View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6612_low_14 (Length: 252)

Name: NF6612_low_14
Description: NF6612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6612_low_14
NF6612_low_14
[»] chr8 (3 HSPs)
chr8 (18-244)||(43821505-43821731)
chr8 (18-233)||(43814207-43814425)
chr8 (18-244)||(43828971-43829200)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 43821505 - 43821731
Alignment:
Q  18 aacatgagcaggccaagacatttgtttcacaaacatgttttcattggcaataggaggcacatcatggttattactattatcatctgtagttttttcatcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43821505 aacatgagcaggccaagacatttgtttcacaaacatgttttcattggcaataggaggcacatcatggttattactattatcatctgtagttttttcatcc 43821604  T
Q  118 caattattttgaacttcaattgatctaagatcaagtactgcttcacttagagacttgtactctagaaattttctatcttcatccatgtgaaataggcctt 217  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43821605 caattgttttgaacttcaattgatctaagatcaagtactgcttcacttagagacttgtactctagaaattttctatcttcatccatgtgaaataggcctt 43821704  T
Q  218 taggatgatcatcattactttcatctc 244  Q
    |||||||||||||||||||||||||||    
T  43821705 taggatgatcatcattactttcatctc 43821731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 43814207 - 43814425
Alignment:
Q  18 aacatgagcaggccaagacatttgtttcacaaacatgttttcattggcaatag---gaggcacatcatggttattactattatcatctgtagttttttca 114  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||| ||||   ||||||||||||||||||||| ||||| ||||||||||||||||    
T  43814207 aacatgagctggccaagacatttgtttcacagacatgttttcattggcgatagaaggaggcacatcatggttattaccattattatctgtagttttttca 43814306  T
Q  115 tcccaattattttgaacttcaattgatctaagatcaagtactgcttcacttagagacttgtactctagaaattttctatcttcatccatgtgaaataggc 214  Q
    |||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||    
T  43814307 tcccaattgttttgaacttcaattgatctgagatcaagtacagcttcacttagcgacttgtactctagaaatttgctatcttcatccatgtgaaagaggc 43814406  T
Q  215 ctttaggatgatcatcatt 233  Q
    |||| ||||||||||||||    
T  43814407 cttttggatgatcatcatt 43814425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 43828971 - 43829200
Alignment:
Q  18 aacatgagcaggccaagacatttgtttcacaaacatgttttcattggcaatag---gaggcacatcatggttattactattatcatctgtagttttttca 114  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||| ||||   ||||||||||||||||||||||||||| |||| ||||| |||||    
T  43828971 aacatgagcaggccaagatgtttgtttcacgaacatgttttcattggcgatagaaggaggcacatcatggttattactattattatctctagttatttca 43829070  T
Q  115 tcccaattattttgaacttcaattgatctaagatcaagtactgcttcacttagagacttgtactctagaaattttctatcttcatccatgtgaaataggc 214  Q
    |||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| | | ||||||||||||| ||   |||    
T  43829071 tcccaattgttttgaacttcaattgatctgagatcaagtgctgcttcacttagagacttgtactctagaaattgtttgtcttcatccatgttaatgtggc 43829170  T
Q  215 ctttaggatgatcatcattactttcatctc 244  Q
    ||| |||| ||||||||||| |||| ||||    
T  43829171 cttcaggaagatcatcattagtttcctctc 43829200  T

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