View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6608_low_5 (Length: 234)
Name: NF6608_low_5
Description: NF6608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6608_low_5 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0384 (1 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 15755772 - 15756005
Alignment:
| Q |
1 |
tcttcattacgtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagttgaaatcgctttgggaagagcttaattttc |
100 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
15755772 |
tcttcattatgtactactatcaacaatttgaaacaaggaaccaagtttgtgcttgaatacttcactgagttgaaatcactttgggaagagcttaattctc |
15755871 |
T |
|
| Q |
101 |
atcgtcctatgactatatgaacttgtcctcatccctgtcgctgtgaatccatgcgatcagctcaaaattttcatttggaggaccaaatcattcaatttct |
200 |
Q |
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|| |||||||| |||| || |||||||||||||||||||| |||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
15755872 |
attgtcctatgcctatgtgcacttgtcctcatccctgtcgttgtgaatccatgagatcagctcgaaattttcgtttggaggaccaaatcattcaatttct |
15755971 |
T |
|
| Q |
201 |
cactagtttgaatgataattttggagttgtgaaa |
234 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |
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| T |
15755972 |
cactggtttgaatgataattttggagttgtgaaa |
15756005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 233
Target Start/End: Complemental strand, 18945745 - 18945565
Alignment:
| Q |
52 |
cttgaatacttcactgagttgaaatcgctttgggaagagcttaattttcatcgtcctatgactatatgaacttgtcctcatccctgtcgctgtgaatcca |
151 |
Q |
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||||| |||||||| ||| ||||||| |||||||| |||||||| | ||||| ||| ||| |||| || ||||||||| |||| || || |||||||||| |
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| T |
18945745 |
cttgattacttcacagagatgaaatccctttgggaggagcttaactctcatc-tcccatgcctatgtgtacttgtccttatccatgccgttgtgaatcca |
18945647 |
T |
|
| Q |
152 |
tgcgatcagctcaaaattttcatttggaggaccaaatcattcaatttctcactagtttgaatgataattttggagttgtgaa |
233 |
Q |
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|||| | |||| |||||| |||| || ||| | ||||||||||||||| |||||||||| |||||| ||||||||| |
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| T |
18945646 |
tgcgtactgctcgcaattttagaatggaagatcaagtgattcaatttctcactggtttgaatgacaatttttcagttgtgaa |
18945565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 2 - 234
Target Start/End: Original strand, 1111 - 1343
Alignment:
| Q |
2 |
cttcattacgtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagttgaaatcgctttgggaagagcttaattttca |
101 |
Q |
| |
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||||||||||| | |||||||||||||||||||| |||| || |||||||||||||||||||||||| ||||||| |||||||||||||| |||| || |
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| T |
1111 |
cttcattacgttcatctatcaacaatttgaaacaacgaacaaagtttgtgcttgaatacttcactgagatgaaatctctttgggaagagctcaattccca |
1210 |
T |
|
| Q |
102 |
tcgtcctatgactatatgaacttgtcctcatccctgtcgctgtgaatccatgcgatcagctcaaaattttcatttggaggaccaaatcattcaatttctc |
201 |
Q |
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||| |||||| || | || |||||||||||||||| ||| |||||||| ||| | ||| | | | | |||| ||||||||||||| | |||||||| || |
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| T |
1211 |
tcgccctatgcctgtgtgtacttgtcctcatccctatcgttgtgaatctatgaggtcaacacgagaatttcgtttggaggaccaagtgattcaattccta |
1310 |
T |
|
| Q |
202 |
actagtttgaatgataattttggagttgtgaaa |
234 |
Q |
| |
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||| |||||||||| || ||||||||||||||| |
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| T |
1311 |
actggtttgaatgacaactttggagttgtgaaa |
1343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 13139609 - 13139395
Alignment:
| Q |
20 |
tcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagttgaaatcgctttgggaagagcttaattttcatcgtcctatgactatatg |
119 |
Q |
| |
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||||||| |||||||||||||| || | ||||||||| ||||| |||||| || |||| ||||| |||| || |||| |||||| || || |||| || |
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| T |
13139609 |
tcaacaacttgaaacaaggaacaaaatatgtgcttgattactttactgagatgtaatctctttgttaagaactcaattctcatcgcccaatacctatgtg |
13139510 |
T |
|
| Q |
120 |
aacttgtcctcatccctgtcgctgtgaatccatgcgatcagctcaaaattttcatttggaggaccaaatcattcaatttctcactagtttgaatgataat |
219 |
Q |
| |
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|||| ||||||||| ||||| |||||||||||| |||| | ||| ||||||| ||| |||| || ||||||| ||||||||| |||||||| ||| |
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| T |
13139509 |
cacttatcctcatccttgtcgttgtgaatccatgagatcggttcataattttcgtttagaggttcaggtcattcagtttctcactgacttgaatgagaat |
13139410 |
T |
|
| Q |
220 |
tttggagttgtgaaa |
234 |
Q |
| |
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||||||||| ||||| |
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| T |
13139409 |
tttggagttatgaaa |
13139395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 20071689 - 20071755
Alignment:
| Q |
7 |
ttacgtactgctatcaacaatttgaaacaaggaaccaattttgtgcttgaatacttcactgagttga |
73 |
Q |
| |
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|||||| || |||||| || |||||||||| || |||||||||||||| |||||||||||||||| |
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| T |
20071689 |
ttacgttcttctatcagtaagttgaaacaagatacaaattttgtgcttgactacttcactgagttga |
20071755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 230
Target Start/End: Original strand, 17118711 - 17118820
Alignment:
| Q |
121 |
acttgtcctcatccctgtcgctgtgaatccatgcgatcagctcaaaattttcatttggaggaccaaatcattcaatttctcactagtttgaatgataatt |
220 |
Q |
| |
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|||||| |||| || ||||| |||||||||||| |||| |||| |||||| ||||||||| || ||||||| ||| | ||| | |||||||||| || |
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| T |
17118711 |
acttgtgctcacccttgtcgttgtgaatccatgagatcggctcgcaatttttgtttggaggatgaagtcattcagtttttgactcgcttgaatgatactt |
17118810 |
T |
|
| Q |
221 |
ttggagttgt |
230 |
Q |
| |
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||| |||||| |
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| T |
17118811 |
ttgaagttgt |
17118820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 221
Target Start/End: Complemental strand, 19806025 - 19805856
Alignment:
| Q |
52 |
cttgaatacttcactgagttgaaatcgctttgggaagagcttaattttcatcgtcctatgactatatgaacttgtcctcatccctgtcgctgtgaatcca |
151 |
Q |
| |
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||||| |||||||| ||| ||||||| |||||||| ||||| |||| ||||| |||||| || ||| |||||||| |||| ||||||||||| || |
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| T |
19806025 |
cttgattacttcacagagatgaaatctctttgggaggagctcaattcacatcgccctatgcctgcatgcacttgtccctatccatgtcgctgtgagtctg |
19805926 |
T |
|
| Q |
152 |
tgcgatcagctcaaaattttcatttggaggaccaaatcattcaatttctcactagtttgaatgataattt |
221 |
Q |
| |
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|||| | ||| || | ||||| |||| || || | ||||||||||||||||| |||||||||||||| |
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|
| T |
19805925 |
tgcgtgctgctaaagaatttcacatggaagattaagtgattcaatttctcactagattgaatgataattt |
19805856 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 16992528 - 16992425
Alignment:
| Q |
52 |
cttgaatacttcactgagttgaaatcgctttgggaagagcttaattttcatcgtcctatgactatatgaacttgtcctcatccctgtcgctgtgaatcca |
151 |
Q |
| |
|
||||| || ||||| ||| ||||||| |||||||| ||||| |||| |||||||||||| |||| || |||||||| ||||| || || |||||||| | |
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| T |
16992528 |
cttgactatttcacagagatgaaatctctttgggaggagctcaattcacatcgtcctatgcctatgtgcacttgtccacatccatgccgttgtgaatcta |
16992429 |
T |
|
| Q |
152 |
tgcg |
155 |
Q |
| |
|
|||| |
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|
| T |
16992428 |
tgcg |
16992425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 26470489 - 26470592
Alignment:
| Q |
52 |
cttgaatacttcactgagttgaaatcgctttgggaagagcttaattttcatcgtcctatgactatatgaacttgtcctcatccctgtcgctgtgaatcca |
151 |
Q |
| |
|
||||| |||||||| ||| | ||||| || ||||| || ||||||| ||||||||| ||| |||| || ||||||||| |||| || || |||||||||| |
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| T |
26470489 |
cttgattacttcacagagatcaaatctctatgggaggaacttaattctcatcgtcccatgcctatgtgtacttgtccttatccttgccgttgtgaatcca |
26470588 |
T |
|
| Q |
152 |
tgcg |
155 |
Q |
| |
|
|||| |
|
|
| T |
26470589 |
tgcg |
26470592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 55308548 - 55308651
Alignment:
| Q |
52 |
cttgaatacttcactgagttgaaatcgctttgggaagagcttaattttcatcgtcctatgactatatgaacttgtcctcatccctgtcgctgtgaatcca |
151 |
Q |
| |
|
||||| |||||||| ||| | ||||| || ||||| || ||||||| ||||||||| ||| |||| || ||||||||| |||| || || |||||||||| |
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|
| T |
55308548 |
cttgattacttcacagagatcaaatctctatgggaggaacttaattctcatcgtcccatgcctatgtgtacttgtccttatccttgccgttgtgaatcca |
55308647 |
T |
|
| Q |
152 |
tgcg |
155 |
Q |
| |
|
|||| |
|
|
| T |
55308648 |
tgcg |
55308651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 13129202 - 13129284
Alignment:
| Q |
73 |
aaatcgctttgggaagagcttaattttcatcgtcctatgactatatgaacttgtcctcatccctgtcgctgtgaatccatgcg |
155 |
Q |
| |
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||||| |||||||| || ||||||| ||||||||| ||| |||| || ||||||||| |||| || || |||||||||||||| |
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|
| T |
13129202 |
aaatctctttgggaggaacttaattctcatcgtcccatgcctatgtgtacttgtccttatccttgccgttgtgaatccatgcg |
13129284 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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