View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6607_low_5 (Length: 411)
Name: NF6607_low_5
Description: NF6607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6607_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 52531168 - 52530914
Alignment:
| Q |
15 |
ctttgtttgttgaggctttcatgtctatcactgctcaagaattacttgaaccttctaagttgccatacaagtcatggagaaagttcacttataaggtgga |
114 |
Q |
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| T |
52531168 |
ctttgtttgttgaggctttcatgtctatcactgctcaagaattacttgaaccttctaagttgccaaacaagtcatggagaaagttcacttataaggtgga |
52531069 |
T |
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| Q |
115 |
atctcaaagtttcttagatgttcctcctcttatagttcaggtcagattcttcattcttatgctaattgttcatttttcaaactcttatttctattcaatg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52531068 |
atctcaaagtttcttagatgttcctcctcttatagttcaggtcagattcttcattcttatgctaattgttcatttttcaaactcttatttctattcaatg |
52530969 |
T |
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| Q |
215 |
aacttatgaaacttcttcccctga---tcatatgtaatgtcattcatttatttcc |
266 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
52530968 |
aacttatgaaacttcttcccctgatcatcatatgtaatgtcattcatttatttcc |
52530914 |
T |
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