View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6607_low_10 (Length: 381)
Name: NF6607_low_10
Description: NF6607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6607_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 15266208 - 15266567
Alignment:
| Q |
17 |
ccaatcacctttggagtaatcacattggttttggtaaccttttttcttttctgaaatataatagtaaagttttgtaaaacgacggaacaatcctacgagt |
116 |
Q |
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| T |
15266208 |
ccaatcacccttggaataatcacattggttttggtgaccttttttcttttctgaaataaaatagtaaagttttgtaaaacaacggaacaatcctatgagt |
15266307 |
T |
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| Q |
117 |
aaacaatcattttggtccacaaaacattgtcattattgtagccgaatatgactaaattacnnnnnnnncaaaatatattttttgttaagtaattatatcg |
216 |
Q |
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| T |
15266308 |
aaacaatcattttggtccataaaacattgtcactattgtagccgaatatgactaaattacaaaagcaacaaaatatattttttgttaagtaattttatcg |
15266407 |
T |
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| Q |
217 |
attaagatgattcatgcacattcgaacatcgaactaatttaaaaaatatatcaaaatcgatgattaaactatct---nnnnnnnntataaattcagtttc |
313 |
Q |
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| T |
15266408 |
attaagatgattcatgcacattcgaacatcgaactaattaaaaaaatatatcaaaatcgatgattaaactatctaaaaaaatatatataaattcagtttc |
15266507 |
T |
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| Q |
314 |
gttatacctgaataagaagatgaaggaggagaagcagaatgagaagtgatgttgatgatg |
373 |
Q |
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| T |
15266508 |
gttatacctgaataagaagatgaaggaggagaagcagaatgagaagtgatgttgatgatg |
15266567 |
T |
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