View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6612_high_4 (Length: 521)
Name: NF6612_high_4
Description: NF6612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6612_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Original strand, 23868715 - 23869220
Alignment:
| Q |
1 |
agaagcaagaagaatgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataa |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868715 |
agaagcaagaagaatgttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaagccatgggaataa |
23868814 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868815 |
tgaacagtttcatcaatgatatcttcgagaaacttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
23868914 |
T |
|
| Q |
201 |
gactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatctaagat |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868915 |
gactgctgtcagacttgttcttcctggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatctaagat |
23869014 |
T |
|
| Q |
301 |
aatttcgttgacttttgtgggatttatttgcttggtttgatgttactttatctgatcttaggaactcttagatattttaattttttgctttcgaatttgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23869015 |
aatttcgttgacttttgtgggatttatttgcttggtttgatgttactttatctgatcttaggaactcttagatattttaaatttttgctttcgaatttgt |
23869114 |
T |
|
| Q |
401 |
agtgaagtagtaattggatctggttggtttttctgtgtatcataatgatggaatgaatgatattttgactacaaaaaatttgcatggttcaatttgctta |
500 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23869115 |
agtgaagtagtaattggatctggttggtctttctgtgtatcataatgatggaatgaatgatattttgactacaaaaaatttgcatggttcaatttgctta |
23869214 |
T |
|
| Q |
501 |
gtttct |
506 |
Q |
| |
|
|||||| |
|
|
| T |
23869215 |
gtttct |
23869220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 24307206 - 24307498
Alignment:
| Q |
1 |
agaagcaagaagaatgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataa |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307206 |
agaagcaagaagaatgttgaaacatacaagatctatatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataa |
24307305 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307306 |
tgaacagtttcatcaatgatatcttcgagaaactagctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
24307405 |
T |
|
| Q |
201 |
gactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagat |
293 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| |||||||||||||||||||| |
|
|
| T |
24307406 |
gactgctgtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcactagttcttagat |
24307498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 23453667 - 23453373
Alignment:
| Q |
1 |
agaagcaagaagaatgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || | |
|
|
| T |
23453667 |
agaagcaagaagaatgtagaaacatacaagatctacatcttcaaagttctgaatcatgttcacccagacattggtatctcaagcaaggccatgggtatca |
23453568 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23453567 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
23453468 |
T |
|
| Q |
201 |
gactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagatct |
295 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||| |||||||||||||||| |
|
|
| T |
23453467 |
gactgcagtcagtcttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttactagttcttagatct |
23453373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 23885810 - 23886102
Alignment:
| Q |
1 |
agaagcaagaagaatgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataa |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || | |
|
|
| T |
23885810 |
agaagcaagaagaatgttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatca |
23885909 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23885910 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
23886009 |
T |
|
| Q |
201 |
gactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagat |
293 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||| |||||||||||||| |
|
|
| T |
23886010 |
gactgcagtcaggcttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttagat |
23886102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 23408835 - 23408544
Alignment:
| Q |
1 |
agaagcaagaagaatgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataa |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | |
|
|
| T |
23408835 |
agaagtaagaagaatgtagaaacatacaagatctacatcttcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagcgatgggtatca |
23408736 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408735 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
23408636 |
T |
|
| Q |
201 |
gactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttaga |
292 |
Q |
| |
|
||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||||||||||||| ||||| ||||||| |
|
|
| T |
23408635 |
gaccgcggtcagacttgttcttcctggagaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttactagctcttaga |
23408544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 23416004 - 23415713
Alignment:
| Q |
1 |
agaagcaagaagaatgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataa |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || | |
|
|
| T |
23416004 |
agaagcaagaagaatgttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatca |
23415905 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415904 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
23415805 |
T |
|
| Q |
201 |
gactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttaga |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || |||||||||||||| ||||| ||||||| |
|
|
| T |
23415804 |
gactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttactagctcttaga |
23415713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 23402057 - 23402349
Alignment:
| Q |
1 |
agaagcaagaagaatgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataa |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || | |
|
|
| T |
23402057 |
agaagtaagaagaatgtagaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatca |
23402156 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23402157 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
23402256 |
T |
|
| Q |
201 |
gactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagat |
293 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||| ||||| |||||||||||||| |
|
|
| T |
23402257 |
gactgcagtcaggcttgttcttcctggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttactagttcttagat |
23402349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 26832718 - 26833010
Alignment:
| Q |
1 |
agaagcaagaagaatgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataa |
100 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
26832718 |
agaagcaagaagagcgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatca |
26832817 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832818 |
tgaacagtttcatcaatgatatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
26832917 |
T |
|
| Q |
201 |
gactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagat |
293 |
Q |
| |
|
||| || ||||| |||||||| || ||||||||||||||||||||||||||||| || || || ||||| |||||||| |||||||||||||| |
|
|
| T |
26832918 |
gaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagat |
26833010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 26434007 - 26434299
Alignment:
| Q |
1 |
agaagcaagaagaatgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataa |
100 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || | |
|
|
| T |
26434007 |
agaagcaagaagagcgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcatccagacattggtatctcaagcaaagccatgggtatca |
26434106 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26434107 |
tgaacagtttcatcaatgatatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
26434206 |
T |
|
| Q |
201 |
gactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagat |
293 |
Q |
| |
|
||| || ||||| |||||||| || ||||||||||||||||||||||||||||| || || || ||||| |||||||| |||||||||||||| |
|
|
| T |
26434207 |
gaccgcggtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttagat |
26434299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 26435787 - 26436079
Alignment:
| Q |
1 |
agaagcaagaagaatgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataa |
100 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
26435787 |
agaagcaagaagagcgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatca |
26435886 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26435887 |
tgaacagtttcatcaatgatatcttcgagaaactcactcaagaatcttccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
26435986 |
T |
|
| Q |
201 |
gactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagat |
293 |
Q |
| |
|
||| || ||||| |||||||| || ||||||||||||||||||| ||||||||| || || || ||||| |||||||| || ||||||||||| |
|
|
| T |
26435987 |
gaccgcggtcaggcttgttctgcccggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttaccagttcttagat |
26436079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 34662336 - 34662044
Alignment:
| Q |
1 |
agaagcaagaagaatgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataa |
100 |
Q |
| |
|
|||| |||||||| || ||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || | |
|
|
| T |
34662336 |
agaaacaagaagagcgttgaaacctacaagatctacatcttcaaggttctgaaacaagttcaccctgacattggtatctcaagcaaagccatgggtatta |
34662237 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | || ||||||||||| || || ||||| ||||||||||| |
|
|
| T |
34662236 |
tgaacagtttcatcaatgatatcttcgagaagctcgctcaagaatcttccagacttgcaaggtataacaagaagccgacgataacttcgagggaaattca |
34662137 |
T |
|
| Q |
201 |
gactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagat |
293 |
Q |
| |
|
|||||| || || |||||||||||||| |||||||| ||||||||||| ||||| || || |||||||| || ||||| || ||||||||||| |
|
|
| T |
34662136 |
gactgctgttaggcttgttcttcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttacaagttcttagat |
34662044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 23451920 - 23451788
Alignment:
| Q |
108 |
tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca |
207 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
23451920 |
tttcatcaacgatatctttgagaagctcgctcaagaatactccagacttgctcgctacaacaagaagccaacaatcacttcaagggaaattcagaccgca |
23451821 |
T |
|
| Q |
208 |
gtcagacttgttcttcctggtgaattggccaag |
240 |
Q |
| |
|
||||| |||||||| || ||||||||||||||| |
|
|
| T |
23451820 |
gtcaggcttgttctgcccggtgaattggccaag |
23451788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 41670383 - 41670671
Alignment:
| Q |
1 |
agaagcaagaagaatgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataa |
100 |
Q |
| |
|
|||| |||||||| || ||||| |||||||||||||| ||||| ||||| || || ||||| || |||||||||||||||||||| || ||||| || | |
|
|
| T |
41670383 |
agaaacaagaagagcgttgaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggtatctcaagcaaggctatggggatca |
41670482 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| ||||| ||||| ||||||||||| | |||||||||||||| ||||||||||| |||| || || |
|
|
| T |
41670483 |
tgaacagcttcatcaatgatatctttgagaagctcgctcaggaatcttccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagataca |
41670582 |
T |
|
| Q |
201 |
gactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttctt |
289 |
Q |
| |
|
|||||| || | |||||||| || |||||| | || ||||||||||| ||||| ||||| || ||||| || || |||||||| |||| |
|
|
| T |
41670583 |
gactgctgttcgtcttgttctccccggtgaacttgctaagcatgctgtctctgagggaaccaaggctgttaccaaattcactagctctt |
41670671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 40795752 - 40796026
Alignment:
| Q |
1 |
agaagcaagaagaatgtagaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataa |
100 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||||||| ||||| ||||| || || ||||| || |||||||| ||||| ||||| || ||||| || | |
|
|
| T |
40795752 |
agaaacaagaagagcgtagaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggaatctccagcaaggctatggggatca |
40795851 |
T |
|
| Q |
101 |
tgaacagtttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattca |
200 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||| || || ||||| || | || ||||| |
|
|
| T |
40795852 |
tgaacagtttcatcaatgacatctttgagaagctcgctcaggaatcatccagactcgctcgctacaacaagaaacctaccatcacctctcgtgagattca |
40795951 |
T |
|
| Q |
201 |
gactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaa |
275 |
Q |
| |
|
|||||| || | || |||||||| || ||| | |||||||| ||||| || || ||||| ||||| || ||||| |
|
|
| T |
40795952 |
gactgctgttcgtctcgttcttcccggcgaacttgccaagcacgctgtctccgagggaaccaaagcagtcactaa |
40796026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 167 - 290
Target Start/End: Original strand, 33216594 - 33216717
Alignment:
| Q |
167 |
acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagc |
266 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || || || || |
|
|
| T |
33216594 |
acaagaagccaacaatcacttcaaggaaaattcaaactgctgtcagacttgttcttcttggtgaattggccaaacatgctgtttctgagggtaccaaggc |
33216693 |
T |
|
| Q |
267 |
tgtgactaagttcactagttctta |
290 |
Q |
| |
|
|||||| ||||| ||| ||||||| |
|
|
| T |
33216694 |
tgtgaccaagtttactggttctta |
33216717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 29391467 - 29391717
Alignment:
| Q |
19 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
118 |
Q |
| |
|
||||| || ||||| ||||| ||||| ||||| ||||| ||||| || || || ||||| || |||||| ||||| || ||||||||||||||||||| |
|
|
| T |
29391467 |
gaaacctataagatttacatcttcaaggttctcaaacaggttcatcctgatataggtatttcttccaaagctatggggattatgaacagtttcatcaatg |
29391566 |
T |
|
| Q |
119 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
218 |
Q |
| |
|
||||||| ||||| || ||||| ||| | || ||| | ||||||||||||||||| || || || || || ||||| ||||| || || || | | || |
|
|
| T |
29391567 |
atatctttgagaaactcgctcaggaagcttctagattggctcgttacaacaagaaaccgacgattacgtcgagggagattcaaacggctgtgcgtttggt |
29391666 |
T |
|
| Q |
219 |
tcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgt |
269 |
Q |
| |
|
|||||| ||||||||||| || ||||||||||| |||||||| || ||||| |
|
|
| T |
29391667 |
tcttcccggtgaattggcgaaacatgctgtttccgaaggaaccaaggctgt |
29391717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 33216558 - 33216594
Alignment:
| Q |
111 |
catcaatgatatcttcgagaagcttgctcaagaatca |
147 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33216558 |
catcaatgatatcttcgtgaagcttgctcaagaatca |
33216594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 293
Target Start/End: Original strand, 45576399 - 45576478
Alignment:
| Q |
214 |
cttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttagat |
293 |
Q |
| |
|
|||||||| || | ||||||||| ||||||| ||||||||| || || ||||||||||| || ||||| || |||||||| |
|
|
| T |
45576399 |
cttgttctgcccgatgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttagat |
45576478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 167 - 290
Target Start/End: Original strand, 47317431 - 47317554
Alignment:
| Q |
167 |
acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggaacaaaagc |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| |||| ||||||||| || || ||||| |
|
|
| T |
47317431 |
acaagaagccaacaatcacttcaagggaaattcaaactgttgtcagacttattcttcctggtgaattggccaaacatgttgtttctgagggtaccaaagc |
47317530 |
T |
|
| Q |
267 |
tgtgactaagttcactagttctta |
290 |
Q |
| |
|
|||||| ||||| ||||||||||| |
|
|
| T |
47317531 |
tgtgaccaagtttactagttctta |
47317554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 40180547 - 40180309
Alignment:
| Q |
19 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
118 |
Q |
| |
|
||||| |||||||| ||||| ||||| ||||||||||| ||||| || || || ||| | |||||||| || |||||||| |||||||||||||| || | |
|
|
| T |
40180547 |
gaaacctacaagatatacatcttcaaggttctgaaacaggttcatcctgatatcggtgtttcaagcaaggctatgggaatcatgaacagtttcattaacg |
40180448 |
T |
|
| Q |
119 |
atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt |
218 |
Q |
| |
|
||||||| ||||| || ||||| ||||| || | | ||| | || ||||||||||| || || ||||| ||||| ||||| ||||| || ||| | || |
|
|
| T |
40180447 |
atatctttgagaaactcgctcaggaatcgtctcgtttggctaggtataacaagaagccgacgattacttctagggagattcaaactgctgttagattggt |
40180348 |
T |
|
| Q |
219 |
tcttcctggtgaattggccaagcatgctgtttctgaagg |
257 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||||||| |
|
|
| T |
40180347 |
tcttcctggagaattggctaaacatgctgtttctgaagg |
40180309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 47317395 - 47317431
Alignment:
| Q |
111 |
catcaatgatatcttcgagaagcttgctcaagaatca |
147 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47317395 |
catcaatgatatcttcgtgaagcttgctcaagaatca |
47317431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 29684701 - 29684826
Alignment:
| Q |
19 |
gaaacatacaagatctacatattcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg |
118 |
Q |
| |
|
||||| |||||||| || |||||||| ||||| ||||||||||| || | ||||||| | ||||| ||||| |||||| | || ||||||||| | || | |
|
|
| T |
29684701 |
gaaacctacaagatatatatattcaaggttctcaaacaagttcatcctgccattggtgtttcaagtaaagctatgggagttattaacagtttcgtgaacg |
29684800 |
T |
|
| Q |
119 |
atatcttcgagaagcttgctcaagaa |
144 |
Q |
| |
|
||||||| |||| || ||||||||| |
|
|
| T |
29684801 |
atatctttaagaaactcgctcaagaa |
29684826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 14715433 - 14715485
Alignment:
| Q |
202 |
actgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctga |
254 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
14715433 |
actgcagtgagacttgttcttcctggagaattggccaagcatgttgtgtctga |
14715485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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