View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6607_low_18 (Length: 238)
Name: NF6607_low_18
Description: NF6607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6607_low_18 |
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| [»] scaffold0102 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 20599753 - 20599980
Alignment:
| Q |
1 |
aaacttgttataagaaacatggttaccctcctaattggggaagaggaggaggaaattcttttgctaatgctaattttgtggaaagtgaagaaactgagct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20599753 |
aaacttgttataagaaacatggttaccctcctaattggggaagaggaggaggaaattcttttgctaatgctaattttgtggaaagtgaagaaactgagct |
20599852 |
T |
|
| Q |
101 |
caagggaaatgcttccactaggaaaaatgatgaaaatggaatgatgctgaccaaagatcagtatcagaatttgattgcatttttggagaaaagaaacatt |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
20599853 |
caagggaaatgcttccactgggaaaaatgatgaaaatggaataatgctaaccaaagatcagtatcagaatttgattgcattgttggagaaaagcaacatt |
20599952 |
T |
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| Q |
201 |
gaagctaaaggctctgcaaatgtgatga |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
20599953 |
gaagctaaaggctctgcaaatgtgatga |
20599980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 4695662 - 4695605
Alignment:
| Q |
3 |
acttgttataagaaacatggttaccctcctaattggggaagaggaggaggaaattctt |
60 |
Q |
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|||||||||||||| ||||| | |||||||||||||| ||||||||||||||||||| |
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| T |
4695662 |
acttgttataagaagcatggctttcctcctaattggggtagaggaggaggaaattctt |
4695605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 5154274 - 5154052
Alignment:
| Q |
6 |
tgttataagaaacatggttaccctcctaattggggaagaggaggaggaaattcttttgctaatgctaattttgtggaaagtgaagaaactgagctcaagg |
105 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
5154274 |
tgttataagaaacatggttatcctcctaattggggaagaggaggaggaaattcttttgctaatgctaattttgtggaatgtgaagatactgagctcaagg |
5154175 |
T |
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| Q |
106 |
gaaatgcttccactaggaaaaatgatgaaaatggaatgatgctgaccaaagatcagtatcagaatttgattgcatttttggagaaaagaaacattgaagc |
205 |
Q |
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||| |||||| | |||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||| | ||||||||||| ||||||||||| |
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| T |
5154174 |
gaagcacttccattgggaaaaatgatgaaaatgaaatgatgctaaccaaagaccagtatcagaatttgattgcactgttggagaaaagcaacattgaagc |
5154075 |
T |
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| Q |
206 |
taaaggctctgcaaatgtgatga |
228 |
Q |
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||||||||||||||||||||||| |
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| T |
5154074 |
taaaggctctgcaaatgtgatga |
5154052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 22841945 - 22842012
Alignment:
| Q |
1 |
aaacttgttataagaaacatggttaccctcctaattggggaagaggaggaggaaattcttttgctaat |
68 |
Q |
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|||||||||| ||||| ||||| |||||||| || ||||||||||| ||||||||||| | ||||||| |
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| T |
22841945 |
aaacttgttacaagaagcatggataccctccaaactggggaagaggtggaggaaattcctatgctaat |
22842012 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 31233610 - 31233391
Alignment:
| Q |
1 |
aaacttgttataagaaacatggttaccctcctaattggggaagaggaggaggaaattcttttgctaatgctaattttgtggaaagtgaagaaactgagct |
100 |
Q |
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|||| ||||| |||||||||||||| | |||||||||||| |||||||| |||||||||||||| |||||||| |||||||| ||||||| ||| |
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| T |
31233610 |
aaacatgttacaagaaacatggttagcttcctaattggggcagaggaggtggaaattcttttgcaaatgctaactttgtggattgtgaagatgttgaatc |
31233511 |
T |
|
| Q |
101 |
caagggaaatgcttccactaggaaaaatgatgaaaatggaatgatgctgaccaaagatcagtatcagaatttgattgcatttttggagaaaagaaacatt |
200 |
Q |
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|| |||| |||| || |||||||||||||| |||||||||||| || || ||||||||||| |||||||||||||| ||||| | ||| || || |
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| T |
31233510 |
taaaggaagcacttctgctgggaaaaatgatgaaggtggaatgatgctaactaaggatcagtatcaaaatttgattgcattattggaaagaagcaatgtt |
31233411 |
T |
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| Q |
201 |
gaagctaaaggctctgcaaa |
220 |
Q |
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||||||||||| || ||||| |
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| T |
31233410 |
gaagctaaaggttcagcaaa |
31233391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 37175357 - 37175416
Alignment:
| Q |
1 |
aaacttgttataagaaacatggttaccctcctaattggggaagaggaggaggaaattctt |
60 |
Q |
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||||||||||||| || |||||||| || || ||||||||||||||||| |||||||||| |
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| T |
37175357 |
aaacttgttataaaaagcatggttatccaccaaattggggaagaggaggtggaaattctt |
37175416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 3241 - 3298
Alignment:
| Q |
3 |
acttgttataagaaacatggttaccctcctaattggggaagaggaggaggaaattctt |
60 |
Q |
| |
|
|||||||||||||| ||||| | |||||||||||||| ||||||||||| ||||||| |
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| T |
3241 |
acttgttataagaagcatggctttcctcctaattggggtagaggaggaggtaattctt |
3298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 14233453 - 14233518
Alignment:
| Q |
3 |
acttgttataagaaacatggttaccctcctaattggggaagaggaggaggaaattcttttgctaat |
68 |
Q |
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|||||||| ||||| ||||| |||||||| || ||||||||||| ||||||||||| | ||||||| |
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| T |
14233453 |
acttgttacaagaagcatggataccctccaaactggggaagaggtggaggaaattcctatgctaat |
14233518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 23418786 - 23418729
Alignment:
| Q |
3 |
acttgttataagaaacatggttaccctcctaattggggaagaggaggaggaaattctt |
60 |
Q |
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|||||||||||||| ||||| | |||||||||||||| ||||||||||| ||||||| |
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| T |
23418786 |
acttgttataagaagcatggctttcctcctaattggggtagaggaggaggtaattctt |
23418729 |
T |
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