View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6607_low_20 (Length: 224)
Name: NF6607_low_20
Description: NF6607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6607_low_20 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 55279774 - 55279997
Alignment:
| Q |
1 |
tcatcaggatgggaagcgaagaagagaatgcagagttctacttgagatactacgttggtcataagggtaaattcggacatgaacttttggagtttgagtt |
100 |
Q |
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| T |
55279774 |
tcatcaggatgggaagcgaagaagagaatgcagagttctacttgagatactacgttggtcataagggtaaattcggacatgaatttttggagtttgagtt |
55279873 |
T |
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| Q |
101 |
ccgtccagatggtaagcttcgttatgctaacaattccaattacaaaaacgatacaatcattcgtaaggaggcttatcttactcctgctgttcttcgtgag |
200 |
Q |
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| T |
55279874 |
ccgtccagatggtaagcttcgttatgctaacaattccaattacaaaaacgatacaatcattcgtaaggaggtttatcttactcctgctgttcttcgtgag |
55279973 |
T |
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| Q |
201 |
tgtcgtcgtatcatttctgacagc |
224 |
Q |
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| T |
55279974 |
tgtcgtcgtatcatttctgacagc |
55279997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 50507371 - 50507169
Alignment:
| Q |
9 |
atgggaagcgaagaagagaatgcagagttctacttgagatactacgttggtcataagggtaaattcggacatgaacttttggagtttgagttccgtccag |
108 |
Q |
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| T |
50507371 |
atgggaagtgaaaaagagaatggagtgttctacttgagataccacattggacataagggcaagcatggtcacgaattcttggagtttgagttcactgaca |
50507272 |
T |
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| Q |
109 |
atggtaagcttcgttatgctaacaattccaattacaaaaacgatacaatcattcgtaaggaggcttatcttactcctgctgttcttcgtgagtgtcgtcg |
208 |
Q |
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| T |
50507271 |
atggcaagcttcgttacgccaacaactccaattacaaaaacgacaccatcattcgtaaggaggtttatgtatctcctgccgttattcatgaatggcgtcg |
50507172 |
T |
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| Q |
209 |
tat |
211 |
Q |
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||| |
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| T |
50507171 |
tat |
50507169 |
T |
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