View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6612_low_2 (Length: 839)
Name: NF6612_low_2
Description: NF6612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6612_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 675; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 24 - 820
Target Start/End: Complemental strand, 38663818 - 38663021
Alignment:
| Q |
24 |
ttaggtgttgttgttgatgatgaggaagaaagaagagggaagatgataaaaagtgaaacaaattaggtgttggtagatcagtgttacatgcaatgaactt |
123 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| | ||||||||||||| ||| | |
|
|
| T |
38663818 |
ttaggtgctgttgttgatgatgaggaagaaagaagagggaagatgatgaaaagtgaaacaaattaggtgttggtggataactgttacatgcaataaacgt |
38663719 |
T |
|
| Q |
124 |
acaatataatgactgaaatcacatctgaaatattagactttggaaaaattaacggattgtatcaatttgactgacaaaacatatttaagggaccgaatgg |
223 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||| || |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38663718 |
acaatataataactgaaatcacatctgaaatactagacattagaaaaattaacggactctatcaatttgactgacaaaacatatttaagggaccgaatgg |
38663619 |
T |
|
| Q |
224 |
aaannnnnnnnnngagttaggggaccaaataaaaaacaacaaattatttatgtaattaagccataatttaaaattgggcccaccatattttattatatat |
323 |
Q |
| |
|
||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38663618 |
aaaaaaaaatta-gagttaggggaacaaataaaaa-caacaaattatttatgtaattaagccataatttaaaattgggcccaccatattttattatatat |
38663521 |
T |
|
| Q |
324 |
tcaagcagtgtgggtaacaagaactgtgacataaccgaaccgtccccagtctctcgcgaccaaccacaaactcccgactctaccaccactctagccaccc |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38663520 |
tcaagcagtgtgggtaacaagaactgtgacataaccgaaccgtccccagtctctcgcgaccaaccacaaactcccgactctaccaccactctagccaccc |
38663421 |
T |
|
| Q |
424 |
aactctcactctatctcactacgattttgatgagtgaacactctttgttgaataatcccccattcaagaattttttggacctgtgacaattctaccaatt |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38663420 |
aactctcactctatctcactacgattttgatgagtgaacactctttgttgaataatcccccattcaagaattttttggacctgtgacaattctaccaact |
38663321 |
T |
|
| Q |
524 |
gtctctgtcgccagagaccccttgccttccaagaatcgcagccgtgcttcggattgggagttcttgaacccaccgggtgtaggagattatggagattatg |
623 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38663320 |
gtctctgtcgccagagaccccttgccttccaagaatcgcagccgtgcttcggattgggagttcttgaacccaccgggtgtaggagattatggagattatg |
38663221 |
T |
|
| Q |
624 |
tggattggcgttccactgtaaatgcttcaagagagtcgattacttttgctt---aagttgctggagaaggtctcaccgccggagaagggggtgtgtatcg |
720 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38663220 |
tggattggcgttccactgtaaatgcttcaagagagtcgattacttttgcttaagaagttgctggagaaggtctcaccgccggagaaggtggtgtgtatcg |
38663121 |
T |
|
| Q |
721 |
gagtttcaagaacaacgatgcttccaacaagttcaatactttcgccggaaattctggttgcggttgtgtttgttgtggaaaagagttcaaatcagcaatt |
820 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38663120 |
gagtttcaagaacaacgatgcttccaacaagttcaatactttcgccggaaattctggttgcggttgcgtttgttgtggaaaagagttcaaatcagcaatt |
38663021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 45395887 - 45395935
Alignment:
| Q |
43 |
atgaggaagaaagaagagggaagatgataaaaagtgaaacaaattaggtg |
92 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
45395887 |
atgaggaagaa-gaagagggaagatgatgaaaagtgaaaaaaattaggtg |
45395935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 29861663 - 29861572
Alignment:
| Q |
125 |
caatataatgactgaaatcacatctgaaatattagactttggaaaaattaacggattgtatcaatttgactgacaaaacatatttaagggacc |
217 |
Q |
| |
|
|||| ||||| |||||||| ||||| ||||||||||| | ||||| ||||||| || ||||||||||||||| ||||||||||||||||| |
|
|
| T |
29861663 |
caatctaatggctgaaatcgcatctaaaatattagacataa-aaaaactaacggaatggatcaatttgactgacggaacatatttaagggacc |
29861572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 161
Target Start/End: Complemental strand, 35563182 - 35563104
Alignment:
| Q |
83 |
aaattaggtgttggtagatcagtgttacatgcaatgaacttacaatataatgactgaaatcacatctgaaatattagac |
161 |
Q |
| |
|
||||||| | ||||||||||| ||||||| | ||| || | |||| ||||| |||||||||||||| ||||||||||| |
|
|
| T |
35563182 |
aaattagatattggtagatcaccgttacatacgatggacctgcaatctaatggctgaaatcacatctaaaatattagac |
35563104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University