
Q  491 atgaa 495  Q
    |||||    
T  15526006 atgaa 15526010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 11 - 492
Target Start/End: Original strand, 31233681 - 31234166
Alignment:
Q  11 atttcctctacctcttccaaattgtctctgaccatccatggcattcacaaaaccagaagttgtatcatctatagtagtaacaggtgatgatacgacactg 110  Q
    ||||| |||||||||||||||||| |||||||||||||||||||| || || ||||||||||||||| | | ||   ||   ||||||||||| ||| |     
T  31233681 atttcttctacctcttccaaattgcctctgaccatccatggcattaactaagccagaagttgtatcacccaaagagatagttggtgatgatactacatta 31233780  T
Q  111 tactgcgtcttcgtttcttgctgcattaccatagagaaaactctatttatttgaggcaaatgatccattaataagacttgtgatgttacaccttgataat 210  Q
    |||||| ||||  ||||||||||||| |||||||||||||| |||||||| | ||| ||| ||||||| || || |||||||||||||| ||||||||||    
T  31233781 tactgcatctttctttcttgctgcataaccatagagaaaaccctatttatctaaggtaaaggatccatcaacaaaacttgtgatgttactccttgataat 31233880  T
Q  211 cttcatttaaacccatcaaaaatttgatgattctatcttctgctctaaaacttttgttatttctcatagccaaacaagtacattgaattgtacatgtgca 310  Q
    ||||||| || ||||||| ||| ||||||||| |||||||||||||||||  ||||||||| |||||||| ||||| |||||   ||||| ||| || ||    
T  31233881 cttcattcaatcccatcagaaacttgatgattatatcttctgctctaaaagctttgttattcctcatagctaaacatgtacaggcaattggacaagtaca 31233980  T
Q  311 ttgaggtattggcctgtactgatccaattcctcccataaacctctcaaattagtgaaaaattcagtaactttctt----acttccttcaaattagctatt 406  Q
    |||||| ||  |||| || ||||||||||||||||||||||||||||| |  |||||||| ||||||||||||||     ||| ||||||||| || |||    
T  31233981 ttgaggcatacgcctatattgatccaattcctcccataaacctctcaattctgtgaaaaactcagtaactttcttgctaccttgcttcaaatttgcaatt 31234080  T
Q  407 tcttcttgcaactgagcaacacgaattctatctcctctcatgaatctatctttaagatcattccacatatcaacaacattttctat 492  Q
    ||||| ||||| ||||| || | ||||||||||||||||| |||||||||||| || |||||||||||||||| | ||||||||||    
T  31234081 tcttcctgcaattgagctactctaattctatctcctctcacgaatctatcttttaggtcattccacatatcaatagcattttctat 31234166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 391 - 492
Target Start/End: Complemental strand, 23970489 - 23970389
Alignment:
Q  391 cttcaaattagctatttcttcttgcaactgagcaacacgaattctatctcctctcatgaatctatctttaagatcattccacatatcaacaacattttct 490  Q
    |||||| ||||| |||||||  ||||| || || || | |||||||||||||||||| || | ||| | |||||||||||||||||||||||||||||||    
T  23970489 cttcaagttagcaatttcttactgcaattgtgctactctaattctatctcctctcataaaacaatcct-aagatcattccacatatcaacaacattttct 23970391  T
Q  491 at 492  Q
    ||    
T  23970390 at 23970389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 92 - 259
Target Start/End: Original strand, 48156285 - 48156452
Alignment:
Q  92 aggtgatgatacgacactgtactgcgtcttcgtttcttgctgcattaccatagagaaaactctatttatttgaggcaaatgatccattaataagacttgt 191  Q
    |||||||||||| ||| |||||||  ||||  ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || ||||||    
T  48156285 aggtgatgatactacattgtactgtatctttctttcttgctgcattaccatagagaaaactctatttatttgaggtaaaggatccattaacaatacttgt 48156384  T
Q  192 gatgttacaccttgataatcttcatttaaacccatcaaaaatttgatgattctatcttctgctctaaa 259  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  48156385 gatgttacaccttgataatcttcatttaaacccatcaaaaacttgatgattctatcttctgctctaaa 48156452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 124 - 477
Target Start/End: Original strand, 23418975 - 23419332
Alignment:
Q  124 tttcttgctgcattaccatagagaaaactctatttatttgaggcaaatgatccattaataagacttgtgatgttacaccttgataatcttcatttaaacc 223  Q
    ||||||||||||| | |||||||||||||||||| |||||||||||  ||||||||||||| ||||| ||||| |||| |||||| |||||||| || ||    
T  23418975 tttcttgctgcataatcatagagaaaactctattgatttgaggcaatggatccattaataaaacttgagatgtaacactttgatattcttcattcaaccc 23419074  T
Q  224 catcaaaaatttgatgattctatcttctgctctaaaacttttgttatttctcatagccaaacaagtacattgaattgtacatgtgcattgaggtattggc 323  Q
     |||| |||||  ||||||||||| |||  ||| |||| |||   ||| | ||||||||||||| | ||  |||||| ||| ||||| ||||| || |||    
T  23419075 aatcagaaattgaatgattctatcctctaatctgaaaccttttgcattacgcatagccaaacaactgcaaggaattggacaggtgcagtgaggcataggc 23419174  T
Q  324 ctgtactgatccaattcctcccataaacctctcaaattagtgaaaaattcagtaactttcttacttc----cttcaaattagctatttcttcttgcaact 419  Q
    || |||||||||||||| |||||||| ||||| || | ||||||  |||||||||||||||| ||||    ||||| ||| |  |||||||  ||||| |    
T  23419175 ctatactgatccaattcttcccataagcctcttaattcagtgaagtattcagtaactttcttgcttccttgcttcagattggaaatttcttgctgcaatt 23419274  T
Q  420 gagcaacacgaattctatctcctctcatgaatctatctttaagatcattccacatatc 477  Q
    |||| || | ||| | ||||||||||||||| | |||||| |||||||||||||||||    
T  23419275 gagccactctaatacgatctcctctcatgaaacgatctttgagatcattccacatatc 23419332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 119 - 477
Target Start/End: Complemental strand, 3057 - 2695
Alignment:
Q  119 cttcgtttcttgctgcattaccatagagaaaactctatttatttgaggcaaatgatccattaataagacttgtgatgttacaccttgataatcttcattt 218  Q
    |||| ||||||||||||| | |||||||||||||||||| ||||||||| |  ||||||||||||| ||||| ||||| |||| |||||| ||||||||     
T  3057 cttcctttcttgctgcataatcatagagaaaactctattgatttgaggcgatggatccattaataaaacttgagatgtaacactttgatattcttcattc 2958  T
Q  219 aaacccatcaaaaatttgatgattctatcttctgctctaaaacttttgttatttctcatagccaaacaagtacattgaattgtacatgtgcattgaggta 318  Q
    || || |||| |||||  ||||||||||| |||  ||| |||| |||   ||| | ||||||||||||| | ||  |||||| ||| ||||| ||||| |    
T  2957 aacccaatcagaaattgaatgattctatcctctaatctgaaaccttttgcattacgcatagccaaacaactgcaaggaattgaacaggtgcagtgaggca 2858  T
Q  319 ttggcctgtactgatccaattcctcccataaacctctcaaattagtgaaaaattcagtaactttcttacttc----cttcaaattagctatttcttcttg 414  Q
    | |||||||||||||||||||| |||||||| ||||| || | ||||||  |||||||||||||||| ||||    ||||| ||| |  ||||||| |||    
T  2857 taggcctgtactgatccaattcttcccataagcctcttaattcagtgaagtattcagtaactttcttgcttccttgcttcagattggaaatttcttgttg 2758  T
Q  415 caactgagcaacacgaattctatctcctctcatgaatctatctttaagatcattccacatatc 477  Q
    ||| ||||| || | ||| | ||||||||||||||| | |||||| |||||||||||||||||    
T  2757 caattgagccactctaatacgatctcctctcatgaaacgatctttgagatcattccacatatc 2695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 124 - 360
Target Start/End: Original strand, 28583945 - 28584181
Alignment:
Q  124 tttcttgctgcattaccatagagaaaactctatttatttgaggcaaatgatccattaataagacttgtgatgttacaccttgataatcttcatttaaacc 223  Q
    |||||||  |||||| |||||||||||| ||  |||||||||| ||| ||||||| | ||| || |||||||  ||||||||||||||||||||||| |     
T  28583945 tttcttgtcgcattatcatagagaaaaccctgcttatttgaggtaaaggatccataagtaatacatgtgatgcaacaccttgataatcttcatttaatca 28584044  T
Q  224 catcaaaaatttgatgattctatcttctgctctaaaacttttgttatttctcatagccaaacaagtacattgaattgtacatgtgcattgaggtattggc 323  Q
      ||||||| |  || |||||||||||  |||||||||  ||   ||| | ||| ||||||||||  ||  |||||| ||||||||||||||||||  ||    
T  28584045 attcaaaaactgaattattctatcttcatctctaaaaccctttgcattgcgcattgccaaacaagcgcaaggaattggacatgtgcattgaggtataagc 28584144  T
Q  324 ctgtactgatccaattcctcccataaacctctcaaat 360  Q
     | || ||||| || || |||||||| ||||||||||    
T  28584145 atatattgatcaaaatcttcccataatcctctcaaat 28584181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 442 - 492
Target Start/End: Original strand, 28584267 - 28584317
Alignment:
Q  442 tctcatgaatctatctttaagatcattccacatatcaacaacattttctat 492  Q
    |||||| || | |||||||||||||||||||||||||||||||||||||||    
T  28584267 tctcataaaacgatctttaagatcattccacatatcaacaacattttctat 28584317  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 500
Target Start/End: Complemental strand, 14232996 - 14232887
Alignment:
Q  391 cttcaaattagctatttcttcttgcaactgagcaacacgaattctatctcctctcatgaatctatctttaagatcattccacatatcaacaacattttct 490  Q
    |||||||||||| ||||| |  ||||| |||||||| | ||||||||| |||||||| || | |||||| | ||||||||||||||| |   ||||||||    
T  14232996 cttcaaattagcaatttcctgctgcaattgagcaaccctaattctatcacctctcataaaacgatctttcaaatcattccacatatctatcgcattttct 14232897  T
Q  491 atgaatacta 500  Q
    ||||| ||||    
T  14232896 atgaagacta 14232887  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 352
Target Start/End: Complemental strand, 37175104 - 37174924
Alignment:
Q  172 gatccattaataagacttgtgatgttacaccttgataatcttcatttaaacccatcaaaaatttgatgattctatcttctgctctaaaacttttgttatt 271  Q
    ||||||| ||||| || || || | ||| |||||||| |||||||| || || |||||||| |  |||| |||||| ||||| ||||||| |||   |||    
T  37175104 gatccatcaataaaacctgagaggctactccttgatattcttcattcaagccgatcaaaaactgtatgactctatcctctgccctaaaacctttagcatt 37175005  T
Q  272 tctcatagccaaacaagtacattgaattgtacatgtgcattgaggtattggcctgtactgatccaattcctcccataaacc 352  Q
     |||||||| | |||||||||  | || | ||| || |||||||| || || || || ||||||||||| |||||||||||    
T  37175004 cctcatagcaagacaagtacagggcataggacaagtacattgaggcatgggtctatattgatccaattcttcccataaacc 37174924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 481
Target Start/End: Complemental strand, 13470764 - 13470719
Alignment:
Q  436 atctcctctcatgaatctatctttaagatcattccacatatcaaca 481  Q
    |||||||||||||||||  || ||||||||||| ||||||||||||    
T  13470764 atctcctctcatgaatcggtccttaagatcatttcacatatcaaca 13470719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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