View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6612_low_3 (Length: 754)
Name: NF6612_low_3
Description: NF6612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6612_low_3 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 2 - 735
Target Start/End: Complemental strand, 44709785 - 44709044
Alignment:
| Q |
2 |
ggaattggaagcgctaaactggtagagatttgatgatcgctaacaacttagagtacttatgttgatatttaccatgacaaagctatgtactatgaccgtt |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44709785 |
ggaattggaagcgctaaactggtagagatttgatgatcgctaacaacttagagtacttatgttgatatttaccatgacaaagctatgtactatgaccgtt |
44709686 |
T |
|
| Q |
102 |
tgggaaaagttataatgagtattgtaattggtagtgttggcacaattgtgctatctccatacaccttttattagtaatgttaatttttcattaaatagcc |
201 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44709685 |
tgggaaaagttgtaatgagtattgtaattggtagtgttggcataattgtgctatctccatacatcttttattagtaatgttaatttttcattaaatagcc |
44709586 |
T |
|
| Q |
202 |
aagtttgaatgcaaacttgattannnnnnnacaatcaaacaaatgcaaacttacaaggatgagttaaacagaaggcttcaaaaacaataggtggcgcaaa |
301 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44709585 |
aagtttgaatgcaaacttgattatttttttacaatcaaacaaatgcaaacttacaaggatgagttaaacagaaggcttcaaaagcaataggtggcgcaaa |
44709486 |
T |
|
| Q |
302 |
tatcatggggataacttctttgtnnnnnnnnnnnnn--ttctctaaactcaatgtaagaattttaggatt-gatattcttgcatccaacatccactcta- |
397 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44709485 |
tatcatggggataacttctttgtaaaaataaaaaaaaattctctaaactcagtgtaagaattttaggatttgatattcttgcatccaacatccactctag |
44709386 |
T |
|
| Q |
398 |
---ccaagatatctctaaaatcagatcatttactttgtctcggtatatgttttagcacgtagaaaggtaaatgattatcaaagctattaacatattgata |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44709385 |
ctaccaagatatctctaaaatcagatcatttactttgtctcggtatatgttttagcacgtagaaaggtaaatgattatcaaagctattaacatattgata |
44709286 |
T |
|
| Q |
495 |
ataccaattgggcaccgtgtataattaatgttgtattatttgtatgtatgcacgc-attttattgtacgcgtgaggatgctggtcatacatggtggcgaa |
593 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44709285 |
ataccaattgggcaccgtgtataattagtattgttttatttgtatgtatgcacgccattttattgtacgcgtgaggatgctggtcatacatggtggcgaa |
44709186 |
T |
|
| Q |
594 |
gctgttttgtgttttcttatagatgaaatatgcgtggaaggacggtataaattaggagcgattgtagttatataaagctgatgaaaactgatacgatata |
693 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
44709185 |
gctgttttgtgttttcttatagatgaaatatgcgtggaaggacggtataaattaggagagattgtagttatataaagctgctgaaaactgatacaatata |
44709086 |
T |
|
| Q |
694 |
ggccaaaatatatgtatattggtacgttcaacgtgaattggc |
735 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44709085 |
ggccaaaatatatgtatattggtacgttcaacgtgaattggc |
44709044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 21 - 281
Target Start/End: Original strand, 24457316 - 24457578
Alignment:
| Q |
21 |
tggtagagatttgatgatcgctaa--caacttagagtacttatgttgatatttaccatgacaaagctatgtactatgaccgtttgggaaaagttataatg |
118 |
Q |
| |
|
||||| |||||||||||||| ||| |||||||| | |||||||||||||||||| ||||||||| | |||| | |||| |||| ||| |||| ||||| |
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| T |
24457316 |
tggtaaagatttgatgatcgttaaaacaacttaggggacttatgttgatatttactatgacaaagatttgtagtgtgacaatttgtgaatagttgtaatg |
24457415 |
T |
|
| Q |
119 |
agtattgtaattggtagtgttggcacaattgtgctatctccatacaccttttattagtaatgttaatttttcattaaatagccaagtttgaatgcaaact |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24457416 |
agtattgtaattggtagtgttggcacaattgtgatgtctccatacttctttcattagtaatgttaatttttcattaaatagccaagtttgaatgcaaact |
24457515 |
T |
|
| Q |
219 |
tgattannnnnnnacaatcaaacaaatgcaaacttacaaggatgagttaaacagaaggcttca |
281 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||| |||||||| |||||| |
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|
| T |
24457516 |
tgattatttttttacaattaaacaaatgcaaacttacaaggatgaggcaaacagaaagcttca |
24457578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 21 - 281
Target Start/End: Complemental strand, 1613911 - 1613649
Alignment:
| Q |
21 |
tggtagagatttgatgatcgctaa--caacttagagtacttatgttgatatttaccatgacaaagctatgtactatgaccgtttgggaaaagttataatg |
118 |
Q |
| |
|
|||||||||||||||||||| ||| || ||||| | |||||||||||||||||| ||||||||| | |||| |||| | |||| |||||||||||||| |
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|
| T |
1613911 |
tggtagagatttgatgatcgttaaaacagcttaggggacttatgttgatatttactatgacaaaggtttgtagtatggcaatttgtgaaaagttataatg |
1613812 |
T |
|
| Q |
119 |
agtattgtaattggtagtgttggcacaattgtgctatctccatacaccttttattagtaatgttaatttttcattaaatagccaagtttgaatgcaaact |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
1613811 |
agtattgtaattggtagtgttggcacaattatgctgtctccatacttctttcattagtaatgttaatttttcattaaatagccagatttgaatgcaaact |
1613712 |
T |
|
| Q |
219 |
tgattannnnnnnacaatcaaacaaatgcaaacttacaaggatgagttaaacagaaggcttca |
281 |
Q |
| |
|
|||||| ||||||||||||| |||||| |||||||||||| |||||| || |||||| |
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|
| T |
1613711 |
tgattatttttttacaatcaaacaaacgcaaacgtacaaggatgaggtaaacataaagcttca |
1613649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 368 - 414
Target Start/End: Original strand, 24457612 - 24457658
Alignment:
| Q |
368 |
ttgatattcttgcatccaacatccactctaccaagatatctctaaaa |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
24457612 |
ttgatattcttgcatccaacatccactctaccaagatagctctaaaa |
24457658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 5e-61; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 21 - 281
Target Start/End: Complemental strand, 24786077 - 24785814
Alignment:
| Q |
21 |
tggtagagatttgatgatcgctaa--caactt-agagtacttatgttgatatttaccatgacaaagctatgtactatgaccgtttgggaaaagttataat |
117 |
Q |
| |
|
|||||||||||||||||||| ||| || ||| || | |||||||||||||||||| ||||||||| | |||| ||| || |||| |||||||| |||| |
|
|
| T |
24786077 |
tggtagagatttgatgatcgttaaaacagctttaggggacttatgttgatatttactatgacaaagatttgtagtataacaatttgtgaaaagttgtaat |
24785978 |
T |
|
| Q |
118 |
gagtattgtaattggtagtgttggcacaattgtgctatctccatacaccttttattagtaatgttaatttttcattaaatagccaagtttgaatgcaaac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||| |||| ||||||| |||||||||| ||| ||||||| | |||||||||||||| |
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|
| T |
24785977 |
gagtattgtaattggtagtgttggcacaattatgccgtctccatacttctttcattagtactgttaattttccatcaaatagctaggtttgaatgcaaac |
24785878 |
T |
|
| Q |
218 |
ttgattannnnnnnacaatcaaacaaatgcaaacttacaaggatgagttaaacagaaggcttca |
281 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
24785877 |
ttgattatttttttacaatcaaacaaatgcaaacttacaaggatgaggtaaacagaaagcttca |
24785814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 21 - 291
Target Start/End: Original strand, 43229436 - 43229707
Alignment:
| Q |
21 |
tggtagagatttgatgatcgctaacaacttagagtacttatgttgatatttaccatgacaaagctatgtactatgaccgtttgggaaaagttataatgag |
120 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| | | || ||||||||||||| |||||||| | |||| |||||| |||| |||||||| ||||||| |
|
|
| T |
43229436 |
tggtagagatttgatgatcactaacggcttaggggagttgtgttgatatttactgtgacaaaggtttgtagtatgacgatttgtgaaaagttgtaatgag |
43229535 |
T |
|
| Q |
121 |
tattgtaattggtagtgttggcacaattgtgctatctccatacaccttttattagtaatgttaatttttcattaaatagccaagtttgaatgcaaactt- |
219 |
Q |
| |
|
||||||||| |||||||||||||| |||||| | |||||||||| | || ||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43229536 |
tattgtaatcggtagtgttggcactattgtgttgtctccatacatcattcattagtaatattaatttttcattaaatagccaggtttgaatgcaaactta |
43229635 |
T |
|
| Q |
220 |
gattannnnnnnacaatcaaacaaatgcaaacttacaaggatgagttaaacagaaggcttcaaaaacaatag |
291 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||| | ||||||||| || |||||| |
|
|
| T |
43229636 |
gattattgttttacaatcaaacaaatgcaaacttacaaggatgaggcaaatataaggcttcataagcaatag |
43229707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 550 - 625
Target Start/End: Original strand, 19970007 - 19970083
Alignment:
| Q |
550 |
attttattgtacgcgtgaggatgctggtcatacatggtggc-gaagctgttttgtgttttcttatagatgaaatatg |
625 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19970007 |
attttattgtacgcgtgaggatgttggtcatacatggtggctaaagctgttttgtgttttcttatagatgaaatatg |
19970083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 550 - 625
Target Start/End: Complemental strand, 21022802 - 21022726
Alignment:
| Q |
550 |
attttattgtacgcgtgaggatgctggtcatacatggtggc-gaagctgttttgtgttttcttatagatgaaatatg |
625 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21022802 |
attttattgtacgcgtgaggatgttggtcatacatggtggctaaagctgttttgtgttttcttatagatgaaatatg |
21022726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 43229813 - 43229868
Alignment:
| Q |
360 |
ttttaggatt-gatattcttgcatccaacatccactctaccaagatatctctaaaa |
414 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||| ||||||| ||| |||||||| |
|
|
| T |
43229813 |
ttttaggatttgatattcttgcatcaaacatccaccctaccaacatagctctaaaa |
43229868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 4e-46; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 4735623 - 4735418
Alignment:
| Q |
21 |
tggtagagatttgatgatcgctaacaa--cttagagtacttatgttgatatttaccatgacaaagctatgtactatgaccgtttgggaaaagttataatg |
118 |
Q |
| |
|
|||||||||||||||||||| ||| | ||||| | |||||||||||||||||| || |||||| | |||| |||| | |||| |||||||| ||||| |
|
|
| T |
4735623 |
tggtagagatttgatgatcgttaaaacggcttaggggacttatgttgatatttactataacaaaggtttgtagtatggcaatttgtgaaaagttgtaatg |
4735524 |
T |
|
| Q |
119 |
agtattgtaattggtagtgttggcacaattgtgctatctccatacaccttttattagtaatgttaatttttcattaaatagccaagtttgaatgcaaact |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| || ||| | |||| ||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
4735523 |
agtattgtaattggtagtgttggcacaattatgctgccttcatgcttctttcattagtaatgttaatttttcattaaatagacacgtttgaatgcaaact |
4735424 |
T |
|
| Q |
219 |
tgatta |
224 |
Q |
| |
|
|||||| |
|
|
| T |
4735423 |
tgatta |
4735418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 368 - 414
Target Start/End: Complemental strand, 4735325 - 4735279
Alignment:
| Q |
368 |
ttgatattcttgcatccaacatccactctaccaagatatctctaaaa |
414 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
4735325 |
ttgatattcttgaatccaacatccactctaccaagataactctaaaa |
4735279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 414
Target Start/End: Complemental strand, 26836855 - 26836813
Alignment:
| Q |
371 |
atattcttgcatccaacatccactctaccaagatatctctaaaa |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
26836855 |
atattcttgcatccaacatccactctaccaa-atagctctaaaa |
26836813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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