View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6607_high_7 (Length: 398)
Name: NF6607_high_7
Description: NF6607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6607_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 53700171 - 53699903
Alignment:
| Q |
17 |
catttaaggtcaaattatgtgctttagacttaaaccttgttagtttaacttttatggcttatcctcaaatgaattttccgaacgaaatgatagccaaatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53700171 |
catttaaggtcaaattatgtgctttagacttaaaccttgttagtttaacttttatggcttatcctcaaatgaattttccgaacgaaatgatagccaaatg |
53700072 |
T |
|
| Q |
117 |
taggaataccaggcaccaagtttttgtgccaatattaggagcagcatcctattgtgtttctatttgatgcctagtgnnnnnnnggattgaaatctcggtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
53700071 |
taggaataccaggcaccaagtttttgtgccaatattaggagcagcatcctattgtgtttctatttgatgcctagtgtttttttggattgaaatctcagtt |
53699972 |
T |
|
| Q |
217 |
tcatgttatttctgtcaaatcttctatgtttctgacatattgtaactctaacgtcccggattttaaatc |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
53699971 |
tcatgttatttctgtcaaatcttctatgtttctgacatattgtaactgtaacgtcccggattttaaatc |
53699903 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 40887089 - 40887126
Alignment:
| Q |
320 |
agacaagactattttgtttcttcataactagaacataa |
357 |
Q |
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| T |
40887089 |
agacaagactattttgttttttcttaactagaacataa |
40887126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 318 - 357
Target Start/End: Original strand, 27976275 - 27976314
Alignment:
| Q |
318 |
aaagacaagactattttgtttcttcataactagaacataa |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
27976275 |
aaagacaagactattttgtttcttcataactagaacataa |
27976314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 318 - 357
Target Start/End: Original strand, 28062803 - 28062842
Alignment:
| Q |
318 |
aaagacaagactattttgtttcttcataactagaacataa |
357 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28062803 |
aaagacaagactattttgtttcttcataactagaacataa |
28062842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 29045548 - 29045586
Alignment:
| Q |
320 |
agacaagactatttt-gtttcttcataactagaacataa |
357 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |
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| T |
29045548 |
agacaagactatttttgtttcttcataactagaacataa |
29045586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 357
Target Start/End: Original strand, 10335187 - 10335226
Alignment:
| Q |
318 |
aaagacaagactattttgtttcttcataactagaacataa |
357 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
10335187 |
aaagacaagactattttgtttcttcctaactagaacataa |
10335226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 357
Target Start/End: Original strand, 41942222 - 41942261
Alignment:
| Q |
318 |
aaagacaagactattttgtttcttcataactagaacataa |
357 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |
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| T |
41942222 |
aaagacaagactattttgtttcttcctaactagaacataa |
41942261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 41951181 - 41951218
Alignment:
| Q |
265 |
taacgtcccggattttaaatccaagacattatgtctaa |
302 |
Q |
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|||| |||||||||||||||||||||||||| |||||| |
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| T |
41951181 |
taacatcccggattttaaatccaagacattacgtctaa |
41951218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 357
Target Start/End: Original strand, 42076646 - 42076684
Alignment:
| Q |
319 |
aagacaagactattttgtttcttcataactagaacataa |
357 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |
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| T |
42076646 |
aagacaagactattttgtttcttcctaactagaacataa |
42076684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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