View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6608_low_1 (Length: 647)
Name: NF6608_low_1
Description: NF6608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6608_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 520; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 19 - 638
Target Start/End: Original strand, 33140685 - 33141304
Alignment:
| Q |
19 |
gctggtgctctagcaaatgatgccgctattaagcagacgaagacttcaattgacctgttttgcttggagtctcaacagccaaatgtggttaacaactttt |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33140685 |
gctggtgctctagcaaatgatgccgctattaagcagacgaagacttcaattgacctgttttgcttggagtctcaacagccaaatgtggttaacaacttct |
33140784 |
T |
|
| Q |
119 |
ggaaaaaggtagaaagtttgtttgtgaccaagatgcatgagaaaacaaacactgttacacagcaggttgagaaattgctttcatacaagaatgagacagg |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| || |
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| T |
33140785 |
ggaaaaaggtagaaagtttgtttgtgaccaagatgcatgagaaaacaaacactgtaacacaacaggttgagaaattgctttcttacaagaatgagactgg |
33140884 |
T |
|
| Q |
219 |
atgggcaattgtaaccaaagggtctattgtgacttctgttggtcatgggactacagctttgaagacagtgtccgagtttgacaaatggaaagatgtggca |
318 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33140885 |
gtgggcaattgtaaccaaagggtctattgtgacttctgttggtcatgggacttcagttttgaagacagtgtccgagtttgacaaatggaaagatgtggcg |
33140984 |
T |
|
| Q |
319 |
atcaataaaggctttgaattcgcatttagagaacatcatcacaaggttgctagtaccgttcatatttgctctcaccttgagattcctaatgttgctggaa |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33140985 |
atcaataaaggctttgaattcgcatttagagaacatcatcacaaggttgctagtaccgttcatatttgctctcaccttgagattcctaatgttgctggga |
33141084 |
T |
|
| Q |
419 |
aaattccagattttatcgagtgtccagattgtcaccgcacaatggaagtgtttattagctacaagtgttgccataatggggataaggccaatggtgagca |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| || |
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| T |
33141085 |
aaattccagattttatcgagtgtccagattgtcaccgcacaatggaagtgtttattagctacaagtgttgccataatggcgataaggttaatgctgaaca |
33141184 |
T |
|
| Q |
519 |
ttagctagcttcaccggtctttggcatcggtaaactatgtgtcctatgtttaattattgcattttcttcttagtcttgctcatggtcatttgagtgtgaa |
618 |
Q |
| |
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|||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||| |
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| T |
33141185 |
ttagctagcttcactggtctttggcatcggcaaactatatgtcctatgtttaattattgcattttcttcttggtcttctttatggtcatttgagtgtgag |
33141284 |
T |
|
| Q |
619 |
atcatctctgtcagtattat |
638 |
Q |
| |
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||||||| ||||||| |||| |
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| T |
33141285 |
atcatctttgtcagttttat |
33141304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 33 - 497
Target Start/End: Original strand, 33159319 - 33159783
Alignment:
| Q |
33 |
aaatgatgccgctattaagcagacgaagacttcaattgacctgttttgcttggagtctcaacagccaaatgtggttaacaacttttggaaaaaggtagaa |
132 |
Q |
| |
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|||||||||| ||||||||||||| || ||||| ||||| || ||||||||||||||||||| | |||||||||||||| |||||||||||||||||| |
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| T |
33159319 |
aaatgatgccactattaagcagacaaacacttccattgagttgatttgcttggagtctcaacaacaaaatgtggttaacaccttttggaaaaaggtagag |
33159418 |
T |
|
| Q |
133 |
agtttgtttgtgaccaagatgcatgagaaaacaaacactgttacacagcaggttgagaaattgctttcatacaagaatgagacaggatgggcaattgtaa |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| |||||| |||| ||||||||||||| |
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| T |
33159419 |
agtttgtttgtgaccaagatgcatgagaaaacaaactctgttacacaacaggttgagaaattgctttcttacaaaaatgagtcagggtgggcaattgtaa |
33159518 |
T |
|
| Q |
233 |
ccaaagggtctattgtgacttctgttggtcatgggactacagctttgaagacagtgtccgagtttgacaaatggaaagatgtggcaatcaataaaggctt |
332 |
Q |
| |
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||||||| |||||||||| | ||||||||||||||||||||| |||||||||| | | ||||||| || |||||||| || | | || || ||||| |
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| T |
33159519 |
ccaaaggttctattgtgattgctgttggtcatgggactacagttttgaagacatttgcagagtttggcacatggaaaggtgatgtgagcaccaagggctt |
33159618 |
T |
|
| Q |
333 |
tgaattcgcatttagagaacatcatcacaaggttgctagtaccgttcatatttgctctcaccttgagattcctaatgttgctggaaaaattccagatttt |
432 |
Q |
| |
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||||| | |||||||||| ||||| ||| | |||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| |
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| T |
33159619 |
tgaatactcatttagagagtatcataacacgattgctagttctgttcatatttgctctcaccttgagattcctaatgttgatggaaaaatcccagacttt |
33159718 |
T |
|
| Q |
433 |
atcgagtgtccagattgtcaccgcacaatggaagtgtttattagctacaagtgttgccataatgg |
497 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| |
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| T |
33159719 |
attaagtgtccagattgtcaccgcacaatggaagtgtatatcagctacaagtgctgccataatgg |
33159783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 33 - 497
Target Start/End: Original strand, 33182163 - 33182627
Alignment:
| Q |
33 |
aaatgatgccgctattaagcagacgaagacttcaattgacctgttttgcttggagtctcaacagccaaatgtggttaacaacttttggaaaaaggtagaa |
132 |
Q |
| |
|
|||||||||| ||||||||||||| || ||||| ||||| || ||||||||||||||||||| | |||||||||||||| |||||||||||||||||| |
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| T |
33182163 |
aaatgatgccactattaagcagacaaacacttccattgagttgatttgcttggagtctcaacaacaaaatgtggttaacaccttttggaaaaaggtagag |
33182262 |
T |
|
| Q |
133 |
agtttgtttgtgaccaagatgcatgagaaaacaaacactgttacacagcaggttgagaaattgctttcatacaagaatgagacaggatgggcaattgtaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| |||||| |||| ||||||||||||| |
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| T |
33182263 |
agtttgtttgtgaccaagatgcatgagaaaacaaactctgttacacaacaggttgagaaattgctttcttacaaaaatgagtcagggtgggcaattgtaa |
33182362 |
T |
|
| Q |
233 |
ccaaagggtctattgtgacttctgttggtcatgggactacagctttgaagacagtgtccgagtttgacaaatggaaagatgtggcaatcaataaaggctt |
332 |
Q |
| |
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||||||| |||||||||| | ||||||||||||||||||||| |||||||||| | | ||||||| || |||||||| || | | || || ||||| |
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| T |
33182363 |
ccaaaggttctattgtgattgctgttggtcatgggactacagttttgaagacatttgcagagtttggcacatggaaaggtgatgtgagcaccaagggctt |
33182462 |
T |
|
| Q |
333 |
tgaattcgcatttagagaacatcatcacaaggttgctagtaccgttcatatttgctctcaccttgagattcctaatgttgctggaaaaattccagatttt |
432 |
Q |
| |
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|||| | |||||||||| ||||| ||| | |||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| |
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| T |
33182463 |
tgaacactcatttagagagtatcataacacgattgctagttctgttcatatttgctctcaccttgagattcctaatgttgatggaaaaatcccagacttt |
33182562 |
T |
|
| Q |
433 |
atcgagtgtccagattgtcaccgcacaatggaagtgtttattagctacaagtgttgccataatgg |
497 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| |
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|
| T |
33182563 |
attaagtgtccagattgtcaccgcacaatggaagtgtatatcagctacaagtgctgccataatgg |
33182627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 28 - 504
Target Start/End: Complemental strand, 33287418 - 33286936
Alignment:
| Q |
28 |
ctagcaaatgatgccgctattaagcagacgaagacttcaattgacctgttttgcttggagtctcaacagccaaatgtggttaacaacttttggaaaaagg |
127 |
Q |
| |
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|||||||||||| | |||||||||| | |||||||||||||| |||| |||||||||||||| ||||||||||||||||||| ||||||| ||||| |
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| T |
33287418 |
ctagcaaatgatacaaatattaagcaggcaaagacttcaattgagttgttaagcttggagtctcaaaagccaaatgtggttaacaaattttggacaaagg |
33287319 |
T |
|
| Q |
128 |
tagaaagtttgtttgtgaccaagatgcatgagaa------aacaaacactgttacacagcaggttgagaaattgctttcatacaagaatgagacaggatg |
221 |
Q |
| |
|
| || ||||||||| | ||||||||| || | || |||| ||| ||| | ||| |||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
33287318 |
tggagagtttgtttctcaccaagatgaataataatgatacaacagacagtgtaaaacaacaggttgagaaattgctttcgtacaagaatgagacagggtg |
33287219 |
T |
|
| Q |
222 |
ggcaattgtaaccaaagggtctattgtgacttctgttggtcatgggactacagctttgaagacagtgtccgagtttgacaaatggaaagatgtggcaatc |
321 |
Q |
| |
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|||||||||||||||||| |||||||||| | ||||||| ||||| ||||||| | ||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
33287218 |
ggcaattgtaaccaaaggttctattgtgattgctgttggccatggtactacagtgtcgaaaacagtgtccgagtttgacaaatggaaagaagtggcaatt |
33287119 |
T |
|
| Q |
322 |
aataaaggctttgaattcgcatttagagaacatcatcacaaggttgctagtaccgttcatatttgctctcaccttgagattcctaatgttgctggaaaaa |
421 |
Q |
| |
|
|| || ||||||||| ||||||| ||||||||| | ||||||||| | || ||||| ||||||||||||||||||||| ||| ||||||||||||| |
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| T |
33287118 |
aaaaagggctttgaacatgcatttaatgaacatcataagaaggttgctccttcctttcatctttgctctcaccttgagattcataaagttgctggaaaaa |
33287019 |
T |
|
| Q |
422 |
ttccagattttatcgagtgtccagattgtcaccgcacaatggaagtgtttattagctacaagtgttgccataatggggataag |
504 |
Q |
| |
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| ||||||||| | |||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| ||| ||||||| |
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|
| T |
33287018 |
tcccagattttgttgagtgtccagattgtcgtcgcagaatggaagtgtttattacctacaagtgttgccatgatgaggataag |
33286936 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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