View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6612_low_6 (Length: 374)

Name: NF6612_low_6
Description: NF6612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6612_low_6
NF6612_low_6
[»] scaffold0236 (1 HSPs)
scaffold0236 (47-364)||(19956-20272)
[»] chr5 (38 HSPs)
chr5 (290-364)||(31706356-31706430)
chr5 (69-167)||(15965795-15965893)
chr5 (1-46)||(41180314-41180359)
chr5 (3-45)||(5259488-5259530)
chr5 (1-46)||(5259379-5259424)
chr5 (1-45)||(7738407-7738451)
chr5 (1-45)||(41180208-41180252)
chr5 (69-147)||(4462577-4462655)
chr5 (1-45)||(18033350-18033394)
chr5 (3-49)||(18033458-18033504)
chr5 (11-45)||(26141866-26141900)
chr5 (69-118)||(1352387-1352436)
chr5 (1-46)||(14772542-14772587)
chr5 (82-155)||(19366984-19367056)
chr5 (3-47)||(11795729-11795773)
chr5 (58-149)||(1355380-1355471)
chr5 (15-46)||(3851478-3851509)
chr5 (15-46)||(6763812-6763843)
chr5 (3-46)||(10437740-10437783)
chr5 (3-46)||(20518166-20518208)
chr5 (15-46)||(23914835-23914866)
chr5 (15-46)||(23914956-23914987)
chr5 (15-46)||(26300105-26300136)
chr5 (3-45)||(71254-71296)
chr5 (15-45)||(1996842-1996872)
chr5 (15-45)||(1996963-1996993)
chr5 (16-46)||(20019864-20019894)
chr5 (15-45)||(25772149-25772179)
chr5 (16-46)||(25772271-25772301)
chr5 (15-45)||(27314470-27314500)
chr5 (69-155)||(38370534-38370620)
chr5 (8-45)||(7306544-7306581)
chr5 (69-146)||(9515541-9515617)
chr5 (16-45)||(13311170-13311199)
chr5 (8-45)||(16441608-16441645)
chr5 (15-48)||(19531293-19531326)
chr5 (60-146)||(36302158-36302246)
chr5 (15-47)||(25408536-25408568)
[»] chr2 (40 HSPs)
chr2 (58-168)||(32838637-32838747)
chr2 (62-175)||(19002758-19002871)
chr2 (69-167)||(41252763-41252862)
chr2 (1-47)||(24457093-24457139)
chr2 (4-46)||(24457204-24457246)
chr2 (1-45)||(19950112-19950156)
chr2 (1-46)||(2060198-2060244)
chr2 (1-47)||(26234017-26234063)
chr2 (109-167)||(33847488-33847546)
chr2 (83-168)||(752182-752267)
chr2 (4-45)||(29819765-29819806)
chr2 (4-49)||(38181864-38181909)
chr2 (58-150)||(1388480-1388572)
chr2 (10-46)||(2060612-2060648)
chr2 (1-45)||(9431192-9431236)
chr2 (3-46)||(5574213-5574256)
chr2 (3-46)||(19612935-19612978)
chr2 (64-119)||(38721626-38721681)
chr2 (3-45)||(15119880-15119922)
chr2 (61-153)||(4640196-4640288)
chr2 (1-45)||(19950218-19950262)
chr2 (3-47)||(38465782-38465826)
chr2 (10-46)||(38594338-38594374)
chr2 (10-46)||(38597934-38597970)
chr2 (15-47)||(38598055-38598087)
chr2 (3-42)||(3121525-3121564)
chr2 (15-46)||(38594459-38594490)
chr2 (16-46)||(1980979-1981009)
chr2 (15-45)||(3887948-3887978)
chr2 (3-45)||(21488130-21488172)
chr2 (16-46)||(37195046-37195076)
chr2 (3-40)||(3098229-3098266)
chr2 (3-40)||(25270959-25270996)
chr2 (14-51)||(26229435-26229472)
chr2 (3-48)||(26234127-26234172)
chr2 (1-46)||(32316518-32316563)
chr2 (1-45)||(8266413-8266457)
chr2 (3-39)||(8383288-8383324)
chr2 (104-136)||(11477054-11477086)
chr2 (58-110)||(40349639-40349691)
[»] chr4 (35 HSPs)
chr4 (69-167)||(41899075-41899173)
chr4 (69-163)||(5168521-5168615)
chr4 (60-153)||(8839684-8839775)
chr4 (68-174)||(38868831-38868937)
chr4 (3-45)||(56328553-56328595)
chr4 (1-46)||(49481981-49482026)
chr4 (1-46)||(21884012-21884058)
chr4 (1-46)||(56328443-56328489)
chr4 (58-114)||(3167167-3167223)
chr4 (4-40)||(4044402-4044438)
chr4 (1-45)||(16468199-16468243)
chr4 (1-45)||(21884120-21884164)
chr4 (1-45)||(51232266-51232310)
chr4 (90-168)||(42563388-42563467)
chr4 (70-140)||(3784073-3784143)
chr4 (8-50)||(6126760-6126802)
chr4 (58-128)||(6167846-6167916)
chr4 (1-46)||(24851511-24851556)
chr4 (1-45)||(23071507-23071551)
chr4 (3-46)||(14450951-14450994)
chr4 (16-47)||(28702177-28702208)
chr4 (3-46)||(54713092-54713135)
chr4 (15-50)||(55087826-55087861)
chr4 (69-127)||(6317015-6317073)
chr4 (16-46)||(28702055-28702085)
chr4 (15-45)||(52817682-52817712)
chr4 (1-42)||(20294532-20294573)
chr4 (104-173)||(24858618-24858687)
chr4 (1-45)||(2440905-2440949)
chr4 (15-47)||(5281250-5281282)
chr4 (1-45)||(14451058-14451102)
chr4 (3-46)||(21224788-21224832)
chr4 (4-40)||(47181559-47181595)
chr4 (61-137)||(53333557-53333633)
chr4 (15-47)||(54164928-54164960)
[»] chr3 (44 HSPs)
chr3 (81-167)||(1402014-1402100)
chr3 (290-364)||(4741093-4741168)
chr3 (58-168)||(45153502-45153612)
chr3 (58-163)||(31437802-31437906)
chr3 (1-45)||(25881131-25881175)
chr3 (1-45)||(25881237-25881281)
chr3 (61-168)||(44720854-44720961)
chr3 (58-168)||(23070829-23070939)
chr3 (1-45)||(8439253-8439297)
chr3 (1-46)||(38677666-38677711)
chr3 (1-45)||(8439359-8439403)
chr3 (1-48)||(8504951-8504998)
chr3 (3-46)||(9170106-9170149)
chr3 (58-153)||(23073658-23073753)
chr3 (3-45)||(8504845-8504887)
chr3 (14-47)||(50261048-50261081)
chr3 (58-114)||(4204051-4204107)
chr3 (1-45)||(12708781-12708825)
chr3 (15-47)||(17552470-17552502)
chr3 (10-46)||(51239237-51239273)
chr3 (15-46)||(51239358-51239389)
chr3 (16-47)||(51617447-51617478)
chr3 (58-181)||(52685097-52685220)
chr3 (14-48)||(5919424-5919458)
chr3 (4-46)||(12047239-12047281)
chr3 (15-45)||(21404009-21404039)
chr3 (58-168)||(23057092-23057202)
chr3 (15-45)||(29565104-29565134)
chr3 (15-45)||(36362599-36362629)
chr3 (104-174)||(40696114-40696184)
chr3 (15-45)||(41349655-41349685)
chr3 (15-45)||(41349776-41349806)
chr3 (15-45)||(52168278-52168308)
chr3 (3-45)||(52215983-52216025)
chr3 (60-118)||(54987249-54987307)
chr3 (4-45)||(19857536-19857577)
chr3 (3-40)||(21217166-21217203)
chr3 (3-40)||(24075447-24075484)
chr3 (16-45)||(40470534-40470563)
chr3 (69-126)||(48600645-48600702)
chr3 (15-48)||(51617323-51617356)
chr3 (3-47)||(12744894-12744938)
chr3 (1-41)||(26104773-26104813)
chr3 (6-45)||(54690935-54690975)
[»] chr1 (61 HSPs)
chr1 (69-167)||(25129864-25129962)
chr1 (58-174)||(1609708-1609823)
chr1 (1-47)||(28725567-28725613)
chr1 (1-50)||(6283525-6283574)
chr1 (1-46)||(36040140-36040185)
chr1 (1-46)||(36040247-36040292)
chr1 (58-174)||(36995238-36995355)
chr1 (1-46)||(24115745-24115790)
chr1 (1-45)||(6283636-6283680)
chr1 (1-45)||(28725461-28725505)
chr1 (58-155)||(2748566-2748663)
chr1 (1-45)||(23575312-23575357)
chr1 (1-46)||(23915786-23915831)
chr1 (1-50)||(45154138-45154187)
chr1 (1-46)||(52183841-52183886)
chr1 (69-163)||(8472364-8472455)
chr1 (1-45)||(33939292-33939336)
chr1 (1-45)||(37539586-37539630)
chr1 (1-45)||(47023185-47023229)
chr1 (3-46)||(31008253-31008296)
chr1 (3-46)||(45115273-45115316)
chr1 (3-45)||(4060274-4060316)
chr1 (290-332)||(15259494-15259536)
chr1 (104-174)||(15646912-15646982)
chr1 (4-46)||(41161569-41161611)
chr1 (61-118)||(26724339-26724396)
chr1 (61-118)||(26732456-26732513)
chr1 (5-46)||(31130693-31130734)
chr1 (1-45)||(31130914-31130959)
chr1 (68-173)||(36271192-36271297)
chr1 (1-45)||(23575419-23575463)
chr1 (15-47)||(37734888-37734920)
chr1 (1-45)||(45115165-45115209)
chr1 (3-46)||(6065455-6065498)
chr1 (15-46)||(6065576-6065607)
chr1 (3-42)||(8338673-8338712)
chr1 (15-46)||(23944031-23944062)
chr1 (15-46)||(27206874-27206905)
chr1 (15-46)||(29302058-29302089)
chr1 (15-46)||(29302180-29302211)
chr1 (15-46)||(33604106-33604137)
chr1 (15-46)||(40262581-40262612)
chr1 (3-46)||(46829975-46830018)
chr1 (15-46)||(48022589-48022620)
chr1 (15-46)||(48022710-48022741)
chr1 (15-45)||(639794-639824)
chr1 (15-45)||(639914-639944)
chr1 (15-45)||(1036002-1036032)
chr1 (15-45)||(8258058-8258088)
chr1 (15-49)||(17490479-17490513)
chr1 (60-153)||(18407466-18407557)
chr1 (3-45)||(27206754-27206796)
chr1 (1-42)||(52183574-52183616)
chr1 (1-46)||(14214630-14214675)
chr1 (60-101)||(15647258-15647299)
chr1 (1-45)||(31130795-31130840)
chr1 (1-49)||(8338776-8338824)
chr1 (1-41)||(10832095-10832135)
chr1 (15-47)||(14214543-14214575)
chr1 (75-127)||(44698067-44698119)
chr1 (1-45)||(52923424-52923468)
[»] chr7 (54 HSPs)
chr7 (70-168)||(23828904-23829002)
chr7 (69-167)||(38912906-38913004)
chr7 (60-175)||(5909067-5909182)
chr7 (69-168)||(25874360-25874459)
chr7 (1-46)||(10414933-10414978)
chr7 (61-178)||(21275621-21275738)
chr7 (1-50)||(34275181-34275230)
chr7 (58-150)||(34963375-34963467)
chr7 (58-168)||(7728582-7728692)
chr7 (1-47)||(24935885-24935931)
chr7 (1-46)||(4406073-4406118)
chr7 (1-45)||(8447712-8447756)
chr7 (1-45)||(28949376-28949420)
chr7 (61-173)||(40037716-40037827)
chr7 (1-47)||(6455650-6455696)
chr7 (1-46)||(41803823-41803868)
chr7 (3-46)||(34275294-34275338)
chr7 (58-129)||(16831275-16831346)
chr7 (3-46)||(38238887-38238930)
chr7 (58-100)||(18662319-18662361)
chr7 (108-174)||(18662356-18662422)
chr7 (60-118)||(46683064-46683122)
chr7 (4-45)||(10415043-10415084)
chr7 (58-151)||(46096747-46096840)
chr7 (1-45)||(36547582-36547626)
chr7 (58-118)||(38663682-38663742)
chr7 (15-46)||(2297325-2297356)
chr7 (15-46)||(2360443-2360474)
chr7 (292-363)||(4609583-4609654)
chr7 (15-46)||(8595262-8595293)
chr7 (15-46)||(10422923-10422954)
chr7 (16-47)||(16777885-16777916)
chr7 (3-46)||(25245246-25245289)
chr7 (15-46)||(34703558-34703589)
chr7 (15-46)||(38238777-38238808)
chr7 (3-38)||(41872154-41872189)
chr7 (15-50)||(43103062-43103097)
chr7 (3-45)||(8447820-8447862)
chr7 (15-45)||(8571497-8571527)
chr7 (3-45)||(25079202-25079244)
chr7 (60-122)||(42589694-42589756)
chr7 (16-46)||(46648743-46648773)
chr7 (67-101)||(49111259-49111293)
chr7 (4-45)||(4406183-4406224)
chr7 (69-118)||(8566261-8566310)
chr7 (16-45)||(8571377-8571406)
chr7 (1-41)||(3967704-3967744)
chr7 (1-37)||(3967806-3967842)
chr7 (15-47)||(15051198-15051230)
chr7 (3-47)||(25079310-25079354)
chr7 (15-47)||(26824899-26824931)
chr7 (104-168)||(26980244-26980308)
chr7 (122-174)||(36595367-36595419)
chr7 (69-168)||(46152239-46152336)
[»] scaffold0016 (1 HSPs)
scaffold0016 (58-163)||(79968-80073)
[»] chr8 (26 HSPs)
chr8 (58-168)||(44814057-44814165)
chr8 (1-47)||(31505031-31505077)
chr8 (1-46)||(31505139-31505184)
chr8 (79-168)||(42631687-42631776)
chr8 (3-47)||(31810437-31810481)
chr8 (1-48)||(13496427-13496474)
chr8 (3-50)||(40098750-40098797)
chr8 (58-168)||(34496889-34496999)
chr8 (1-45)||(24053592-24053636)
chr8 (4-45)||(1744227-1744268)
chr8 (4-45)||(10934598-10934639)
chr8 (236-276)||(10467136-10467176)
chr8 (3-46)||(31810328-31810371)
chr8 (15-46)||(40098875-40098906)
chr8 (79-150)||(41061227-41061298)
chr8 (15-45)||(1739680-1739710)
chr8 (15-45)||(9056136-9056166)
chr8 (3-45)||(10934706-10934748)
chr8 (5-43)||(13290032-13290070)
chr8 (4-46)||(13496539-13496581)
chr8 (15-45)||(14381233-14381263)
chr8 (3-45)||(27518418-27518460)
chr8 (3-45)||(41387865-41387907)
chr8 (91-147)||(14955259-14955315)
chr8 (10-46)||(29451725-29451761)
chr8 (3-43)||(33574890-33574930)
[»] chr6 (23 HSPs)
chr6 (1-47)||(6560650-6560696)
chr6 (1-45)||(31398221-31398265)
chr6 (58-128)||(30456799-30456869)
chr6 (58-174)||(33605057-33605173)
chr6 (3-46)||(8146052-8146095)
chr6 (3-45)||(6560760-6560802)
chr6 (1-47)||(18097161-18097207)
chr6 (1-45)||(8145943-8145988)
chr6 (290-335)||(9200878-9200923)
chr6 (1-45)||(2988794-2988838)
chr6 (3-47)||(17773604-17773648)
chr6 (69-147)||(3686811-3686889)
chr6 (61-147)||(10228329-10228414)
chr6 (3-48)||(30397717-30397762)
chr6 (91-175)||(8082495-8082579)
chr6 (15-47)||(21506456-21506488)
chr6 (15-46)||(31536305-31536336)
chr6 (15-45)||(14310636-14310666)
chr6 (3-45)||(28555050-28555092)
chr6 (15-45)||(30397839-30397869)
chr6 (1-47)||(31996600-31996646)
chr6 (4-45)||(14310516-14310557)
chr6 (1-38)||(16199122-16199159)
[»] scaffold0050 (2 HSPs)
scaffold0050 (5-47)||(6206-6248)
scaffold0050 (1-46)||(6314-6359)
[»] scaffold0024 (2 HSPs)
scaffold0024 (16-50)||(120135-120169)
scaffold0024 (15-46)||(120260-120291)
[»] scaffold0059 (1 HSPs)
scaffold0059 (1-45)||(4369-4413)
[»] scaffold0047 (2 HSPs)
scaffold0047 (15-47)||(61156-61188)
scaffold0047 (3-45)||(61265-61307)
[»] scaffold0039 (1 HSPs)
scaffold0039 (3-46)||(54382-54425)
[»] scaffold0536 (1 HSPs)
scaffold0536 (15-45)||(3945-3975)
[»] scaffold0268 (1 HSPs)
scaffold0268 (61-151)||(19123-19213)
[»] scaffold0027 (1 HSPs)
scaffold0027 (16-46)||(17161-17191)
[»] scaffold0020 (1 HSPs)
scaffold0020 (3-45)||(139399-139441)
[»] scaffold0650 (1 HSPs)
scaffold0650 (236-276)||(1627-1667)


Alignment Details
Target: scaffold0236 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 47 - 364
Target Start/End: Complemental strand, 20272 - 19956
Alignment:
Q  47 tattaagctactacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaa 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20272 tattaagctactacaaaaatgaaaatagttgataaattttaagtagaaaaagttattttttaaagtttcaatatattgaatgtatcatttccaagacaaa 20173  T
Q  147 atttcttctctagtcttcttaataagtgttctaagagggaggggtaaaacaactgtttattttgttttattgtaaaattgataaacgtagaggcaagaga 246  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  20172 atttcttctctagtcttcttaataagtgttctaagggggaggggtaaaacaactgtttattttgttttattgtaaaactgataaacgtggaggcaagaga 20073  T
Q  247 caagacagaaactgaaatttttgttcctcattaaatcacacaagtttaccatattgggcataggataagagtttcttttctgtttttatgctctgttcag 346  Q
    ||||||||   ||||||||||||| |||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||    
T  20072 caagacaggggctgaaatttttgtccctcattaaatcacacaagtttaccatatt-ggcatagactaagagtttcttttctgtttttatgctctgttcag 19974  T
Q  347 gcaactattgtaaatatt 364  Q
    ||||||||||||||||||    
T  19973 gcaactattgtaaatatt 19956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 290 - 364
Target Start/End: Complemental strand, 31706430 - 31706356
Alignment:
Q  290 gtttaccatattgggcataggataagagtttcttttctgtttttatgctctgttcaggcaactattgtaaatatt 364  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31706430 gtttaccatattgggcataggctaagagtttcttttctgtttttatgctttgttcaggcaactattgtaaatatt 31706356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 69 - 167
Target Start/End: Complemental strand, 15965893 - 15965795
Alignment:
Q  69 aaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtcttctta 167  Q
    ||||| ||||| |||||||||||||||||||||  ||||||| ||| |||  |||||||| | |||||| ||||||| ||||||||| |||||||||||    
T  15965893 aaataattgatgaattttaagtagaaaaagttacattttaaaatttaaatgcattgaatgcaccatttctaagacaacatttcttctttagtcttctta 15965795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 41180314 - 41180359
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  41180314 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 41180359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 5259488 - 5259530
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  5259488 ctaaaatgtagttttttgcttatattagtgaccggagggtgta 5259530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5259424 - 5259379
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  5259424 acctaaaatatagttttttgcttatattagtgaccggagggtgtat 5259379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7738451 - 7738407
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  7738451 acctaaaatgtagttttttgcttatattagtgactggagggtgta 7738407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41180252 - 41180208
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  41180252 acctaaaatgtagttttttgcttatattaatgaccggagggtgta 41180208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 4462655 - 4462577
Alignment:
Q  69 aaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaa 147  Q
    ||||| || |||| ||||| |||||||| ||||  ||||||| ||||||||| ||||||| ||||||||||||||||||    
T  4462655 aaataatttataagttttatgtagaaaatgttactttttaaactttcaatatcttgaatgcatcatttccaagacaaaa 4462577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18033394 - 18033350
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||    
T  18033394 acctaaaatatagttttttgcttatatcagtgaccggagggtgta 18033350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 18033458 - 18033504
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtattat 49  Q
    ||||||||||| |||||||||||| ||||||||||||| ||||||||    
T  18033458 ctaaaatgtagatttttgcttataatagtgaccggaggatgtattat 18033504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 26141866 - 26141900
Alignment:
Q  11 tagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||||||    
T  26141866 tagttttttgcttatattagtgaccggagggtgta 26141900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 1352436 - 1352387
Alignment:
Q  69 aaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaat 118  Q
    ||||| ||||||||||||||||| |||||||||  |||||||||||||||    
T  1352436 aaataattgataaattttaagtaaaaaaagttacattttaaagtttcaat 1352387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14772587 - 14772542
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||| | |||||||||||| |||||||||||||||||||    
T  14772587 acctaaaatgttgatttttgcttataatagtgaccggagggtgtat 14772542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 19367056 - 19366984
Alignment:
Q  82 attttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttct 155  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||    |||| ||||||||||||||||||    
T  19367056 attttaagtagaaaa-gttactttttaaagtttcaatttattgaatgctcaattttcaagacaaaatttcttct 19366984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 11795773 - 11795729
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtatt 47  Q
    ||||||||| | |||||||||||||||||||||||||||| ||||    
T  11795773 ctaaaatgttgatttttgcttatattagtgaccggagggtatatt 11795729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 1355471 - 1355380
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatt 149  Q
    ||||||||| |||||| |||||||||||||| ||||| || |||  ||| |||||||||||  | | |||| | ||||| ||||||||||||    
T  1355471 tacaaaaataaaaataattgataaattttaaatagaagaaattacatttaaaagtttcaatgcagtaaatgcaccattttcaagacaaaatt 1355380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 3851478 - 3851509
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  3851478 tttttgcttatattagtgaccggagggtgtat 3851509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 6763812 - 6763843
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  6763812 tttttgcttatattagtgaccggagggtgtat 6763843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 10437740 - 10437783
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||| | |||||||||||| |||||||||||||||||||    
T  10437740 ctaaaatgttgatttttgcttataatagtgaccggagggtgtat 10437783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 20518208 - 20518166
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  20518208 ctaaaatgtagtttttt-cttatattaatgaccggagggtgtat 20518166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 23914866 - 23914835
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  23914866 tttttgcttatattagtgaccggagggtgtat 23914835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 23914956 - 23914987
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  23914956 tttttgcttatattagtgaccggagggtgtat 23914987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 26300136 - 26300105
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  26300136 tttttgcttatattagtgaccggagggtgtat 26300105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 71296 - 71254
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||| ||| |||||||||||| ||||||||||||||||||    
T  71296 ctaaaatatagatttttgcttataatagtgaccggagggtgta 71254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 1996872 - 1996842
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  1996872 tttttgcttatattagtgaccggagggtgta 1996842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 1996963 - 1996993
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  1996963 tttttgcttatattagtgaccggagggtgta 1996993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 20019864 - 20019894
Alignment:
Q  16 ttttgcttatattagtgaccggagggtgtat 46  Q
    |||||||||||||||||||||||||||||||    
T  20019864 ttttgcttatattagtgaccggagggtgtat 20019894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 25772179 - 25772149
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  25772179 tttttgcttatattagtgaccggagggtgta 25772149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 25772271 - 25772301
Alignment:
Q  16 ttttgcttatattagtgaccggagggtgtat 46  Q
    |||||||||||||||||||||||||||||||    
T  25772271 ttttgcttatattagtgaccggagggtgtat 25772301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 27314500 - 27314470
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  27314500 tttttgcttatattagtgaccggagggtgta 27314470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 38370620 - 38370534
Alignment:
Q  69 aaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttct 155  Q
    ||||| ||||||||||||| ||||||||| |||  ||| |||  || |||  ||| |||| ||||||| ||||||||||||||||||    
T  38370620 aaataattgataaattttacgtagaaaaatttacttttaaaaacttaaatgcattcaatgcatcattttcaagacaaaatttcttct 38370534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 7306544 - 7306581
Alignment:
Q  8 atgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  7306544 atgtatttttttgcttataatagtgaccggagggtgta 7306581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 9515617 - 9515541
Alignment:
Q  69 aaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaa 146  Q
    ||||| ||||||||||||| ||| ||||| |  | |||||||||||||||  |||||||| || ||||||||||||||    
T  9515617 aaataattgataaattttatgtaaaaaaaatact-ttttaaagtttcaatgcattgaatgcataatttccaagacaaa 9515541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 13311199 - 13311170
Alignment:
Q  16 ttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||||||||||||||||||||||||    
T  13311199 ttttgcttatattagtgaccggagggtgta 13311170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 16441645 - 16441608
Alignment:
Q  8 atgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  16441645 atgtatttttttgcttataatagtgaccggagggtgta 16441608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 19531326 - 19531293
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtatta 48  Q
    |||||||||||||| |||||||||||||||||||    
T  19531326 tttttgcttatatttgtgaccggagggtgtatta 19531293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 36302246 - 36302158
Alignment:
Q  60 caaaaatgaaaatagttgataaattttaagtagaaaaagtta--tcttttaaagtttcaatatattgaatgtatcatttccaagacaaa 146  Q
    |||||| ||||||| ||| |||||||||| ||||||||||||  | |||| || |||||||  |||||||| || |||||| |||||||    
T  36302246 caaaaaggaaaataattggtaaattttaaatagaaaaagttatttttttttaaatttcaatgcattgaatgcattatttccgagacaaa 36302158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 25408568 - 25408536
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtatt 47  Q
    |||||||||||||| ||||||||||||||||||    
T  25408568 tttttgcttatatttgtgaccggagggtgtatt 25408536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 168
Target Start/End: Original strand, 32838637 - 32838747
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctct 157  Q
    |||||||||||||||| |||||||||||||| ||||||| ||||  |||||||||||||||  |||||||| |||||||||||||||||||||||||| |    
T  32838637 tacaaaaatgaaaataattgataaattttaaatagaaaatgttacattttaaagtttcaatgcattgaatgcatcatttccaagacaaaatttcttcttt 32838736  T
Q  158 agtcttcttaa 168  Q
    | | |||||||    
T  32838737 aattttcttaa 32838747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 19002758 - 19002871
Alignment:
Q  62 aaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtc 161  Q
    |||||||||||| ||||||||||||||||||||||| |||  ||||||| |||||||  |||||||| | ||||||||||||||| |||||||| |||||    
T  19002758 aaaatgaaaataattgataaattttaagtagaaaaatttactttttaaaatttcaatgcattgaatgcaccatttccaagacaaagtttcttctttagtc 19002857  T
Q  162 ttcttaataagtgt 175  Q
    || |||| ||||||    
T  19002858 tttttaacaagtgt 19002871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 167
Target Start/End: Original strand, 41252763 - 41252862
Alignment:
Q  69 aaatagttgataaattttaagtagaaaaag-ttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtcttctta 167  Q
    ||||| ||||| |||||||||||||||||  |||  |||||||||||||||  |||||||| |||||||||||||||| || |||||| |||||||||||    
T  41252763 aaataattgatgaattttaagtagaaaaaaattacattttaaagtttcaatgcattgaatgcatcatttccaagacaacatatcttctttagtcttctta 41252862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 24457139 - 24457093
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtatt 47  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  24457139 acctaaaatgtaattttttgcttatattagtgaccggagggtgtatt 24457093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 24457204 - 24457246
Alignment:
Q  4 taaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  24457204 taaaatgtagttttttgcttatattagtgaccggagggtgtat 24457246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19950156 - 19950112
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  19950156 acctaaaatatagttttttgcttatattagtgaccggagggtgta 19950112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2060244 - 2060198
Alignment:
Q  1 acctaaaatgtagtttttt-gcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  2060244 acctaaaatgtagtttttttgcttatattagtgaccggagggtgtat 2060198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26234063 - 26234017
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtatt 47  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||    
T  26234063 acctagaatatagttttttgcttatattagtgaccggagggtgtatt 26234017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 33847546 - 33847488
Alignment:
Q  109 aagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtcttctta 167  Q
    ||||||||||  |||||||| |||||||||||||||| ||||||||| |||||||||||    
T  33847546 aagtttcaatgcattgaatgcatcatttccaagacaacatttcttctttagtcttctta 33847488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 168
Target Start/End: Original strand, 752182 - 752267
Alignment:
Q  83 ttttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtcttcttaa 168  Q
    ||||| ||||||||| |||  |||| |||||||||| | ||||||| |||| | ||||||||||||||||||| ||| ||||||||    
T  752182 ttttatgtagaaaaaattactttttcaagtttcaatgtgttgaatgcatcaatcccaagacaaaatttcttctttagacttcttaa 752267  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 29819806 - 29819765
Alignment:
Q  4 taaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  29819806 taaaatgtagttttttgtttatattagtgaccggagggtgta 29819765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 38181864 - 38181909
Alignment:
Q  4 taaaatgtagttttttgcttatattagtgaccggagggtgtattat 49  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||    
T  38181864 taaaatgtagttttttgcttataatagtaaccggagggtgtattat 38181909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 1388480 - 1388572
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaattt 150  Q
    ||||||||| |||||| | |||||||||||| || |||| ||||  |||||| |||| |||  |||||||||||||||| |||||||| ||||    
T  1388480 tacaaaaataaaaataatagataaattttaaataaaaaaggttactttttaatgttttaatgcattgaatgtatcattttcaagacaacattt 1388572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 2060612 - 2060648
Alignment:
Q  10 gtagttttttgcttatattagtgaccggagggtgtat 46  Q
    |||||||||||||||||||||||||||||||||||||    
T  2060612 gtagttttttgcttatattagtgaccggagggtgtat 2060648  T

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Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9431236 - 9431192
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||| |||||| |||||||||||||||||||||||||    
T  9431236 acctaaaatgtaattttttacttatattagtgaccggagggtgta 9431192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 5574213 - 5574256
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  5574213 ctaaaaagtagatttttgcttatattagtgaccggagggtgtat 5574256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 19612978 - 19612935
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||    
T  19612978 ctaaaatatagatttttgcttatattagtgaccggagggtgtat 19612935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 38721626 - 38721681
Alignment:
Q  64 aatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaata 119  Q
    |||||||||| |||||||||||||| || |||||||||  ||||||||||||||||    
T  38721626 aatgaaaataattgataaattttaaataaaaaaagttaatttttaaagtttcaata 38721681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 15119880 - 15119922
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||||| |||||||||||| ||||||||||||||||||    
T  15119880 ctaaaatgtagatttttgcttataatagtgaccggagggtgta 15119922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 153
Target Start/End: Complemental strand, 4640288 - 4640196
Alignment:
Q  61 aaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttctt 153  Q
    ||||||||||||| || |||| ||||| ||||||||||| |  ||||||| ||||||  | ||||||| ||||||  ||||||| ||||||||    
T  4640288 aaaaatgaaaataatttataagttttacgtagaaaaagtaactttttaaattttcaacgtgttgaatgcatcattctcaagacataatttctt 4640196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19950218 - 19950262
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||| ||||| |||||||||||||||||||||||| ||||    
T  19950218 acctaaaatatagttgtttgcttatattagtgaccggaggatgta 19950262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 38465826 - 38465782
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtatt 47  Q
    ||||||||| | |||||||||||| ||||||||||||||||||||    
T  38465826 ctaaaatgttgatttttgcttataatagtgaccggagggtgtatt 38465782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 38594374 - 38594338
Alignment:
Q  10 gtagttttttgcttatattagtgaccggagggtgtat 46  Q
    |||| ||||||||||||||||||||||||||||||||    
T  38594374 gtagatttttgcttatattagtgaccggagggtgtat 38594338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 38597970 - 38597934
Alignment:
Q  10 gtagttttttgcttatattagtgaccggagggtgtat 46  Q
    |||| ||||||||||||||||||||||||||||||||    
T  38597970 gtagatttttgcttatattagtgaccggagggtgtat 38597934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 38598055 - 38598087
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtatt 47  Q
    |||||||||||||||||||||||||||||||||    
T  38598055 tttttgcttatattagtgaccggagggtgtatt 38598087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 3121525 - 3121564
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggt 42  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  3121525 ctaaaatgtagatttttgcttataatagtgaccggagggt 3121564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 38594459 - 38594490
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  38594459 tttttgcttatattagtgaccggagggtgtat 38594490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 1981009 - 1980979
Alignment:
Q  16 ttttgcttatattagtgaccggagggtgtat 46  Q
    |||||||||||||||||||||||||||||||    
T  1981009 ttttgcttatattagtgaccggagggtgtat 1980979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 3887948 - 3887978
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  3887948 tttttgcttatattagtgaccggagggtgta 3887978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 21488130 - 21488172
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||| |||||||||||||||| ||||||||| |||||    
T  21488130 ctaaaatgtaattttttgcttatattaatgaccggagagtgta 21488172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 37195076 - 37195046
Alignment:
Q  16 ttttgcttatattagtgaccggagggtgtat 46  Q
    |||||||||||||||||||||||||||||||    
T  37195076 ttttgcttatattagtgaccggagggtgtat 37195046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 3098229 - 3098266
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagg 40  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  3098229 ctaaaatgtagatttttgcttataatagtgaccggagg 3098266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 25270959 - 25270996
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagg 40  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  25270959 ctaaaatgtagatttttgcttataatagtgaccggagg 25270996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 26229472 - 26229435
Alignment:
Q  14 ttttttgcttatattagtgaccggagggtgtattatta 51  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  26229472 ttttttgcttataatagtgaccggagggtgtatgatta 26229435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 26234127 - 26234172
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtatta 48  Q
    ||||||||||   ||||||||||| |||||||||||||||||||||    
T  26234127 ctaaaatgtaaacttttgcttataatagtgaccggagggtgtatta 26234172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 32316518 - 32316563
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||| | |||||||||||||| ||||||||||||| |||||    
T  32316518 acctaaaatatggttttttgcttataatagtgaccggaggatgtat 32316563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8266413 - 8266457
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||| || ||||||||||||| |||||||||||| |||||    
T  8266413 acctaaaatataattttttgcttataatagtgaccggagagtgta 8266457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 8383288 - 8383324
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggag 39  Q
    ||||||||||||||||||||||||||| | |||||||    
T  8383288 ctaaaatgtagttttttgcttatattaataaccggag 8383324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 11477054 - 11477086
Alignment:
Q  104 ttttaaagtttcaatatattgaatgtatcattt 136  Q
    ||||||||||||||| |||||||||||||||||    
T  11477054 ttttaaagtttcaatgtattgaatgtatcattt 11477086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 40349691 - 40349639
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaa 110  Q
    |||||||||||||||| | | ||||||||||||| |||||||||  |||||||    
T  40349691 tacaaaaatgaaaataatcggtaaattttaagtaaaaaaagttaatttttaaa 40349639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 69 - 167
Target Start/End: Complemental strand, 41899173 - 41899075
Alignment:
Q  69 aaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtcttctta 167  Q
    ||||| ||||| |||||||||||||||||||||  |||||||||||||||  |||||||| | |||||||||||||| ||||||||| |||||||||||    
T  41899173 aaataattgatgaattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaatatttcttctttagtcttctta 41899075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 5168615 - 5168521
Alignment:
Q  69 aaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtctt 163  Q
    ||||| ||||| ||||||||||||||||| |||| ||||||| |||||||| |||||||| | ||||||||||| || ||||||||| |||||||    
T  5168615 aaataattgatgaattttaagtagaaaaaattatattttaaaatttcaatacattgaatgcaccatttccaagataacatttcttctttagtctt 5168521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 8839684 - 8839775
Alignment:
Q  60 caaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttctt 153  Q
    |||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||||||  |||||||| || |||| ||||||||||||||||    
T  8839684 caaaaatgaaaataattggtaaattttaagtagaaaa-gttat-ttttaaagtttcaatgcattgaatgcattattttcaagacaaaatttctt 8839775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 174
Target Start/End: Complemental strand, 38868937 - 38868831
Alignment:
Q  68 aaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtcttctta 167  Q
    |||||| || |||| ||||| |||||||||||||  ||||||| ||||||| | ||||||| |||||| ||||||||||||||| ||| |||  ||||||    
T  38868937 aaaataatttataagttttatgtagaaaaagttactttttaaactttcaatgtgttgaatgcatcattcccaagacaaaatttcctctttagatttctta 38868838  T
Q  168 ataagtg 174  Q
    | |||||    
T  38868837 acaagtg 38868831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 56328553 - 56328595
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  56328553 ctaaaatgtagttttttgcttatattagtgaccggagggtgta 56328595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 49481981 - 49482026
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  49481981 acctagaatgtagttttttgcttatattagtgaccggagggtgtat 49482026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 21884058 - 21884012
Alignment:
Q  1 acctaaaatgtagtttttt-gcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  21884058 acctaaaatgtagtttttttgcttatattagtgaccggagggtgtat 21884012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 56328489 - 56328443
Alignment:
Q  1 acctaaaatgtagtttttt-gcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  56328489 acctaaaatgtagtttttttgcttatattagtgaccggagggtgtat 56328443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 3167167 - 3167223
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagttt 114  Q
    |||||||||||||||| ||| |||||||||||||||||| ||||| ||| |||||||    
T  3167167 tacaaaaatgaaaataattggtaaattttaagtagaaaaggttatttttcaaagttt 3167223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 4044402 - 4044438
Alignment:
Q  4 taaaatgtagttttttgcttatattagtgaccggagg 40  Q
    |||||||||||||||||||||||||||||||||||||    
T  4044402 taaaatgtagttttttgcttatattagtgaccggagg 4044438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16468243 - 16468199
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||    
T  16468243 acctaaaatgtaattttttgcttatattagtgaccggaggatgta 16468199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21884120 - 21884164
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||    
T  21884120 acctaaaatatagttttttgcttatattaatgaccggagggtgta 21884164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 51232310 - 51232266
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||    
T  51232310 acctaaaatgtagttttttacttatattagtgaccggaaggtgta 51232266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 42563388 - 42563467
Alignment:
Q  90 tagaaaaagttatctttt-aaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtcttcttaa 168  Q
    ||||||||||||| |||| |||||||||||  |||||||| | |||||| |||| |||||||||||  ||||||||||||    
T  42563388 tagaaaaagttatttttttaaagtttcaatgcattgaatgcaccatttctaagataaaatttcttccttagtcttcttaa 42563467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 3784143 - 3784073
Alignment:
Q  70 aatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaa 140  Q
    |||| ||||| ||||||||||||||||| ||   ||||||||||| |||  ||||||||||||||||||||    
T  3784143 aataattgatgaattttaagtagaaaaaatttgattttaaagttttaatgcattgaatgtatcatttccaa 3784073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 6126760 - 6126802
Alignment:
Q  8 atgtagttttttgcttatattagtgaccggagggtgtattatt 50  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  6126760 atgtatttttttgcttataatagtgaccggagggtgtattatt 6126802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 6167916 - 6167846
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatg 128  Q
    |||| |||| |||||| ||||| ||||||||||| |||||||||  |||||||||||||||  ||||||||    
T  6167916 tacacaaataaaaataattgatgaattttaagtaaaaaaagttacattttaaagtttcaatgcattgaatg 6167846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24851511 - 24851556
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||| | |||||||||||||| |||||||||||||||||||    
T  24851511 acctaaaatatggttttttgcttataatagtgaccggagggtgtat 24851556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23071507 - 23071551
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||| || ||||||||| ||||||||||||||||||||||    
T  23071507 acctaaaatataattttttgctcatattagtgaccggagggtgta 23071551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 14450994 - 14450951
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||| |||||||||||| |||||| ||||||||||||    
T  14450994 ctaaaatgtagatttttgcttataatagtgatcggagggtgtat 14450951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 28702177 - 28702208
Alignment:
Q  16 ttttgcttatattagtgaccggagggtgtatt 47  Q
    ||||||||||||||||||||||||||||||||    
T  28702177 ttttgcttatattagtgaccggagggtgtatt 28702208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 54713135 - 54713092
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||  |||||||||||| |||||||||||||||||||    
T  54713135 ctaaaatgtaaatttttgcttataatagtgaccggagggtgtat 54713092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 55087826 - 55087861
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtattatt 50  Q
    ||||||||||||||||||||||||||||||| ||||    
T  55087826 tttttgcttatattagtgaccggagggtgtactatt 55087861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 6317073 - 6317015
Alignment:
Q  69 aaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaat 127  Q
    ||||| |||||||||||||  | ||||||||||| |||||| |||||||||| ||||||    
T  6317073 aaataattgataaattttatattgaaaaagttattttttaatgtttcaatatgttgaat 6317015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 28702085 - 28702055
Alignment:
Q  16 ttttgcttatattagtgaccggagggtgtat 46  Q
    |||||||||||||||||||||||||||||||    
T  28702085 ttttgcttatattagtgaccggagggtgtat 28702055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 52817682 - 52817712
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  52817682 tttttgcttatattagtgaccggagggtgta 52817712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 20294532 - 20294573
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggt 42  Q
    ||||||||||||  ||||||||||||||| ||||||||||||    
T  20294532 acctaaaatgtaaatttttgcttatattaatgaccggagggt 20294573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 24858687 - 24858618
Alignment:
Q  104 ttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtcttcttaataagt 173  Q
    ||||||| |||||||  |||||||| ||||||||||||||||| ||||| |  ||| |||||||| ||||    
T  24858687 ttttaaaatttcaatgcattgaatgcatcatttccaagacaaagtttctacgttagacttcttaacaagt 24858618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2440949 - 2440905
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||| || |||||||||||||||||||| |||| ||||||    
T  2440949 acctaaaatataattttttgcttatattagtgatcggatggtgta 2440905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 5281250 - 5281282
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtatt 47  Q
    ||||| |||||||||||||||||||||||||||    
T  5281250 tttttacttatattagtgaccggagggtgtatt 5281282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 14451058 - 14451102
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||||||  |||||||||||||||||||| |||| |||||    
T  14451058 acctaaaatgtaaatttttgcttatattagtgacaggagagtgta 14451102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 21224788 - 21224832
Alignment:
Q  3 ctaaaatgtagtttttt-gcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||| | ||||| |||||||||||||||||||    
T  21224788 ctaaaatgtagtttttttgtttataatagtgaccggagggtgtat 21224832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 47181595 - 47181559
Alignment:
Q  4 taaaatgtagttttttgcttatattagtgaccggagg 40  Q
    |||||||||| |||||||||||| |||||||||||||    
T  47181595 taaaatgtagatttttgcttataatagtgaccggagg 47181559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 53333557 - 53333633
Alignment:
Q  61 aaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttc 137  Q
    |||||| |||||| || |||||||| | |||||||||||||  ||||||| ||| ||||| ||||||| || |||||    
T  53333557 aaaaataaaaataatttataaatttcatgtagaaaaagttactttttaaacttttaatatcttgaatgcattatttc 53333633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 54164928 - 54164960
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtatt 47  Q
    |||||||||||| ||||||||||||||||||||    
T  54164928 tttttgcttataatagtgaccggagggtgtatt 54164960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 81 - 167
Target Start/End: Original strand, 1402014 - 1402100
Alignment:
Q  81 aattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtcttctta 167  Q
    |||||||||||||||||||||  |||||||||||||||  |||||||| | |||||||||||||| ||||||||| |||||||||||    
T  1402014 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttctta 1402100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 364
Target Start/End: Original strand, 4741093 - 4741168
Alignment:
Q  290 gtttaccatattgggcataggataagagtttcttttctg-tttttatgctctgttcaggcaactattgtaaatatt 364  Q
    ||||||||| || |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  4741093 gtttaccattttaggcataggctaagagtttcttttctgttttttatgctctgttcaggcaactattgtatatatt 4741168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 58 - 168
Target Start/End: Complemental strand, 45153612 - 45153502
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctct 157  Q
    ||||||| || ||||| |||||||||||||||||||||||||||  || ||||||||||||  |||||||| | ||||| ||||| ||||||| |||| |    
T  45153612 tacaaaagtggaaataattgataaattttaagtagaaaaagttactttataaagtttcaatgcattgaatgcaccattttcaagataaaatttattcttt 45153513  T
Q  158 agtcttcttaa 168  Q
    ||  |||||||    
T  45153512 agaattcttaa 45153502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 163
Target Start/End: Complemental strand, 31437906 - 31437802
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctct 157  Q
    |||||||||||||||| ||||||| |||||| ||||||||||||| ||||||||||| ||| |||||||||    ||||  ||||||||||||||| | |    
T  31437906 tacaaaaatgaaaataattgataa-ttttaaatagaaaaagttattttttaaagtttgaatgtattgaatgcgctatttttaagacaaaatttctttttt 31437808  T
Q  158 agtctt 163  Q
    ||||||    
T  31437807 agtctt 31437802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25881175 - 25881131
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  25881175 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 25881131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 25881237 - 25881281
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  25881237 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 25881281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 44720961 - 44720854
Alignment:
Q  61 aaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagt 160  Q
    ||||||| ||||| ||| ||||||||| ||  |||||||||  ||| ||||||| |||  |||||||| | ||||| ||||||||||||||||||||||     
T  44720961 aaaaatggaaataattggtaaattttatgttcaaaaagttacttttgaaagttttaatgcattgaatgcaccattttcaagacaaaatttcttctctaga 44720862  T
Q  161 cttcttaa 168  Q
    ||||||||    
T  44720861 cttcttaa 44720854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 168
Target Start/End: Complemental strand, 23070939 - 23070829
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctct 157  Q
    |||||||||||||||| |||| ||| ||||| || |||||||| | ||||||| |||||||  |||||||  |||| || ||||| |||||||||||| |    
T  23070939 tacaaaaatgaaaataattgaaaaaatttaattataaaaagttgttttttaaaatttcaattcattgaatacatcaattacaagataaaatttcttcttt 23070840  T
Q  158 agtcttcttaa 168  Q
    || ||||||||    
T  23070839 agacttcttaa 23070829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8439297 - 8439253
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  8439297 acctaaaatgtagttttttgcttatattagtgaccggaggatgta 8439253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38677666 - 38677711
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||    
T  38677666 acctagaatatagttttttgcttatattagtgaccggagggtgtat 38677711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8439359 - 8439403
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  8439359 acctaaaatataattttttgcttatattagtgaccggagggtgta 8439403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 8504951 - 8504998
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtatta 48  Q
    |||||||||||||||||||| |||||||| |||||||| |||||||||    
T  8504951 acctaaaatgtagttttttgtttatattaatgaccggatggtgtatta 8504998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 9170149 - 9170106
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    |||||||||| ||||||||||||| |||||||||||||||||||    
T  9170149 ctaaaatgtaattttttgcttataatagtgaccggagggtgtat 9170106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 153
Target Start/End: Complemental strand, 23073753 - 23073658
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttctt 153  Q
    |||||||||||||||| || | ||| ||||| || |||||||||| |||||||||||||||  |||||||  | || || ||||| ||||||||||    
T  23073753 tacaaaaatgaaaataattaaaaaaatttaattataaaaagttatgttttaaagtttcaattcattgaatacaccaattacaagataaaatttctt 23073658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 8504887 - 8504845
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||||| |||||||||||| ||||||||||||||||||    
T  8504887 ctaaaatgtagatttttgcttataatagtgaccggagggtgta 8504845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 50261048 - 50261081
Alignment:
Q  14 ttttttgcttatattagtgaccggagggtgtatt 47  Q
    ||||||||||||||||||||||||||||||||||    
T  50261048 ttttttgcttatattagtgaccggagggtgtatt 50261081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 4204051 - 4204107
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagttt 114  Q
    ||||||||| |||||| |||||||||||||| || |||||||||  |||||||||||    
T  4204051 tacaaaaataaaaataattgataaattttaaataaaaaaagttactttttaaagttt 4204107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12708781 - 12708825
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||| | |||||||||||||| ||||||||||||||||||    
T  12708781 acctaaaatatggttttttgcttataatagtgaccggagggtgta 12708825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 17552502 - 17552470
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtatt 47  Q
    |||||||||||||||||||||||||||||||||    
T  17552502 tttttgcttatattagtgaccggagggtgtatt 17552470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 51239273 - 51239237
Alignment:
Q  10 gtagttttttgcttatattagtgaccggagggtgtat 46  Q
    |||| ||||||||||||||||||||||||||||||||    
T  51239273 gtagatttttgcttatattagtgaccggagggtgtat 51239237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 51239358 - 51239389
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  51239358 tttttgcttatattagtgaccggagggtgtat 51239389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 51617447 - 51617478
Alignment:
Q  16 ttttgcttatattagtgaccggagggtgtatt 47  Q
    ||||||||||||||||||||||||||||||||    
T  51617447 ttttgcttatattagtgaccggagggtgtatt 51617478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 181
Target Start/End: Original strand, 52685097 - 52685220
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctct 157  Q
    |||||||||  ||||| ||| |||||||||| |||||||| |||  |||||  ||||| ||  |||||||| |  ||||| ||||  ||||||||||| |    
T  52685097 tacaaaaatagaaataattgctaaattttaaatagaaaaatttactttttatcgtttctatgcattgaatgcacaatttctaagatgaaatttcttcttt 52685196  T
Q  158 agtcttcttaataagtgttctaag 181  Q
    |  |||||||||||||||| ||||    
T  52685197 aaacttcttaataagtgttgtaag 52685220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 5919458 - 5919424
Alignment:
Q  14 ttttttgcttatattagtgaccggagggtgtatta 48  Q
    ||||||||||||||| |||||||||||||||||||    
T  5919458 ttttttgcttatatttgtgaccggagggtgtatta 5919424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 12047281 - 12047239
Alignment:
Q  4 taaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||| |||||| ||||||||||||| ||||||||||||    
T  12047281 taaaatgtaattttttacttatattagtgatcggagggtgtat 12047239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 21404009 - 21404039
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  21404009 tttttgcttatattagtgaccggagggtgta 21404039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 168
Target Start/End: Complemental strand, 23057202 - 23057092
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctct 157  Q
    ||||||||||||| || |||| ||| ||||| || ||||||| || ||||||||||| |||  |||||||  |||| || || || |||||||||||| |    
T  23057202 tacaaaaatgaaattaattgaaaaaatttaattataaaaagtcattttttaaagttttaattcattgaatacatcaattacacgataaaatttcttcttt 23057103  T
Q  158 agtcttcttaa 168  Q
    |  ||||||||    
T  23057102 aaacttcttaa 23057092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 29565134 - 29565104
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  29565134 tttttgcttatattagtgaccggagggtgta 29565104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 36362629 - 36362599
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  36362629 tttttgcttatattagtgaccggagggtgta 36362599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 40696184 - 40696114
Alignment:
Q  104 ttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtcttcttaataagtg 174  Q
    |||| |||||| ||||| | |||||||||| ||  ||||||||||||||||| ||| ||||||||| ||||    
T  40696184 ttttcaagttttaatatgtcgaatgtatcaattttaagacaaaatttcttctttaggcttcttaatgagtg 40696114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 41349685 - 41349655
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  41349685 tttttgcttatattagtgaccggagggtgta 41349655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 41349776 - 41349806
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  41349776 tttttgcttatattagtgaccggagggtgta 41349806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 52168308 - 52168278
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  52168308 tttttgcttatattagtgaccggagggtgta 52168278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 52215983 - 52216025
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||| | |||||||||||| ||||||||||||||||||    
T  52215983 ctaaaatgttgatttttgcttataatagtgaccggagggtgta 52216025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 54987249 - 54987307
Alignment:
Q  60 caaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaat 118  Q
    |||||||| |||||  |||||||||||||||||||||| | |  |||||||||||||||    
T  54987249 caaaaatgtaaataaatgataaattttaagtagaaaaaataactttttaaagtttcaat 54987307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 19857577 - 19857536
Alignment:
Q  4 taaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||| |||||| ||||||||||||| |||||||||||    
T  19857577 taaaatgtaattttttacttatattagtgatcggagggtgta 19857536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 21217203 - 21217166
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagg 40  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  21217203 ctaaaatgtagatttttgcttataatagtgaccggagg 21217166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 24075484 - 24075447
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagg 40  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  24075484 ctaaaatgttgttttttgcttataatagtgaccggagg 24075447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 40470534 - 40470563
Alignment:
Q  16 ttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||||||||||||||||||||||||    
T  40470534 ttttgcttatattagtgaccggagggtgta 40470563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 48600702 - 48600645
Alignment:
Q  69 aaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaa 126  Q
    ||||| || |||||||||| ||||||||| |||  ||||||||||||||| |||||||    
T  48600702 aaataatttataaattttacgtagaaaaaattactttttaaagtttcaatgtattgaa 48600645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 51617356 - 51617323
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtatta 48  Q
    |||||| |||||||||||||||||||||||||||    
T  51617356 tttttggttatattagtgaccggagggtgtatta 51617323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 12744938 - 12744894
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtatt 47  Q
    ||||||||||  |||||||||||| ||||||||||||||| ||||    
T  12744938 ctaaaatgtaagtttttgcttataatagtgaccggagggtctatt 12744894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 26104813 - 26104773
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggaggg 41  Q
    ||||||||||||  ||||||||||||||||||||| |||||    
T  26104813 acctaaaatgtaaatttttgcttatattagtgaccagaggg 26104773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 54690935 - 54690975
Alignment:
Q  6 aaatgtagtttt-ttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  54690935 aaatgtagtttttttgcttataatagtgaccggagggtgta 54690975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 61)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 69 - 167
Target Start/End: Original strand, 25129864 - 25129962
Alignment:
Q  69 aaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtcttctta 167  Q
    ||||| ||||| |||||||||||||||||||||  |||||||||||||||  |||||||| | ||||||||||| || ||||||||| |||||||||||    
T  25129864 aaataattgatgaattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagataacatttcttctttagtcttctta 25129962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 174
Target Start/End: Complemental strand, 1609823 - 1609708
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctct 157  Q
    |||||| || |||||| ||||||||||||||||||||||| |||  |||||| ||||||||| |||||||| ||||||| |||||||||| || |||| |    
T  1609823 tacaaagataaaaataattgataaattttaagtagaaaaaattacattttaa-gtttcaatacattgaatgcatcattttcaagacaaaagttgttcttt 1609725  T
Q  158 agtcttcttaataagtg 174  Q
    | ||||||||| |||||    
T  1609724 aatcttcttaacaagtg 1609708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28725567 - 28725613
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtatt 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  28725567 acctaaaatgtagttttttgcttatattagtgaccggagggtgtatt 28725613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 6283574 - 6283525
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtattatt 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6283574 acctaaaatgtagttttttgcttatattagtgaccggagggtgtagtatt 6283525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36040185 - 36040140
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  36040185 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 36040140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36040247 - 36040292
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  36040247 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 36040292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 174
Target Start/End: Original strand, 36995238 - 36995355
Alignment:
Q  58 tacaaaaatgaaaatagttgataaatttt-aagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctc 156  Q
    |||||||||| ||||| ||| |||||||| |||||||||||||||  || |||| |||||||  |||||||| | ||||||||| ||||||||||||||     
T  36995238 tacaaaaatggaaataattggtaaatttttaagtagaaaaagttactttataaaatttcaatgcattgaatgcaccatttccaaaacaaaatttcttctt 36995337  T
Q  157 tagtcttcttaataagtg 174  Q
    | | |||||||| |||||    
T  36995338 tggacttcttaacaagtg 36995355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 24115790 - 24115745
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  24115790 acctaaaatgtagttttttgcttatattagtgaccagagggtgtat 24115745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 6283636 - 6283680
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  6283636 acctaaaatgtagttttttgcttatattagtgaccggatggtgta 6283680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28725505 - 28725461
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  28725505 acctaaaatatagttttttgcttatattagtgaccggagggtgta 28725461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 155
Target Start/End: Complemental strand, 2748663 - 2748566
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttct 155  Q
    |||||||||  ||||| ||||||||||||||||| ||||| |||  ||| |||||||||||  |||||||  | |||||  |||||||||||||||||    
T  2748663 tacaaaaatagaaataattgataaattttaagtaaaaaaaattacttttcaaagtttcaatgcattgaattcaccatttttaagacaaaatttcttct 2748566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23575357 - 23575312
Alignment:
Q  1 acctaaaatgtagtttttt-gcttatattagtgaccggagggtgta 45  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  23575357 acctaaaatgtagtttttttgcttatattagtgaccggagggtgta 23575312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 23915831 - 23915786
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||    
T  23915831 acctaaaatgtagttttttgcttgtattagtgaccggaggatgtat 23915786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 45154138 - 45154187
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtattatt 50  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| ||||    
T  45154138 acctaaaatatagttttttgcttatatcagtgaccggagggtgtagtatt 45154187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 52183841 - 52183886
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||    
T  52183841 acctaaaatatagttttttgcttatattagtgaccagagggtgtat 52183886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 8472364 - 8472455
Alignment:
Q  69 aaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtctt 163  Q
    ||||| |||||||||||||||||||||||||||     ||||||||||||   ||||||| | |||||||||||||| ||||||||  |||||||    
T  8472364 aaataattgataaattttaagtagaaaaagtta---cataaagtttcaatgctttgaatgcaccatttccaagacaacatttcttcattagtctt 8472455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33939336 - 33939292
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||    
T  33939336 acctagaatatagttttttgcttatattagtgaccggagggtgta 33939292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37539630 - 37539586
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||    
T  37539630 acctaaaatatagttttttacttatattagtgaccggagggtgta 37539586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 47023229 - 47023185
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||    
T  47023229 acctaaaatgtagttttttacttatattagtgatcggagggtgta 47023185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 31008296 - 31008253
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  31008296 ctaaaaagtagatttttgcttatattagtgaccggagggtgtat 31008253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 45115273 - 45115316
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||| |||||||||||| |||||||||||||||||||    
T  45115273 ctaaaatgtagatttttgcttataatagtgaccggagggtgtat 45115316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 4060274 - 4060316
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  4060274 ctaaaaagtagatttttgcttatattagtgaccggagggtgta 4060316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 15259494 - 15259536
Alignment:
Q  290 gtttaccatattgggcataggataagagtttcttttctgtttt 332  Q
    |||||||||| |||||||||| |||||||||||||||||||||    
T  15259494 gtttaccatactgggcataggctaagagtttcttttctgtttt 15259536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 15646982 - 15646912
Alignment:
Q  104 ttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtcttcttaataagtg 174  Q
    |||||||||||||||  ||| |||| | |||||||||||||||||||||||| || |||| |||| |||||    
T  15646982 ttttaaagtttcaatgcattcaatgcaccatttccaagacaaaatttcttctttaatctttttaacaagtg 15646912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 41161569 - 41161611
Alignment:
Q  4 taaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  41161569 taaaatgttattttttgcttatattagtgaccggagggtgtat 41161611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 26724396 - 26724339
Alignment:
Q  61 aaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaat 118  Q
    ||||||||||||| ||||||||||||||| | ||||| ||| |||||||| |||||||    
T  26724396 aaaaatgaaaataattgataaattttaagcacaaaaacttaccttttaaaatttcaat 26724339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 26732513 - 26732456
Alignment:
Q  61 aaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaat 118  Q
    ||||||||||||| ||||||||||||||| | ||||| ||| |||||||| |||||||    
T  26732513 aaaaatgaaaataattgataaattttaagcacaaaaacttaccttttaaaatttcaat 26732456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 31130734 - 31130693
Alignment:
Q  5 aaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  31130734 aaaatgtaattttttgcttatattagtgagcggagggtgtat 31130693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31130914 - 31130959
Alignment:
Q  1 acctaaaatgtagtttt-ttgcttatattagtgaccggagggtgta 45  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||    
T  31130914 acctaaaatgtagtttttttgcttatattagtgatcggagggtgta 31130959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 173
Target Start/End: Complemental strand, 36271297 - 36271192
Alignment:
Q  68 aaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtcttctta 167  Q
    |||||| ||||||| ||| | ||||||||| |||| ||  |||||||||||  |||||||||||||||  ||| ||||| ||| |||| ||| |||||||    
T  36271297 aaaataattgataagtttcatgtagaaaaaattattttccaaagtttcaatgcattgaatgtatcattcacaaaacaaagtttattctttagacttctta 36271198  T
Q  168 ataagt 173  Q
    | ||||    
T  36271197 acaagt 36271192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23575419 - 23575463
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||    
T  23575419 acctaaaatgtaattttttacttatattagtgaccggaggatgta 23575463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 37734888 - 37734920
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtatt 47  Q
    |||||||||||||||||||||||||||||||||    
T  37734888 tttttgcttatattagtgaccggagggtgtatt 37734920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 45115209 - 45115165
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||| ||| ||||||||||||||||||| |||||||||||    
T  45115209 acctaaaatatagatttttgcttatattagtgatcggagggtgta 45115165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 6065498 - 6065455
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    |||||| ||||  |||||||||||||||||||||||||||||||    
T  6065498 ctaaaaagtagaattttgcttatattagtgaccggagggtgtat 6065455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 6065576 - 6065607
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  6065576 tttttgcttatattagtgaccggagggtgtat 6065607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 8338712 - 8338673
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggt 42  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  8338712 ctaaaatgtagatttttgcttataatagtgaccggagggt 8338673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 23944062 - 23944031
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  23944062 tttttgcttatattagtgaccggagggtgtat 23944031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 27206874 - 27206905
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  27206874 tttttgcttatattagtgaccggagggtgtat 27206905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 29302089 - 29302058
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  29302089 tttttgcttatattagtgaccggagggtgtat 29302058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 29302180 - 29302211
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  29302180 tttttgcttatattagtgaccggagggtgtat 29302211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 33604106 - 33604137
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  33604106 tttttgcttatattagtgaccggagggtgtat 33604137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 40262581 - 40262612
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  40262581 tttttgcttatattagtgaccggagggtgtat 40262612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 46829975 - 46830018
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    |||||||||||||||||||| ||| ||||||||||| |||||||    
T  46829975 ctaaaatgtagttttttgctaataatagtgaccggatggtgtat 46830018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 48022620 - 48022589
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  48022620 tttttgcttatattagtgaccggagggtgtat 48022589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 48022710 - 48022741
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  48022710 tttttgcttatattagtgaccggagggtgtat 48022741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 639824 - 639794
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  639824 tttttgcttatattagtgaccggagggtgta 639794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 639914 - 639944
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  639914 tttttgcttatattagtgaccggagggtgta 639944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 1036002 - 1036032
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  1036002 tttttgcttatattagtgaccggagggtgta 1036032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 8258058 - 8258088
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  8258058 tttttgcttatattagtgaccggagggtgta 8258088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 17490513 - 17490479
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtattat 49  Q
    |||||||||||||||||||||||||||| ||||||    
T  17490513 tttttgcttatattagtgaccggagggtctattat 17490479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 153
Target Start/End: Complemental strand, 18407557 - 18407466
Alignment:
Q  60 caaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttctt 153  Q
    |||||||  ||||| |||||||  |||| |||||||||  ||  |||||||||||||||| |||||||||||||||  ||| ||||| ||||||    
T  18407557 caaaaatctaaataattgataa--tttatgtagaaaaaaatactttttaaagtttcaatacattgaatgtatcattctcaaaacaaagtttctt 18407466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 27206796 - 27206754
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||| || |||||||||||||||||||| ||||||||||||    
T  27206796 ctaaaaagtggttttttgcttatattagtggccggagggtgta 27206754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 52183616 - 52183574
Alignment:
Q  1 acctaaaatgtagtttttt-gcttatattagtgaccggagggt 42  Q
    |||||||||||| |||||| |||||||||||||||||||||||    
T  52183616 acctaaaatgtaatttttttgcttatattagtgaccggagggt 52183574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14214630 - 14214675
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    |||||||| |||  |||||||||||| |||||||||||||||||||    
T  14214630 acctaaaaagtaagtttttgcttataatagtgaccggagggtgtat 14214675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 15647299 - 15647258
Alignment:
Q  60 caaaaatgaaaatagttgataaattttaagtagaaaaagtta 101  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  15647299 caaaaatggaaataatttataaattttaagtagaaaaagtta 15647258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31130795 - 31130840
Alignment:
Q  1 acctaaaatgtagtttt-ttgcttatattagtgaccggagggtgta 45  Q
    ||||||||||||||||| |||||||||||||| | |||||||||||    
T  31130795 acctaaaatgtagtttttttgcttatattagtaatcggagggtgta 31130840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8338776 - 8338824
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtattat 49  Q
    |||||||||||| | |||| ||||||||| ||| |||||||||||||||    
T  8338776 acctaaaatgtaatcttttacttatattaatgatcggagggtgtattat 8338824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 10832095 - 10832135
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggaggg 41  Q
    ||||||||||||| |||||| ||||| ||||||||||||||    
T  10832095 acctaaaatgtagatttttgtttataatagtgaccggaggg 10832135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 14214575 - 14214543
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtatt 47  Q
    |||||||||||| ||||||||||||||||||||    
T  14214575 tttttgcttataatagtgaccggagggtgtatt 14214543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #60
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 44698119 - 44698067
Alignment:
Q  75 ttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaat 127  Q
    ||||||||||||| || ||||||||||  |||||| |||||||||| ||||||    
T  44698119 ttgataaattttatgttgaaaaagttactttttaatgtttcaatatgttgaat 44698067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #61
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 52923424 - 52923468
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||||| |||| |||||||||||| |||||||| |||||||||    
T  52923424 acctaaaaagtagatttttgcttataatagtgacctgagggtgta 52923468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 54)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 23828904 - 23829002
Alignment:
Q  70 aatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtcttcttaa 168  Q
    |||||||||||||| |||||||||||| ||||  || |||| |||||||| |||||||| |||||||  ||||||||| ||||||| ||||||||||||    
T  23828904 aatagttgataaatgttaagtagaaaatgttactttctaaaatttcaatacattgaatgcatcatttttaagacaaaacttcttctttagtcttcttaa 23829002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 69 - 167
Target Start/End: Original strand, 38912906 - 38913004
Alignment:
Q  69 aaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtcttctta 167  Q
    ||||| |||||||||||||| ||||||||||| | |||||||||||||||  |||||||| | |||||||||||||| |||| |||| || ||||||||    
T  38912906 aaataattgataaattttaaatagaaaaagttgtattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttattctttaatcttctta 38913004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 5909182 - 5909067
Alignment:
Q  60 caaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctag 159  Q
    ||||||| |||||| ||||||| ||||| ||  |||||||||| ||| ||||||||||   |||||||| |||| |||||||||||| |||||||| |||    
T  5909182 caaaaataaaaataattgataatttttatgttaaaaaagttatttttcaaagtttcaaggcattgaatgcatcacttccaagacaaagtttcttctttag 5909083  T
Q  160 tcttcttaataagtgt 175  Q
     |||||||| ||||||    
T  5909082 acttcttaacaagtgt 5909067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 25874360 - 25874459
Alignment:
Q  69 aaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtcttcttaa 168  Q
    ||||| |||||||||||||||||||| | ||||  ||||||||||||||||||||||||| || |||| |||  ||||||||||||| | || |||||||    
T  25874360 aaataattgataaattttaagtagaacatgttacattttaaagtttcaatatattgaatgcattattttcaaatcaaaatttcttctttggttttcttaa 25874459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 10414978 - 10414933
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  10414978 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 10414933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 61 - 178
Target Start/End: Original strand, 21275621 - 21275738
Alignment:
Q  61 aaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagt 160  Q
    ||||||||||||| |||||| |||||||||||||||||||   ||||||| ||| |||  |||||||| | | |||| |||||||| |||||||| ||      
T  21275621 aaaaatgaaaataattgatatattttaagtagaaaaagttgctttttaaaattttaatgcattgaatgcaccttttctaagacaaactttcttctttaag 21275720  T
Q  161 cttcttaataagtgttct 178  Q
    |||||||| |||||||||    
T  21275721 cttcttaagaagtgttct 21275738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 34275230 - 34275181
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtattatt 50  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34275230 acctaaaatgtagttttttgcttatattagtgaccggaggatgtattatt 34275181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 34963375 - 34963467
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaattt 150  Q
    |||||||||||||||| ||||||||||||||||||||||||| |  ||| |||||||  ||  |||||||| | ||||||||||| |||||||    
T  34963375 tacaaaaatgaaaataattgataaattttaagtagaaaaagtcacttttcaaagttttcatgcattgaatgcaccatttccaagataaaattt 34963467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 168
Target Start/End: Original strand, 7728582 - 7728692
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctct 157  Q
    ||||||||| |||||| |||||||||||||| || |||||||||  ||||||| |||||||  ||| |||| | |||||||||||||||| || || | |    
T  7728582 tacaaaaataaaaataattgataaattttaattataaaaagttacattttaaaatttcaatgaattaaatgcaccatttccaagacaaaaattatttttt 7728681  T
Q  158 agtcttcttaa 168  Q
    | |||||||||    
T  7728682 aatcttcttaa 7728692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 24935931 - 24935885
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtatt 47  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  24935931 acctaaaatgtagatttttgcttatattagtgaccggagggtgtatt 24935885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4406118 - 4406073
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  4406118 acctaaaatgtagtttttttcttatattagtgaccggagggtgtat 4406073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8447756 - 8447712
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  8447756 acctaaaatatagttttttgcttatattagtgaccggagggtgta 8447712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28949376 - 28949420
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  28949376 acctagaatgtagttttttgcttatattagtgaccggagggtgta 28949420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 173
Target Start/End: Complemental strand, 40037827 - 40037716
Alignment:
Q  61 aaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagt 160  Q
    |||||| |||||| |||||||||||||| ||||||| ||  | |||||||||||||||  ||||||| ||||||||  |||| |||||||||| | ||||    
T  40037827 aaaaataaaaataattgataaattttaaatagaaaa-gtattattttaaagtttcaatgcattgaatatatcatttttaagataaaatttcttttttagt 40037729  T
Q  161 cttcttaataagt 173  Q
    |||  ||||||||    
T  40037728 cttactaataagt 40037716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 6455650 - 6455696
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtatt 47  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||    
T  6455650 acctaaaatgtagatttttgcttatattagtgatcggagggtgtatt 6455696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 41803823 - 41803868
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||    
T  41803823 acctaaaatatagttttttgcttatattagcgaccggagggtgtat 41803868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 34275294 - 34275338
Alignment:
Q  3 ctaaaatgtagtttt-ttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  34275294 ctaaaatgtagtttttttgcttatattagtgaccggagggtgtat 34275338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 16831346 - 16831275
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgt 129  Q
    |||||||||||||||| ||||||||||| || || |||||||||  ||||||||||| |||  |||||||||    
T  16831346 tacaaaaatgaaaataattgataaatttcaaataaaaaaagttactttttaaagttttaatgcattgaatgt 16831275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 38238887 - 38238930
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  38238887 ctaaaaagtagatttttgcttatattagtgaccggagggtgtat 38238930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 18662319 - 18662361
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagtt 100  Q
    |||||||||||||||  ||||||||||||||||||||||||||    
T  18662319 tacaaaaatgaaaatcattgataaattttaagtagaaaaagtt 18662361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 18662356 - 18662422
Alignment:
Q  108 aaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtcttcttaataagtg 174  Q
    |||||||||||| |||||||| ||||||| ||||||||||||| |||| ||  ||| ||||||||||    
T  18662356 aaagtttcaatacattgaatgcatcattttcaagacaaaatttattctttaaactttttaataagtg 18662422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 46683122 - 46683064
Alignment:
Q  60 caaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaat 118  Q
    |||||||| ||||| ||| ||||||||||||| |||||||||  |||||||||||||||    
T  46683122 caaaaatggaaataattggtaaattttaagtataaaaagttacattttaaagtttcaat 46683064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 10415043 - 10415084
Alignment:
Q  4 taaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||| ||||||||||||||||||||||| |||||||||||    
T  10415043 taaaatatagttttttgcttatattagtgatcggagggtgta 10415084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 151
Target Start/End: Complemental strand, 46096840 - 46096747
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttc 151  Q
    |||||||||||||||| |||||||||||||| || ||||| |||  ||||||| |||||||  | |||||| | |||||| |||| || |||||    
T  46096840 tacaaaaatgaaaataattgataaattttaaataaaaaaaattactttttaaaatttcaatgcactgaatgcaccatttctaagataatatttc 46096747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36547626 - 36547582
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||| | |||||||||||||| ||||||||||||||||||    
T  36547626 acctaaaatatggttttttgcttataatagtgaccggagggtgta 36547582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 38663742 - 38663682
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaat 118  Q
    |||||||||  ||||| |||||||||||||| || |||||||||  |||||||||||||||    
T  38663742 tacaaaaatagaaataattgataaattttaaatataaaaagttactttttaaagtttcaat 38663682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 2297356 - 2297325
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  2297356 tttttgcttatattagtgaccggagggtgtat 2297325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 2360474 - 2360443
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  2360474 tttttgcttatattagtgaccggagggtgtat 2360443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 363
Target Start/End: Complemental strand, 4609654 - 4609583
Alignment:
Q  292 ttaccatattgggcataggataagagtttcttttctgtttttatgctctgttcaggcaactattgtaaatat 363  Q
    ||||||||||||||||||| |||||||| |||||| |||| | |||| |||  |||| ||| ||||||||||    
T  4609654 ttaccatattgggcataggctaagagttacttttccgtttatttgctttgtataggcgactgttgtaaatat 4609583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 8595262 - 8595293
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  8595262 tttttgcttatattagtgaccggagggtgtat 8595293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 10422923 - 10422954
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  10422923 tttttgcttatattagtgaccggagggtgtat 10422954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 16777916 - 16777885
Alignment:
Q  16 ttttgcttatattagtgaccggagggtgtatt 47  Q
    ||||||||||||||||||||||||||||||||    
T  16777916 ttttgcttatattagtgaccggagggtgtatt 16777885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 25245246 - 25245289
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||| | |||||||||||| |||||||||||||||||||    
T  25245246 ctaaaatgttgatttttgcttataatagtgaccggagggtgtat 25245289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 34703558 - 34703589
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  34703558 tttttgcttatattagtgaccggagggtgtat 34703589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 38238808 - 38238777
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  38238808 tttttgcttatattagtgaccggagggtgtat 38238777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 41872154 - 41872189
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccgga 38  Q
    ||||||||||| ||||||||||||||||||||||||    
T  41872154 ctaaaatgtagatttttgcttatattagtgaccgga 41872189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 43103097 - 43103062
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtattatt 50  Q
    |||||||||||| |||||||||||||||||||||||    
T  43103097 tttttgcttataatagtgaccggagggtgtattatt 43103062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 8447820 - 8447862
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||||| |||||||||||| ||||||||| ||||||||    
T  8447820 ctaaaatgtagatttttgcttataatagtgaccgaagggtgta 8447862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 8571497 - 8571527
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  8571497 tttttgcttatattagtgaccggagggtgta 8571527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 25079244 - 25079202
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||| |||| |||||||||||||||||||||||||| ||||    
T  25079244 ctaaaaagtagatttttgcttatattagtgaccggaggatgta 25079202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 42589694 - 42589756
Alignment:
Q  60 caaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatat 122  Q
    |||||||||||||  ||| ||||||||| ||| |||||||| | |||| ||||||||||||||    
T  42589694 caaaaatgaaaattattggtaaattttatgtaaaaaaagttgtttttttaagtttcaatatat 42589756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 46648743 - 46648773
Alignment:
Q  16 ttttgcttatattagtgaccggagggtgtat 46  Q
    |||||||||||||||||||||||||||||||    
T  46648743 ttttgcttatattagtgaccggagggtgtat 46648773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 101
Target Start/End: Original strand, 49111259 - 49111293
Alignment:
Q  67 gaaaatagttgataaattttaagtagaaaaagtta 101  Q
    ||||||||||||||||||||| |||||||||||||    
T  49111259 gaaaatagttgataaattttaggtagaaaaagtta 49111293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 4406183 - 4406224
Alignment:
Q  4 taaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||| ||||||||||||||||||| ||| |||||||||||    
T  4406183 taaaatatagttttttgcttatattaatgatcggagggtgta 4406224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 8566261 - 8566310
Alignment:
Q  69 aaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaat 118  Q
    ||||| ||||||||||||| ||||||||| | || |||||||||||||||    
T  8566261 aaataattgataaattttatgtagaaaaattaattttttaaagtttcaat 8566310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 8571406 - 8571377
Alignment:
Q  16 ttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||||||||||||||||||||||||    
T  8571406 ttttgcttatattagtgaccggagggtgta 8571377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3967744 - 3967704
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggaggg 41  Q
    |||||||| ||||||||||||||||| |||||| |||||||    
T  3967744 acctaaaaagtagttttttgcttataatagtgatcggaggg 3967704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3967806 - 3967842
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccgg 37  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  3967806 acctaaaaagtagttttttgcttataatagtgaccgg 3967842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 15051198 - 15051230
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtatt 47  Q
    |||||||||||||| ||||||||||||||||||    
T  15051198 tttttgcttatatttgtgaccggagggtgtatt 15051230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 25079310 - 25079354
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtatt 47  Q
    |||||| |||| |||||| ||||||||||||||||||| ||||||    
T  25079310 ctaaaaagtagatttttgtttatattagtgaccggaggatgtatt 25079354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 26824931 - 26824899
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtatt 47  Q
    |||||||||||| ||||||||||||||||||||    
T  26824931 tttttgcttatactagtgaccggagggtgtatt 26824899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 26980244 - 26980308
Alignment:
Q  104 ttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtcttcttaa 168  Q
    |||| |||||| ||| ||||||||| |||| | ||||||||||||||||||| |||  |||||||    
T  26980244 ttttcaagttttaatgtattgaatgcatcaatcccaagacaaaatttcttctttaggattcttaa 26980308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 36595419 - 36595367
Alignment:
Q  122 ttgaatgtatcatttccaagacaaaatttcttctctagtcttcttaataagtg 174  Q
    ||||||| |||||||||||||||||||||| ||| ||| ||||| || |||||    
T  36595419 ttgaatgcatcatttccaagacaaaatttcctctttagacttctaaagaagtg 36595367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #54
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 46152239 - 46152336
Alignment:
Q  69 aaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtcttcttaa 168  Q
    ||||| |||||||| |||| ||||||||| | ||  ||| || ||||||| | ||||||| |||| | |||||| |||||||||||| ||| ||||||||    
T  46152239 aaataattgataaactttatgtagaaaaattcat--tttcaaatttcaatgtgttgaatgcatcaatcccaagaaaaaatttcttctttaggcttcttaa 46152336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 163
Target Start/End: Original strand, 79968 - 80073
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctct 157  Q
    |||| |||| |||||  ||||| ||||||| |||||||||||||| |||||||||||||||| ||||| || | ||||||||| |||| ||||||||| |    
T  79968 tacataaataaaaattattgatgaattttatgtagaaaaagttatattttaaagtttcaatacattgagtgcaccatttccaatacaacatttcttcttt 80067  T
Q  158 agtctt 163  Q
    ||||||    
T  80068 agtctt 80073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 168
Target Start/End: Complemental strand, 44814165 - 44814057
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctct 157  Q
    |||||||||  ||||| |||||||||||||||||||||  |||   ||||||||||||||| |  |||||| | ||||| |||||||||||||||||| |    
T  44814165 tacaaaaatagaaataattgataaattttaagtagaaagggttgcattttaaagtttcaatgt--tgaatgcaccattttcaagacaaaatttcttcttt 44814068  T
Q  158 agtcttcttaa 168  Q
    |||||||||||    
T  44814067 agtcttcttaa 44814057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 31505077 - 31505031
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtatt 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31505077 acctaaaatgtagttttttgcttatattagtgaccggagggtgtatt 31505031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31505139 - 31505184
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31505139 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 31505184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 168
Target Start/End: Complemental strand, 42631776 - 42631687
Alignment:
Q  79 taaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtcttcttaa 168  Q
    ||||||||||||||||||| ||| |||||||||||| |||  |||||||| | ||||| ||||||||||||| |||| ||| ||||||||    
T  42631776 taaattttaagtagaaaaaattaccttttaaagttttaatgcattgaatgcaccattttcaagacaaaatttattctttagacttcttaa 42631687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 31810437 - 31810481
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtatt 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  31810437 ctaaaatgtagttttttgcttatattagtgaccggagggtgtatt 31810481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 13496474 - 13496427
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtatta 48  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||    
T  13496474 acctagaatgtagttttttgcttatattagtgaccggatggtgtatta 13496427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 40098797 - 40098750
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtattatt 50  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||    
T  40098797 ctaaaaagtagatttttgcttatattagtgaccggagggtgtattatt 40098750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 58 - 168
Target Start/End: Original strand, 34496889 - 34496999
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctct 157  Q
    |||||||||| ||||| ||| ||||||||||||| ||||  |||  || ||||||||||||  |||||||  || |||| |||||||||||||||||| |    
T  34496889 tacaaaaatggaaataattggtaaattttaagtataaaatattactttataaagtttcaatgcattgaatacataatttacaagacaaaatttcttcttt 34496988  T
Q  158 agtcttcttaa 168  Q
    |  ||||||||    
T  34496989 aaacttcttaa 34496999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24053636 - 24053592
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  24053636 acctaaaatataattttttgcttatattagtgaccggagggtgta 24053592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 1744268 - 1744227
Alignment:
Q  4 taaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||| ||| |||||||||||||||||||||||||||||||    
T  1744268 taaaatatagatttttgcttatattagtgaccggagggtgta 1744227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 10934639 - 10934598
Alignment:
Q  4 taaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  10934639 taaaatatagttttttgcttataatagtgaccggagggtgta 10934598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 10467176 - 10467136
Alignment:
Q  236 gaggcaagagacaagacagaaactgaaatttttgttcctca 276  Q
    |||||||||||||||||| ||||||| ||||||||||||||    
T  10467176 gaggcaagagacaagacaaaaactgatatttttgttcctca 10467136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 31810371 - 31810328
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    |||||||||||  ||||||||||| |||||||||||||||||||    
T  31810371 ctaaaatgtagcattttgcttataatagtgaccggagggtgtat 31810328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 40098875 - 40098906
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  40098875 tttttgcttatattagtgaccggagggtgtat 40098906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 41061298 - 41061227
Alignment:
Q  79 taaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaattt 150  Q
    |||| ||||||||||||| ||||| ||||||||||| ||||| || ||||||  ||||  ||||||||||||    
T  41061298 taaaatttaagtagaaaaggttattttttaaagttttaatatgttaaatgtacaatttttaagacaaaattt 41061227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 1739680 - 1739710
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  1739680 tttttgcttatattagtgaccggagggtgta 1739710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 9056136 - 9056166
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  9056136 tttttgcttatattagtgaccggagggtgta 9056166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 10934706 - 10934748
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||| | |||||||||||| ||||||||||||||||||    
T  10934706 ctaaaatgttgatttttgcttataatagtgaccggagggtgta 10934748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 13290070 - 13290032
Alignment:
Q  5 aaaatgtagttttttgcttatattagtgaccggagggtg 43  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  13290070 aaaatgtaattttttgcttataatagtgaccggagggtg 13290032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 13496539 - 13496581
Alignment:
Q  4 taaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    |||||||||  |||||||||||| |||||||||||||||||||    
T  13496539 taaaatgtaaatttttgcttataatagtgaccggagggtgtat 13496581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 14381263 - 14381233
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  14381263 tttttgcttatattagtgaccggagggtgta 14381233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 27518418 - 27518460
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||||| |||||| ||||| ||||||||||||||||||    
T  27518418 ctaaaatgtagatttttgtttataatagtgaccggagggtgta 27518460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 41387865 - 41387907
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||| |||||||||||||||| ||||||||||| ||||||    
T  41387865 ctaaaatatagttttttgcttataatagtgaccggatggtgta 41387907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 14955259 - 14955315
Alignment:
Q  91 agaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaa 147  Q
    |||||||||||  ||||||| ||||||| | ||||||| ||||||||||||| ||||    
T  14955259 agaaaaagttactttttaaactttcaatgtgttgaatgcatcatttccaagataaaa 14955315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 29451761 - 29451725
Alignment:
Q  10 gtagttttttgcttatattagtgaccggagggtgtat 46  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  29451761 gtagattttttcttatattagtgaccggagggtgtat 29451725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 33574890 - 33574930
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtg 43  Q
    ||||||||| | |||||| ||||||||||||||||||||||    
T  33574890 ctaaaatgtggatttttgtttatattagtgaccggagggtg 33574930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6560696 - 6560650
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtatt 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  6560696 acctaaaatgtagttttttgcttatattagtgaccggagggtgtatt 6560650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31398265 - 31398221
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  31398265 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 31398221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 30456799 - 30456869
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatg 128  Q
    |||||||||| ||||| |||||||||||| |||| |||||||||  ||||||| |||||||||||||||||    
T  30456799 tacaaaaatggaaataattgataaatttttagtataaaaagttactttttaaaatttcaatatattgaatg 30456869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 174
Target Start/End: Complemental strand, 33605173 - 33605057
Alignment:
Q  58 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctct 157  Q
    ||||||||| | |||| ||||||||||| |||| ||||||||||| ||||||||||| |||   || ||||||  | ||  ||||||||| ||||||| |    
T  33605173 tacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttttaatgatttcaatgtacaaattttaagacaaaaattcttcttt 33605074  T
Q  158 agtcttcttaataagtg 174  Q
    ||||||||||| |||||    
T  33605073 agtcttcttaacaagtg 33605057  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 8146052 - 8146095
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  8146052 ctaaaatgtaattttttgcttatattagtgaccggagggtgtat 8146095  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 6560760 - 6560802
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  6560760 ctaaaatgtaattttttgcttatattagtgaccggagggtgta 6560802  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18097161 - 18097207
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtatt 47  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  18097161 acctagaatgtagttttttgtttatattagtgaccggagggtgtatt 18097207  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8145988 - 8145943
Alignment:
Q  1 acctaaaatgtagtttttt-gcttatattagtgaccggagggtgta 45  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  8145988 acctaaaatgtagtttttttgcttatattagtgaccggagggtgta 8145943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 9200923 - 9200878
Alignment:
Q  290 gtttaccatattgggcataggataagagtttcttttctgtttttat 335  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||    
T  9200923 gtttaccatattggacataggctaagagtttcttttctgtttttat 9200878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2988838 - 2988794
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||| |||||||||||||||| |||||||||||||||    
T  2988838 acctaaaatgtaattttttgcttatattaatgaccggagggtgta 2988794  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 17773604 - 17773648
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtatt 47  Q
    |||||| |||| |||||||||||||||||||||||||||||||||    
T  17773604 ctaaaaagtagatttttgcttatattagtgaccggagggtgtatt 17773648  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 3686889 - 3686811
Alignment:
Q  69 aaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaa 147  Q
    ||||| || |||| ||||| || ||||| | ||| ||||||| ||||||||| ||||||| ||||||||||||||||||    
T  3686889 aaataatttataagttttatgtcgaaaatgctattttttaaactttcaatatcttgaatgcatcatttccaagacaaaa 3686811  T

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Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 147
Target Start/End: Complemental strand, 10228414 - 10228329
Alignment:
Q  61 aaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaa 147  Q
    ||||||||||||| || |||||||||  ||||||||| ||| |||||||| ||| ||| | ||||||| ||||||||||||| ||||    
T  10228414 aaaaatgaaaataatttataaattttttgtagaaaaaatta-cttttaaacttttaatgtcttgaatgcatcatttccaagaaaaaa 10228329  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 30397762 - 30397717
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtatta 48  Q
    ||||||||| | |||||| |||||||||||||||||||||||||||    
T  30397762 ctaaaatgtggatttttgtttatattagtgaccggagggtgtatta 30397717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 8082495 - 8082579
Alignment:
Q  91 agaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctctagtcttcttaataagtgt 175  Q
    ||||||| |||  |||||||||||||||  ||| |||| | ||||| |||||||||||||||| | ||| |||||||| ||||||    
T  8082495 agaaaaaattactttttaaagtttcaatgcatttaatgcaccattttcaagacaaaatttcttatttagacttcttaagaagtgt 8082579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 21506488 - 21506456
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtatt 47  Q
    |||||||||||||||||||||||||||||||||    
T  21506488 tttttgcttatattagtgaccggagggtgtatt 21506456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 31536336 - 31536305
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  31536336 tttttgcttatattagtgaccggagggtgtat 31536305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 14310636 - 14310666
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  14310636 tttttgcttatattagtgaccggagggtgta 14310666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 28555050 - 28555092
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||||| |||||||||||| |||||||| |||||||||    
T  28555050 ctaaaatgtagatttttgcttataatagtgaccagagggtgta 28555092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 30397839 - 30397869
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  30397839 tttttgcttatattagtgaccggagggtgta 30397869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31996600 - 31996646
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtatt 47  Q
    ||||||||||| | |||||||||||| |||||||||||| |||||||    
T  31996600 acctaaaatgttgatttttgcttataatagtgaccggagagtgtatt 31996646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 14310557 - 14310516
Alignment:
Q  4 taaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||| ||||| ||||||||| |||||||||||||||    
T  14310557 taaaatgtagatttttacttatattaatgaccggagggtgta 14310516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16199159 - 16199122
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccgga 38  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  16199159 acctaaaatgtagatttttgcttataatagtgaccgga 16199122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 6248 - 6206
Alignment:
Q  5 aaaatgtagttttttgcttatattagtgaccggagggtgtatt 47  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  6248 aaaatgtaattttttgcttatattagtgactggagggtgtatt 6206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 6314 - 6359
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    |||||||||||| |||||| ||||||||| |||| |||||||||||    
T  6314 acctaaaatgtaattttttacttatattaatgactggagggtgtat 6359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 120169 - 120135
Alignment:
Q  16 ttttgcttatattagtgaccggagggtgtattatt 50  Q
    |||||||||||||||||||||||||||||||||||    
T  120169 ttttgcttatattagtgaccggagggtgtattatt 120135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 120260 - 120291
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtat 46  Q
    ||||||||||||||||||||||||||||||||    
T  120260 tttttgcttatattagtgaccggagggtgtat 120291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4413 - 4369
Alignment:
Q  1 acctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||| | |||||||||||||| ||||||||||||||||||    
T  4413 acctaaaatatggttttttgcttataatagtgaccggagggtgta 4369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 61188 - 61156
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgtatt 47  Q
    |||||||||||||||||||||||||||||||||    
T  61188 tttttgcttatattagtgaccggagggtgtatt 61156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 61265 - 61307
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    ||||||||| | |||||| ||||||||||||||||||||||||    
T  61265 ctaaaatgtggatttttgtttatattagtgaccggagggtgta 61307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 54425 - 54382
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgtat 46  Q
    |||||| |||| ||||||||||||||||| ||||||||||||||    
T  54425 ctaaaaagtagatttttgcttatattagtaaccggagggtgtat 54382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 3975 - 3945
Alignment:
Q  15 tttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||||||||||||||||||||||||    
T  3975 tttttgcttatattagtgaccggagggtgta 3945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 19123 - 19213
Alignment:
Q  61 aaaaatgaaaatagttgataaattttaagtagaaaaagttatcttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttc 151  Q
    ||||||||||||||||||| | ||||| |||||| ||||||  | ||||||||||||| |  ||| | ||| ||| |||||| ||||||||    
T  19123 aaaaatgaaaatagttgatgagttttatgtagaacaagttacttgttaaagtttcaatgtgctgactatattattcccaagataaaatttc 19213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 17191 - 17161
Alignment:
Q  16 ttttgcttatattagtgaccggagggtgtat 46  Q
    |||||||||||||||||||||||||||||||    
T  17191 ttttgcttatattagtgaccggagggtgtat 17161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 139399 - 139441
Alignment:
Q  3 ctaaaatgtagttttttgcttatattagtgaccggagggtgta 45  Q
    |||||||||| |||||||||||||| |||||| ||||||||||    
T  139399 ctaaaatgtaattttttgcttatatgagtgacgggagggtgta 139441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 1627 - 1667
Alignment:
Q  236 gaggcaagagacaagacagaaactgaaatttttgttcctca 276  Q
    |||||||| ||||||||| |||||||||||||||| |||||    
T  1627 gaggcaagggacaagacaaaaactgaaatttttgtccctca 1667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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