View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6612_low_7 (Length: 320)
Name: NF6612_low_7
Description: NF6612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6612_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 31 - 304
Target Start/End: Original strand, 40960267 - 40960540
Alignment:
| Q |
31 |
tgctaatcatgtttagtataactgtgactctttcaggttataatcctcctcctgcttctccaaaggcttgatgcaaaaatttgggctgggcgcatgcaac |
130 |
Q |
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| T |
40960267 |
tgctaatcatgtttagtataactgtgactctttcaggttataatcctcctcctacttctccaaaggcttgatgcaaaaatttgggctgggcgcatgcaac |
40960366 |
T |
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| Q |
131 |
ttatatacatgaataaaataaaataaaacatgacatgtattctaaaagaaaagcatgatgtacatgcgtcttcttaattactgatttatgctctctctcc |
230 |
Q |
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| T |
40960367 |
ttatatacatgaataaaataaaataaaacatgacatgtattctaaaagaaaagcatgatgtacatgcgtcttcttaattactgatttatgctctctctcc |
40960466 |
T |
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| Q |
231 |
ctttgatatgtatttttatttttatgagttcagtgatgtaatctcagtgctatgaaatagatttgataataata |
304 |
Q |
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| T |
40960467 |
ctttgatatgtatttttatttttatgagttcaatgatgtaatctcagtgctatgaaatagatttgataataata |
40960540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 40953722 - 40953798
Alignment:
| Q |
74 |
tcctcctcctgcttctccaaaggcttgatgcaaaaatttgggctgggcgcatgcaacttatatacatgaataaaataaaa |
153 |
Q |
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| T |
40953722 |
tcctcatcctccttctctaaaggcttgatgcaaaaaattggg---ggcgcatggaacttatatatatgaataaaataaaa |
40953798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 40954224 - 40954279
Alignment:
| Q |
54 |
gtgactctttcaggttataatcctcctcctgcttctccaaaggcttgatgcaaaaa |
109 |
Q |
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| T |
40954224 |
gtgattctttcaggttataatcctcctcctgcttctccgaagactttatgcaaaaa |
40954279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 282
Target Start/End: Original strand, 40953827 - 40953862
Alignment:
| Q |
247 |
tatttttatgagttcagtgatgtaatctcagtgcta |
282 |
Q |
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| T |
40953827 |
tatttttatgagttcaatgatgtaatctcagtgcta |
40953862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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