View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6612_low_1 (Length: 956)
Name: NF6612_low_1
Description: NF6612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6612_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 486 - 765
Target Start/End: Original strand, 7412817 - 7413096
Alignment:
| Q |
486 |
cctagttatatttgaaaatttatcaaactataaatcataagggagccaaatgcattaacaagccaatacaacatctcaaccaatcatagtagagtccacg |
585 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7412817 |
cctagttatatttgaaaatttatcaaactataaatcataagggagccaaatgcattaacaagccaatacaacatctcaaccaatcatagtagagtccacg |
7412916 |
T |
|
| Q |
586 |
agtatggaagccaaaatgtccaatataccaccgtcaaaccaacattatgatatacttcattcttccctttatataaactcacctgcaaacttttgcttgc |
685 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7412917 |
agtatggaagccaaaatgtccaatataccaccgtcaaaccaacattatgatatacttcattcttccctttatataaactcacctgcaaacttttgcttgc |
7413016 |
T |
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| Q |
686 |
atatattgagagagaaannnnnnncactgtaattaatgtattannnnnnngacaaaacactgtaattaatgtatgtattt |
765 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7413017 |
atatattgagagagaaatttttttcactgtaattaatgtattatttttttgacaaaacactgtaattaatgtatgtattt |
7413096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 486 - 765
Target Start/End: Original strand, 7458897 - 7459176
Alignment:
| Q |
486 |
cctagttatatttgaaaatttatcaaactataaatcataagggagccaaatgcattaacaagccaatacaacatctcaaccaatcatagtagagtccacg |
585 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7458897 |
cctagttatatttgaaaatttatcaaactataaatcataagggagccaaatgcattaacaagccaatacaacatctcaaccaatcatagtagagtccacg |
7458996 |
T |
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| Q |
586 |
agtatggaagccaaaatgtccaatataccaccgtcaaaccaacattatgatatacttcattcttccctttatataaactcacctgcaaacttttgcttgc |
685 |
Q |
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| T |
7458997 |
agtatggaagccaaaatgtccaatataccaccgtcaaaccaacattatgatatacttcattcttccctttatataaactcacctgcaaacttttgcttgc |
7459096 |
T |
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| Q |
686 |
atatattgagagagaaannnnnnncactgtaattaatgtattannnnnnngacaaaacactgtaattaatgtatgtattt |
765 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7459097 |
atatattgagagagaaatttttttcactgtaattaatgtattatttttttgacaaaacactgtaattaatgtatgtattt |
7459176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 757 - 934
Target Start/End: Original strand, 7413234 - 7413408
Alignment:
| Q |
757 |
tatgtattttacataaggctatgactaaattgtcattgtattatatcaaaatcgtcaactgtactgtacttgttatttattttcaaaattccaagacaaa |
856 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7413234 |
tatgtattttacatagggctatgactaaattgtcattgtattatatcaaaatcgtcaactgt---gtacttgttatttattttcaaaattccaagacaaa |
7413330 |
T |
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| Q |
857 |
ttaagactattaattagagatttattgggaaaacatataaaatacatttagtaattttagataatgcttataattatg |
934 |
Q |
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| T |
7413331 |
ttaagactatcaattagagatttattgggaaaacatataaaatacatttagtaattttagataatgcttataattatg |
7413408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 757 - 934
Target Start/End: Original strand, 7459315 - 7459489
Alignment:
| Q |
757 |
tatgtattttacataaggctatgactaaattgtcattgtattatatcaaaatcgtcaactgtactgtacttgttatttattttcaaaattccaagacaaa |
856 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7459315 |
tatgtattttacatagggctatgactaaattgtcattgtattatatcaaaatcgtcaactgt---gtacttgttatttattttcaaaattccaagacaaa |
7459411 |
T |
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| Q |
857 |
ttaagactattaattagagatttattgggaaaacatataaaatacatttagtaattttagataatgcttataattatg |
934 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7459412 |
ttaagactatcaattagagatttattgggaaaacatataaaatacatttagtaattttagataatgcttataattatg |
7459489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 201 - 335
Target Start/End: Original strand, 7412499 - 7412633
Alignment:
| Q |
201 |
attttctatcggtgttgttggcaaaatatttttatagttgtaatgattagtcagcaaaggttttaattttcaaaactatgcaaatatttagctagatttg |
300 |
Q |
| |
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||||||||| |||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7412499 |
attttctattggtgttgttggcaaaacatttttatagttgtaataatcagtcaacaaaggttttaattttcaaaactatgcaaatatttagctagatttt |
7412598 |
T |
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| Q |
301 |
tagagagtaatatatgttagattctcctatgaaag |
335 |
Q |
| |
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|| |||||||||||||||||||||||||||||||| |
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| T |
7412599 |
tatagagtaatatatgttagattctcctatgaaag |
7412633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 201 - 335
Target Start/End: Original strand, 7458576 - 7458710
Alignment:
| Q |
201 |
attttctatcggtgttgttggcaaaatatttttatagttgtaatgattagtcagcaaaggttttaattttcaaaactatgcaaatatttagctagatttg |
300 |
Q |
| |
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||||||||| |||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7458576 |
attttctattggtgttgttggcaaaacatttttatagttgtaataatcagtcaacaaaggttttaattttcaaaactatgcaaatatttagctagatttt |
7458675 |
T |
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| Q |
301 |
tagagagtaatatatgttagattctcctatgaaag |
335 |
Q |
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|| |||||||||||||||||||||||||||||||| |
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| T |
7458676 |
tatagagtaatatatgttagattctcctatgaaag |
7458710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 7458376 - 7458512
Alignment:
| Q |
1 |
gtgtatagtggtattgtgatgggatgttgatgatgttctctgttgcatgaacnnnnnnnatgtggatgtttttatgttttcaatttagctcaaaatattg |
100 |
Q |
| |
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||||||||| | | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
7458376 |
gtgtatagttgcactgtgatgggatgttgatgatgttctctgttgcatgaactttttttatgtggatgtttttatgttttcaatttaactcaaaatattg |
7458475 |
T |
|
| Q |
101 |
tcgttcaatgacttttgtttattgatgtgggcgctac |
137 |
Q |
| |
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||||||||||| ||||||||||||||||||| ||||| |
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| T |
7458476 |
tcgttcaatgagttttgtttattgatgtgggtgctac |
7458512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 344 - 457
Target Start/End: Original strand, 7412680 - 7412790
Alignment:
| Q |
344 |
catcacgaaatgtttaatacacaaacaagaatttgttttaaaattttttaagaacagtttgggatactactatttgaattagagatcaatgtatagaatc |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7412680 |
catcacgaaatgtttaatacacaaacaagaatttgttttaaaaaaatttaagaaaagtttggga---tactatttgaattagagatcaatgtatagaatc |
7412776 |
T |
|
| Q |
444 |
acaaaaccaagaaa |
457 |
Q |
| |
|
|||||||||||||| |
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|
| T |
7412777 |
acaaaaccaagaaa |
7412790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 344 - 457
Target Start/End: Original strand, 7458757 - 7458867
Alignment:
| Q |
344 |
catcacgaaatgtttaatacacaaacaagaatttgttttaaaattttttaagaacagtttgggatactactatttgaattagagatcaatgtatagaatc |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7458757 |
catcacgaaatgtttaatacacaaacaagaatttgttttaaaaaaatttaagaaaagtttggga---tactatttgaattagagatcaatgtatagaatc |
7458853 |
T |
|
| Q |
444 |
acaaaaccaagaaa |
457 |
Q |
| |
|
|||||||||||||| |
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|
| T |
7458854 |
acaaaaccaagaaa |
7458867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 7412297 - 7412435
Alignment:
| Q |
1 |
gtgtatagtggtattgtgatgggatgtt-gatgatgttctctgttgcatgaacnnnnnnn-atgtggatgtttttatgttttcaatttagctcaaaatat |
98 |
Q |
| |
|
||||||||| | | |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
7412297 |
gtgtatagttgcactgtgatgggatgtttgatgatgttctctgttgcatgaacttttttttatgtggatgtttttatgttttcaatttaactcaaaatat |
7412396 |
T |
|
| Q |
99 |
tgtcgttcaatgacttttgtttattgatgtgggcgctac |
137 |
Q |
| |
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||||||||||||| ||||||||||||||||||| ||||| |
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| T |
7412397 |
tgtcgttcaatgagttttgtttattgatgtgggtgctac |
7412435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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