View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6607_low_15 (Length: 330)
Name: NF6607_low_15
Description: NF6607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6607_low_15 |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 143 - 330
Target Start/End: Original strand, 30370684 - 30370871
Alignment:
| Q |
143 |
tcaatcctcgcacacaaagttctagattcttccaaatgcaaaaccctaatacctaacctaaccccacacgaattcgaacactcattcttcactcatcaca |
242 |
Q |
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| T |
30370684 |
tcaatcctcgcacacaaagttctagattcttccaaatgcaaaaccctaatacctaacctaaccccacacgaattcgaacactcattcttcactcatcaca |
30370783 |
T |
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| Q |
243 |
ccaccgttaacctcaaaaccacactcgatttcttcagtttcgcttcaaagaatttcaaattccgtttcaccgttcattcttattgcat |
330 |
Q |
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| T |
30370784 |
ccaccgttaacctcaaaaccacactcgatttcttcagtttcgcttcaaagaatttcaaattccgtttcaccgttcgttcttattgcat |
30370871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 30370542 - 30370619
Alignment:
| Q |
1 |
cattacgactaaaccccccattctcttcacacgcctcctaacctggatcacctcaaccctcccccgctaccgtcacat |
78 |
Q |
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| T |
30370542 |
cattactactaaaccccccattctcttcacacgcctcctaacctggatcacctcaaccctcccccgctaccgtcacat |
30370619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 270 - 330
Target Start/End: Original strand, 51392155 - 51392215
Alignment:
| Q |
270 |
atttcttcagtttcgcttcaaagaatttcaaattccgtttcaccgttcattcttattgcat |
330 |
Q |
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| T |
51392155 |
atttcttcagtttcgcttcaaaaaatttcaaattccgttttaccgttccttcttattgcat |
51392215 |
T |
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