View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6607_high_5 (Length: 403)
Name: NF6607_high_5
Description: NF6607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6607_high_5 |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 403
Target Start/End: Original strand, 28849959 - 28850334
Alignment:
| Q |
19 |
atcagtatgcatttatgaattaatttattattagcttacaagctagtgaaaattgtatatgtaatttatttgcttaacaatgccgaattgttttgattct |
118 |
Q |
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| T |
28849959 |
atcagtatgtgtttatgaattaatttattattagcttacaagctagtgaaaattgtatatgtaatttatttgcttaacaatgccgaattgttttgattct |
28850058 |
T |
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| Q |
119 |
agtctctaatttgcatgctttgcttaaagatgagttttgatattgtgacatggttagattgcaggtgagcgacttggtttagaaccaactcttccttatt |
218 |
Q |
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| T |
28850059 |
agtctctaatttgcatgctttgcttaaagatgagttttgatattgtgaaatggttaaattgcaggtg---------gattagaaccaaatcttccttatt |
28850149 |
T |
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| Q |
219 |
tgagtcccttgctaattggtgaaannnnnnnagttggtgccaattttgcatctgcgggcattgtaattcttaatgataccagttatcaatctgtaagttt |
318 |
Q |
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| T |
28850150 |
tgagtcccttgctaattggtgaaaattttttagttggtgccaattttgcatctgtgggcattgtaattcttaatgataccggttatcaatctgtaagttt |
28850249 |
T |
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| Q |
319 |
agttagtttttaatgttataaatatgactagttagttttgttataggaggataaaactgttagtgacatgaatcaaacattgatc |
403 |
Q |
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| T |
28850250 |
agttagttgttaatgttataaatatgactggttacttttgttataggaggataaaactgttagtgacatgaatcaaacattgatc |
28850334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 6e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 55 - 403
Target Start/End: Complemental strand, 35372492 - 35372144
Alignment:
| Q |
55 |
tacaagctagtgaaaattgtatatgtaatttatttgcttaacaatgccgaattgttttgattctagtctctaatttgcatgctttgcttaaagatgagtt |
154 |
Q |
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| T |
35372492 |
tacaagctagtgaaaatagtgcatgtaatttacttgcttaacaatgacaaattgttttggttatagtctctaatgtgcatgcattgcttaaagatgagat |
35372393 |
T |
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| Q |
155 |
ttgatattgtgacatggttagattgcaggtgagcgacttggtttagaaccaactcttccttatttgagtcccttgctaattggtgaaannnnnnnagttg |
254 |
Q |
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| T |
35372392 |
ttgcttttatgaaatggttaaattgcaggtgagcaacttggtttagaacagactctcccttatttgagtcccttgctacttggtgaaaaacttttagttg |
35372293 |
T |
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| Q |
255 |
gtgccaattttgcatctgcgggcattgtaattcttaatgataccagttatcaatctgtaagtttagttagtttttaatgttataaatatgactagttagt |
354 |
Q |
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| T |
35372292 |
gtgccaattttgcttctgcgggcgttggaattcttaatgatacaggaattcaatttgtaagtttagttagttgttattgttataaatatgactggttagt |
35372193 |
T |
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| Q |
355 |
tttgttataggaggataaaactgttagtgacatgaatcaaacattgatc |
403 |
Q |
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| T |
35372192 |
tttgttataggatgacgaaattgctagtgacgtgaatcaaactttgatc |
35372144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 54 - 297
Target Start/End: Complemental strand, 35378140 - 35377899
Alignment:
| Q |
54 |
ttacaagctagtgaaaattgtatatgtaatttatttgcttaacaatgccgaattgttttgattctagtctctaatttgcatgctttgcttaaagatgagt |
153 |
Q |
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|||| ||||||||||||| |||||||||||||| ||||||||||||| |||| |||| | ||||||| ||| |||||||||| |||| ||||| | || |
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| T |
35378140 |
ttactagctagtgaaaatagtatatgtaatttacttgcttaacaatgttgaatcgtttgg-ttctagt-tctcatttgcatgcattgcataaagtagggt |
35378043 |
T |
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| Q |
154 |
tttgatattgtgacatggttagattgcaggtgagcgacttggtttagaaccaactcttccttatttgagtcccttgctaattggtgaaannnnnnnagtt |
253 |
Q |
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| T |
35378042 |
tttgatattgtgaaattgttaaattgcaggtgagagacttggtttagaaccaactcttccttatttgagtcccttgctaattggcgaaaaacttttagtt |
35377943 |
T |
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| Q |
254 |
ggtgccaattttgcatctgcgggcattgtaattcttaatgatac |
297 |
Q |
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| T |
35377942 |
ggtgccaattttgcatccgcgggtattggaattctcaatgatac |
35377899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 145 - 316
Target Start/End: Complemental strand, 35359133 - 35358962
Alignment:
| Q |
145 |
aagatgagttttgatattgtgacatggttagattgcaggtgagcgacttggtttagaaccaactcttccttatttgagtcccttgctaattggtgaaann |
244 |
Q |
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| T |
35359133 |
aagatgaattttgatgttgtgaaatgattaaattgcaggtgagagacttggtttagaaccatctcttccttatttgagtcccttattagttggtgaaaaa |
35359034 |
T |
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| Q |
245 |
nnnnnagttggtgccaattttgcatctgcgggcattgtaattcttaatgataccagttatcaatctgtaagt |
316 |
Q |
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| T |
35359033 |
cttttagttggtgccaattttgcatcagcaggtgttggaattctcaatgataccggatttcaatttgtaagt |
35358962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 48091812 - 48091860
Alignment:
| Q |
250 |
agttggtgccaattttgcatctgcgggcattgtaattcttaatgatacc |
298 |
Q |
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| T |
48091812 |
agttggtgccaattttgcttccgctggcattggaattctcaatgatacc |
48091860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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