View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6608_low_2 (Length: 557)
Name: NF6608_low_2
Description: NF6608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6608_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 11 - 547
Target Start/End: Original strand, 43918716 - 43919251
Alignment:
| Q |
11 |
cagagatgtaaataagtcatttaaactacgcttttatatgaagctctttgcaatatttttgctctcaagtttgccatgttgaataagattatgatattta |
110 |
Q |
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| T |
43918716 |
cagagatgtaaataaatcatttaaactacgcttttatatgaagctctttgcaatatttttgctctcaagtttgccatgttgaataagattatgatattta |
43918815 |
T |
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| Q |
111 |
accaatgtcagggttacagatcatgaggcagattgtgacttcatgacaaagaagggataccaaaggaaggatggtaagaaatcttccttgaataaactga |
210 |
Q |
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| T |
43918816 |
accaatgtcagggttacagatcatgaggcagattgtgacttcatgacaaagaagggataccaaaggaaggatggtaagaaatcttccttgaataaactga |
43918915 |
T |
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| Q |
211 |
taagaaaataagcaactgagagaaacagatttctatttagaacttttctttttgtgaatactttacctgtctatatatgaaaatgagagcgtgtcatttg |
310 |
Q |
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| T |
43918916 |
taagaaaataagcaactgagagaaacagatttctatttagaacttttctttttgtgaatactttacctgtctatatatgaaaatgagagcgtgtcatttg |
43919015 |
T |
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| Q |
311 |
attttgaatgaagattctgagtaagttctaagattctagaagattctcagttacatatataggtgtaacaaacctagctctctgttaggaactagttatt |
410 |
Q |
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| T |
43919016 |
attttgaatgaagattctgagtaagttctaagattctagaagattctcagttacatatataggtgtaacaaacctagctctttgttgggaactagttatt |
43919115 |
T |
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| Q |
411 |
ttctgctatgattgtaaacttgggtatgtgtatagaatacctctttgttattttctgcttcagaatacaattttagattcggatacgtatctccactctc |
510 |
Q |
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| T |
43919116 |
ttctgctatgattgtaaacttgggtatgtgtatagaatacctctttgttattttctgcttcagaatacaattttagattcggatacgtatctccactctc |
43919215 |
T |
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| Q |
511 |
tctctcaatagaaaacattaaattagaaacaaaggca |
547 |
Q |
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| T |
43919216 |
tctctcaatagaaaacattaaattag-aacaaaggca |
43919251 |
T |
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