View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6607_low_4 (Length: 499)
Name: NF6607_low_4
Description: NF6607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6607_low_4 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 10 - 480
Target Start/End: Complemental strand, 13228043 - 13227573
Alignment:
| Q |
10 |
tccaagaaaataccaaaaattcctcgttatatatatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctatttcgtctttcgttt |
109 |
Q |
| |
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||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13228043 |
tccaaaaaaataccaaacattcctcgttatttatatttattcttaagcaagtcccaaaaagtccttagttgagccatcatttctatttcgtctttcgttt |
13227944 |
T |
|
| Q |
110 |
cgatagatatatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13227943 |
cgatagatatatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagacc |
13227844 |
T |
|
| Q |
210 |
ctgctcatggattaacgaaaatgtgcagaagctctatttgcctctgccattctatgagtctcttgctttttgcgtatggcatcgccactccctttggcag |
309 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13227843 |
ctgctcatggattaacgaaaatgtgcaaaagctctatttgcctctgccattctatgagtctcttgctttttgcgtatggcatcgccactccctttggcag |
13227744 |
T |
|
| Q |
310 |
catccactaattcggaacttaatttgaaagccatatttcgacccggacgttttcgggatgcgcctaataaccaacgaatggcaagtgcttttccttgtgt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13227743 |
catccactaattcggaacttaatttgaaagccatatttcgacccggacgttttcgggatgcgcctaataaccaacgaatggcaagtgcttttccttgtgt |
13227644 |
T |
|
| Q |
410 |
ggatcctatttcaacgggaacttttttattcgatccgcttacgcgtcttgtttttatttttactgctatat |
480 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13227643 |
ggatcctatttcaacgggaacttttttattcgatccgcttacgcgtcttgtttttgtttttactgctatat |
13227573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 135 - 432
Target Start/End: Original strand, 53883670 - 53883967
Alignment:
| Q |
135 |
ttctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatggattaacgaaaatgtg |
234 |
Q |
| |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| |
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| T |
53883670 |
ttctttttctattgattcttttccaattat------ggatggatccatacataggtctatgtgtgtgtatagatcctgctcattgattaatgaaaatgtg |
53883763 |
T |
|
| Q |
235 |
cagaagctctatttgcctctgccattctatgagtctcttgctttttgcgtatggcatcgccactccctttggcagcatccactaattcggaacttaattt |
334 |
Q |
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|| ||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| |||||||||||||| |||||| |
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| T |
53883764 |
caaaagatctatttgcctctgccattctatgagtctcttcctttttgtgtatggcatagccactccctttggcagcattcactaattcggaacataattt |
53883863 |
T |
|
| Q |
335 |
gaaagccatatttcgacccggacgttttcgggatgcgcctaataacca------acgaatggcaagtgcttttccttgtgtggatcctatttcaacggga |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| || |||||||||||||||||| ||| |
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| T |
53883864 |
gaaagccatatttcgacccggacgttttcgggatgcgcctaataaccaacgaatacgaatggtaagtgctttttctaatgtggatcctatttcaaccgga |
53883963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 43 - 465
Target Start/End: Complemental strand, 42680336 - 42679920
Alignment:
| Q |
43 |
tatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattccgattcttttt |
142 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42680336 |
tatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctattttgtctttcgtttccatagatatatcgattaattccgattcttttt |
42680237 |
T |
|
| Q |
143 |
ctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatggattaacgaaaatgtgcagaagct |
242 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
42680236 |
ctattgattcttttccaattat------gtatggatccatacataggtctacgtgtgtatatagatcctactcatggattaacgaaaatgtgcaaaagct |
42680143 |
T |
|
| Q |
243 |
ctatttgcctctgccattctatgagtctcttgctttttgcgtatggcatcgccactccctttggcagcatccactaattcggaacttaatttgaaagcca |
342 |
Q |
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|||||||| |||||||||||| ||||||||| ||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
42680142 |
ctatttgcttctgccattctacgagtctcttcctttttgtgtatggcatcgtcactccctttagcagcatccactaattcggaacttaatttgagagcca |
42680043 |
T |
|
| Q |
343 |
tatttcgacccggacgttttcgggatgcgcctaataaccaacgaatggcaagtgcttttccttgtgtggatcctatttcaacgggaacttttttattcga |
442 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| |
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| T |
42680042 |
tatttcgacctggacgttttcggtatgcgcctaataaccaacgaatggcaagtgcttttccttgtgtggatcctatttcaacgggaacttgatgagtcga |
42679943 |
T |
|
| Q |
443 |
tccgcttacgcgtcttgttttta |
465 |
Q |
| |
|
||||||||||||||||| ||||| |
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| T |
42679942 |
tccgcttacgcgtcttgctttta |
42679920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 10 - 231
Target Start/End: Complemental strand, 47522829 - 47522608
Alignment:
| Q |
10 |
tccaagaaaataccaaaaattcctcgttatatatatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctatttcgtctttcgttt |
109 |
Q |
| |
|
||||| ||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47522829 |
tccaaaaaaataccaaacattcctggttatttatatttattcttaagcaagtccccaaaagtgtttagttgagccatcatttctatttcgtctttcgttt |
47522730 |
T |
|
| Q |
110 |
cgatagatatatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatc |
209 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
47522729 |
cgataaatatatcgattaattccgattctttttctatcgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtacatagatc |
47522630 |
T |
|
| Q |
210 |
ctgctcatggattaacgaaaat |
231 |
Q |
| |
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|| ||||||||||||||||||| |
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| T |
47522629 |
ctactcatggattaacgaaaat |
47522608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 203 - 433
Target Start/End: Complemental strand, 192063 - 191833
Alignment:
| Q |
203 |
atagatcctgctcatggattaacgaaaatgtgcagaagctctatttgcctctgccattctatgagtctcttgctttttgcgtatggcatcgccactccct |
302 |
Q |
| |
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|||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| | ||||||||| |
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| T |
192063 |
atagattctgttcatggattaacgaaaatgtgcaagagctctatttgcctctgccattctatgagtcgcttcctttttgcgtatggcacccccactccct |
191964 |
T |
|
| Q |
303 |
ttggcagcatccactaattcggaacttaatttgaaagccatatttcgacccggacgttttcgggatgcgcctaataaccaacgaatggcaagtgcttttc |
402 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||| |
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| T |
191963 |
ttggcagcatctactaattcggaacttaatttgaaagccatatttcgacccggacgcttttgggatgcttctaataaccaacgaatggcaagtgctcttc |
191864 |
T |
|
| Q |
403 |
cttgtgtggatcctatttcaacgggaacttt |
433 |
Q |
| |
|
||||| | ||||||||||||| |||||||| |
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| T |
191863 |
cttgtttagatcctatttcaatcggaacttt |
191833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 43 - 164
Target Start/End: Original strand, 35934647 - 35934768
Alignment:
| Q |
43 |
tatttattcttaagcaagtccccaaaagt-gcttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattccgattctttt |
141 |
Q |
| |
|
||||||||||||||||||||| ||||||| | |||||| |||||||| |||||||| |||||||||||||||||||||||| ||||||| |||| |||| |
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| T |
35934647 |
tatttattcttaagcaagtcctcaaaagttggttagttaagccatcaattctattt-gtctttcgtttcgatagatatatctattaattatgattatttt |
35934745 |
T |
|
| Q |
142 |
tctattgattcttttccaattat |
164 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
35934746 |
tctattgattcttttccaattat |
35934768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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