View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6612_high_6 (Length: 302)
Name: NF6612_high_6
Description: NF6612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6612_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 49521027 - 49520741
Alignment:
| Q |
1 |
aattctcttgaagaaactgccttcttatccttctataacttggtatgttggtgatgagatattcctttgaaatgtttcataatcatattttgctttcctc |
100 |
Q |
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| T |
49521027 |
aattctcttgaagaaactgctttcttatccttctataacttggtatgttggtgatgagatattcctttgaaatgtttcataatcatattttgctttcctc |
49520928 |
T |
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| Q |
101 |
ttttccacctt-ctaactctgggtttacttcattttattatctcaggtatatgttgagatgcatcaccaagtaatgcagacaataatagctatggtattc |
199 |
Q |
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| T |
49520927 |
ttttccacctttctaactctgggtttacttcattttattatctcaggtatatgttgagatgcatcaccaagtaatgcagacaataatagctatggtattc |
49520828 |
T |
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| Q |
200 |
tctattttccattctacgttatatataatcagtttatttctcagttcattataatttatgatggaaacttacttcgaataacaaacc |
286 |
Q |
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| T |
49520827 |
tctattttccattctacgttatatataatcagtttatttctcagttcattataatttatgatggaaacttatttcgaataacaaacc |
49520741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 251
Target Start/End: Complemental strand, 49701700 - 49701562
Alignment:
| Q |
115 |
actctgggtttacttcattttatt-atctcaggtatatgttgagatgcatcaccaagtaatgcagacaataatagctatggtattctctattttcca-tt |
212 |
Q |
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|||||||| |||||||| |||||| |||||||||||||| |||||||||| ||||||||| | ||||| |||| |||||||| ||| ||||||| || |
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| T |
49701700 |
actctgggattacttcactttatttatctcaggtatatgatgagatgcatagacaagtaatggatgcaatattagcaatggtattttctgttttccattt |
49701601 |
T |
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| Q |
213 |
ctacgttatatataatcagtttatttctcagttcattat |
251 |
Q |
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| T |
49701600 |
ttatgttatttataaacaatttatttctcagttcattat |
49701562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 255
Target Start/End: Complemental strand, 49531887 - 49531743
Alignment:
| Q |
113 |
taactctgggtttacttcattttatt-atctcaggtatatgttgagatgcatcaccaagtaatgcagacaataatagctatggtattctctattttccat |
211 |
Q |
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||||| ||| |||||||| |||||| | ||||||||||||||||||||||| |||| ||| | ||||| |||||||||||||| | ||| |||| |
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| T |
49531887 |
taactttggttttacttcgatttatttaactcaggtatatgttgagatgcatagagaagtgatggatgcaatattagctatggtattccatgtttcccat |
49531788 |
T |
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| Q |
212 |
t-ctacgttatatataatcagtttatttctcagttcattataatt |
255 |
Q |
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| ||| ||||| |||||||| |||||||||||||||||||||||| |
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| T |
49531787 |
ttctatgttatttataatcaatttatttctcagttcattataatt |
49531743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 49485318 - 49485277
Alignment:
| Q |
3 |
ttctcttgaagaaactgccttcttatccttctataacttggt |
44 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
49485318 |
ttctcttgaagaaactggcttcttatccttctatcacttggt |
49485277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 49701828 - 49701787
Alignment:
| Q |
3 |
ttctcttgaagaaactgccttcttatccttctataacttggt |
44 |
Q |
| |
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||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
49701828 |
ttctcttgaagaaactggcttcttatccttctattacttggt |
49701787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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