View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6608_low_4 (Length: 329)
Name: NF6608_low_4
Description: NF6608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6608_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 6997934 - 6997634
Alignment:
| Q |
18 |
acatgaagattaaaaattagaaatttgcgaatagaggcacatgaagattagaaattccttattgagctggtaattataatcgcatacacttgcacatatt |
117 |
Q |
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| T |
6997934 |
acatgaagattaaaaattagaaatttgcgaatagaggcacatgaagattagaaattccttattgagctggtaattataatcgcatacacttgcacatatt |
6997835 |
T |
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| Q |
118 |
acaaatgtgccagaaattagtgagtcaactgtttcggcttatatgagtgtaaatgcaggtatattaaatatttattgaggtaactgataagacatgtgca |
217 |
Q |
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| T |
6997834 |
acaaatgtgccagaaattagtgagtcaactgtttcggcttatatgagtgtaaatgcaggtatattaaatatttattgaggtaactgataagacatgtgca |
6997735 |
T |
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| Q |
218 |
tggattaaaggaacaatcaaacaattctctgtttaccaaaacataagagaaattttcaaccatctctcaagttatgatgaaaaaccatcaactatcttct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6997734 |
tggattaaaggaacaatcaaacaattctctgtttaccaaaacataagagaaattttcaaccatctctcaagttatgatgaaaaaccatcaactatcttct |
6997635 |
T |
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| Q |
318 |
t |
318 |
Q |
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| T |
6997634 |
t |
6997634 |
T |
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