View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6609_low_4 (Length: 232)
Name: NF6609_low_4
Description: NF6609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6609_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 45661018 - 45660808
Alignment:
| Q |
3 |
gcgtgtcagaaattattggatgaagggcagaatttggaaaaggaaattgcgttgtatgaacatgatagggaagcgttgatggaatttgggaacgaagctg |
102 |
Q |
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| T |
45661018 |
gcgtgtcagaaattgttggatgaagggcagaatttggaaaaggaaattgcgttgtatgaacatgatagggaagcgttgatggaatttgggaacgaagctg |
45660919 |
T |
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| Q |
103 |
atgaacgagaacgacaagctcagtcacgtgttttggaattggaaaggaatttgctcttgttgatgggtcaattgaagaaatacaagcatcaaaacaattc |
202 |
Q |
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| T |
45660918 |
atgaacgagaacgacaagctcagtcacgtgttttggaattggaaaggaatttgctcttgttgatgggtcaattgaagaaatacaagcatcaaaacaattc |
45660819 |
T |
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| Q |
203 |
aatggtaacaa |
213 |
Q |
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| T |
45660818 |
aatggtaacaa |
45660808 |
T |
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Back To:
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Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 2379762 - 2379594
Alignment:
| Q |
21 |
gatgaagggcagaatttggaaaaggaaattgcgttgtatgaacatgatagggaagcgttgatggaatttgggaacgaagctgatgaacgagaacgacaag |
120 |
Q |
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| T |
2379762 |
gatgaagggaagaatttggaaaaggaaattgcgtc-tatgaacatgatagggaagcattgatgaaatttggaaacgaagctg------gtgaacgtcatg |
2379670 |
T |
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| Q |
121 |
ctcagtcacgtgttttggaattggaaaggaatttgctcttgttgatgggtcaattgaagaaatacaagcatcaaaa |
196 |
Q |
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| T |
2379669 |
ctcaatcaagggttttggaattcaaaaggaatttgctcttgttgatggatgaattgaagaaatacaagcatcaaaa |
2379594 |
T |
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