View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6609_high_1 (Length: 378)
Name: NF6609_high_1
Description: NF6609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6609_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 360
Target Start/End: Original strand, 37469516 - 37469861
Alignment:
| Q |
16 |
attgaccgaaaacaaacaggctcaaagaaggcaaggcaaactcgtcc-tttgttgttcagattagggttttggaattaaattcaaggttatgttaatcaa |
114 |
Q |
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| T |
37469516 |
attgaccgaaaacaaacaggctcaaagaaagcaaggcaaactcgtccctttgttgttcagattagggttttggaattaaattcaaggttatgttaatcaa |
37469615 |
T |
|
| Q |
115 |
cgcttcctccagaatgaatctcgtctacgatgtgaggcttccttcatcctccagaatgaatctctccaatggcgtgaggcttcgctcatcatctcatccc |
214 |
Q |
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| T |
37469616 |
cgcttcctccagaatgaatctcgcctacagtatgaggcttccttcatcctccagaatgaatctctccaatggcgcgaggcttcgctcatcatctcatccc |
37469715 |
T |
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| Q |
215 |
tgcaaatccgtatgatctatctctctcatccattttattttcggtttaactttttcggtggtgaatttcagatacatgatgtaggagttttccacaggac |
314 |
Q |
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| T |
37469716 |
tgcaaatccgtatgatctatctctctcatccattttattttcggtttaactttttcggtggtgaatttcagatacatgatgtaggagttttccacaggac |
37469815 |
T |
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| Q |
315 |
attggattatggattttccagagttattgatggaggaggtatattc |
360 |
Q |
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| T |
37469816 |
attggattatggattttccagagttatcgacagaggaggtatattc |
37469861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 33004154 - 33004035
Alignment:
| Q |
104 |
atgttaatcaacgcttcctccagaatgaatctcgtctacgatgtgaggcttccttcatcctccagaatgaatctctccaatggcgtgaggcttcgctcat |
203 |
Q |
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| T |
33004154 |
atgttaatcaatgcttcctccagaatgaatctctccaatggcttgaggcttccttcatcttccagaatgaatttctccaacggcgtgaggcttcgctcat |
33004055 |
T |
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| Q |
204 |
catctcatccctgcaaatcc |
223 |
Q |
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| T |
33004054 |
catctcatccctgcaaatcc |
33004035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 33004032 - 33003979
Alignment:
| Q |
288 |
acatgatgtaggagttttccacaggacattggattatggattttccagagttat |
341 |
Q |
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| T |
33004032 |
acatgatgtaggagtattctataggtcattggattatggactttccagagttat |
33003979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 17595049 - 17594930
Alignment:
| Q |
104 |
atgttaatcaacgcttcctccagaatgaatctcgtctacgatgtgaggcttccttcatcctccagaatgaatctctccaatggcgtgaggcttcgctcat |
203 |
Q |
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|||||||||||||||||||||| ||||||||| || | |||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
17595049 |
atgttaatcaacgcttcctccaagatgaatctctcgtatggcgtgacgcttccttcatcctccagtatgagtctctccaatggcgtgaggcttcgctcat |
17594950 |
T |
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| Q |
204 |
catctcatccctgcaaatcc |
223 |
Q |
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||||||||| |||||||||| |
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| T |
17594949 |
catctcatctctgcaaatcc |
17594930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 278 - 354
Target Start/End: Complemental strand, 40736034 - 40735958
Alignment:
| Q |
278 |
aatttcagatacatgatgtaggagttttccacaggacattggattatggattttccagagttattgatggaggaggt |
354 |
Q |
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| T |
40736034 |
aatttcagatacttgatgtaggagtgttccacaggacattggattacggagttttcagagttatcgaaggaggaggt |
40735958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 87 - 162
Target Start/End: Complemental strand, 40736145 - 40736070
Alignment:
| Q |
87 |
gaattaaattcaaggttatgttaatcaacgcttcctccagaatgaatctcgtctacgatgtgaggcttccttcatc |
162 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |||||||||||||||| | | | ||||||||||||||||| |
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| T |
40736145 |
gaattcaattcaaggttatgttaatcaacgcttactccagaatgaatctctccaatggcgtgaggcttccttcatc |
40736070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 40736111 - 40736068
Alignment:
| Q |
163 |
ctccagaatgaatctctccaatggcgtgaggcttcgctcatcat |
206 |
Q |
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| T |
40736111 |
ctccagaatgaatctctccaatggcgtgaggcttccttcatcat |
40736068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 327
Target Start/End: Complemental strand, 52084341 - 52084258
Alignment:
| Q |
240 |
tcatccattttattttcggtttaactttttcggtggtgaatttcagatacatgatgtaggagttttccacaggacattggattatgga |
327 |
Q |
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||||||||||||||||| | ||| ||||| || ||||||||||||||| |||| |||||| ||||| ||||||||||||| |||| |
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| T |
52084341 |
tcatccattttattttctgcttatctttt-cgttggtgaatttcagatctatga---aggagtgttccataggacattggattctgga |
52084258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 327
Target Start/End: Complemental strand, 52093704 - 52093621
Alignment:
| Q |
240 |
tcatccattttattttcggtttaactttttcggtggtgaatttcagatacatgatgtaggagttttccacaggacattggattatgga |
327 |
Q |
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| T |
52093704 |
tcatccattttattttctgcttatctttt-cgttggtgaatttcagatctatga---aggagtgttccataggacattggattctgga |
52093621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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