View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6610_high_1 (Length: 338)
Name: NF6610_high_1
Description: NF6610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6610_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 11572891 - 11572584
Alignment:
| Q |
1 |
ttcaccgatcgacgccaaatctgtcaactcagactcatccaaaccttttgcttgacctaagctacaacgttcatttccgtgttttgatacggcgtcctta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11572891 |
ttcaccgatcgacgccaaatctgtcaactcagactcatccaaaccttttgcttgacctaagctacaacgttcatttccgtgttttgatacggcatcctta |
11572792 |
T |
|
| Q |
101 |
aannnnnnnatctgcataaa---attacataacataatcatagaaaaaagttagaatttgagaaagaaacgctgtaataccattgtattagtgcatgttt |
197 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11572791 |
aatttttttatctgcataaaaatattacataacataatcatagaaaaaagttagaatttgataaagaaatgctgtaataccattgtattagtgcatgttt |
11572692 |
T |
|
| Q |
198 |
agattgacagtgatactgatagaattatagtgtgtcacattggtttcgacaaactcagtattattaagcatgtttggtaagacataacgtaatcatgtta |
297 |
Q |
| |
|
||||||||||||| |||||||||| |||| | |||||||| ||||||||||| |||||||||||||| ||||| ||||||||||| |
|
|
| T |
11572691 |
agattgacagtgaatctgatagaat-------tgtccccgtggtttcg--------agtattattaaacatgtttggtaagatataacataatcatgtta |
11572607 |
T |
|
| Q |
298 |
ctgtcttattaaacatgtttggt |
320 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
11572606 |
ctgtcttattaaacatgtttggt |
11572584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University