View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6607_low_11 (Length: 363)
Name: NF6607_low_11
Description: NF6607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6607_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 39918584 - 39918930
Alignment:
| Q |
1 |
gttaaccccgttttcaaacaccgtctcaaaacatcatcgtccaaaacaacaatccttaaactcacaccaaacgacgctgaaacactttaccgttacaaat |
100 |
Q |
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| T |
39918584 |
gttaaccccgttttcaaacaccgtctcaaaacatcatcgtccaaaacaacaatccttaaactcacaccaaacgacgctgaaacactttaccgttacaaat |
39918683 |
T |
|
| Q |
101 |
tctccaccactgagttttttcctcgtgacattgattctgttttgaaaaacaaactcaccctcggaaccttcttagccgttccaagagacggaaaatatgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39918684 |
tctccaccactgagttttttcctcgtgacattgattctgttttgaaaaacaaactcaccctcggaaccttcttagccattccaagagacggaaaatatgg |
39918783 |
T |
|
| Q |
201 |
ggccggatcatataattggtccggctccgaaagctttttaatggacccaccgagttcgtgggctttagtaagtgtttggaactgcaaagacgtgtttacc |
300 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39918784 |
ggccggatcagataactggtccggctccgaaagctttttaatggacccaccgagttcgtgggctttagtaagtgtttggaactgcaaagacgtgtttacc |
39918883 |
T |
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| Q |
301 |
cttgaagtaaaaggcgcatcgcgcctgagacgtgtgttagcaaaaac |
347 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39918884 |
cttgaagtaaaaggcgcatcgcgcgtgagacgtgtgttagcaaaaac |
39918930 |
T |
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