View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6609_low_2 (Length: 363)
Name: NF6609_low_2
Description: NF6609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6609_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 12658668 - 12658474
Alignment:
| Q |
15 |
aacttttgcttcattatagccgagactttggcaggatcagcagcatggcttgctagaggtctgtcttgtgtcgactgtgcacagaaaagagataacgatg |
114 |
Q |
| |
|
|||||||| ||| ||||||||||| | |||||||||||| ||||||||||| ||||||| ||||||||||| ||||| || | |||||||| |||| |
|
|
| T |
12658668 |
aacttttgtttcgttatagccgaggatctggcaggatcagtagcatggcttggtagaggtttgtcttgtgtc---tgtgcgcaaataagagatagtgatg |
12658572 |
T |
|
| Q |
115 |
cttctagcttttatgatttaactcttgtccaagtaatatttttataatttttactaaactagcttttagtttatgttttgagtgtttctaattctcataa |
214 |
Q |
| |
|
|||||||||||| ||| ||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12658571 |
cttctagcttttctgaattaactctt----aagcaatatttttataattt--actaaactagcttttagtttatgttttgagtgtttctaattctggtaa |
12658478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 348
Target Start/End: Complemental strand, 12658347 - 12658244
Alignment:
| Q |
248 |
cttgagactttaacgtacatattataggaagcccttaaggctttatggaaggttgcatttcct---gaacaactatgtggcttgatatcaaagcagtgga |
344 |
Q |
| |
|
||||||||||||| || ||||||||||| ||| |||||| |||||||||||||| ||| || ||| |||| | ||||||||||||| ||||||||| |
|
|
| T |
12658347 |
cttgagactttaatgtggatattataggaggcctttaaggtattatggaaggttgccttttctaaagaagaactctatggcttgatatcagagcagtgga |
12658248 |
T |
|
| Q |
345 |
agga |
348 |
Q |
| |
|
|||| |
|
|
| T |
12658247 |
agga |
12658244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 43 - 209
Target Start/End: Original strand, 1337201 - 1337361
Alignment:
| Q |
43 |
tggcaggatcagcagcatggcttgctagaggtctgtcttgtgtcgactgtgcacagaaaagagataacgatgcttctagcttttatgatttaactcttgt |
142 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||| |||||| |||||||| ||||||||||| | |
|
|
| T |
1337201 |
tggcaggatcagcagcatggcttggtagaggtctgtcttgtgt---ctgtgcacagagaagagatagcgatgcgggtagctttttcgatttaactctagc |
1337297 |
T |
|
| Q |
143 |
ccaagtaatatttttataatttttactaaactagcttttagtttatgttttgagtgtttctaattct |
209 |
Q |
| |
|
||| ||||||||||||||| ||| | || |||||||| |||||||||| ||| ||||||||||| |
|
|
| T |
1337298 |
ccaggtaatatttttataa---ttaatcaagaagcttttaatttatgtttttagtatttctaattct |
1337361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 244 - 348
Target Start/End: Original strand, 1338019 - 1338126
Alignment:
| Q |
244 |
atgtcttgagactttaacgtacatattataggaagcccttaaggctttatggaaggttgcatttcctgaacaa---ctatgtggcttgatatcaaagcag |
340 |
Q |
| |
|
||||||| ||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||| || || ||||||||||||| ||||| |
|
|
| T |
1338019 |
atgtcttaagactttaatgtacatattacaggaggcccttaaggctttatggaaggttgcatttcctgaagaagaacttcgtggcttgatatcggagcag |
1338118 |
T |
|
| Q |
341 |
tggaagga |
348 |
Q |
| |
|
|||||||| |
|
|
| T |
1338119 |
tggaagga |
1338126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 348
Target Start/End: Complemental strand, 8589375 - 8589275
Alignment:
| Q |
247 |
tcttgagactttaacgtacatattataggaagcccttaaggctttatggaaggttgcatttcctgaacaactatgtggcttgatatcaaagcagtggaag |
346 |
Q |
| |
|
|||||||||||||| ||||||||| | || |||||||||| |||||||||||||||||| || || |||| ||||||||||||||| || |||||||| |
|
|
| T |
8589375 |
tcttgagactttaatgtacatattgtcagagacccttaaggcattatggaaggttgcattt-ctaaagaactttgtggcttgatatcagagtagtggaag |
8589277 |
T |
|
| Q |
347 |
ga |
348 |
Q |
| |
|
|| |
|
|
| T |
8589276 |
ga |
8589275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 8589524 - 8589479
Alignment:
| Q |
164 |
tttactaaactagcttttagtttatgttttgagtgtttctaattct |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8589524 |
tttactaaactagcttttagtttatgttttgagtgtttctaattct |
8589479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 8589625 - 8589570
Alignment:
| Q |
30 |
atagccgagactttggcaggatcagcagcatggcttgctagaggtctgtcttgtgt |
85 |
Q |
| |
|
|||| |||| || ||||||||| |||||||||||||||||||||| || ||||||| |
|
|
| T |
8589625 |
atagtcgaggctctggcaggatgagcagcatggcttgctagaggtatgccttgtgt |
8589570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 348
Target Start/End: Complemental strand, 32838896 - 32838835
Alignment:
| Q |
290 |
ttatggaaggttgcatttcctg---aacaactatgtggcttgatatcaaagcagtggaagga |
348 |
Q |
| |
|
|||||||||||||||||||||| || |||| ||||||||||||||| || |||||||||| |
|
|
| T |
32838896 |
ttatggaaggttgcatttcctgaaaaagaactctgtggcttgatatcagagtagtggaagga |
32838835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 344
Target Start/End: Original strand, 27647068 - 27647112
Alignment:
| Q |
300 |
ttgcatttcctgaacaactatgtggcttgatatcaaagcagtgga |
344 |
Q |
| |
|
|||||||||||||| |||| |||||||| |||| ||||||||||| |
|
|
| T |
27647068 |
ttgcatttcctgaagaactttgtggctttatataaaagcagtgga |
27647112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University