View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6612_low_9 (Length: 288)

Name: NF6612_low_9
Description: NF6612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6612_low_9
NF6612_low_9
[»] scaffold0236 (1 HSPs)
scaffold0236 (75-272)||(20541-20738)
[»] chr7 (18 HSPs)
chr7 (1-73)||(45000618-45000690)
chr7 (1-69)||(1706854-1706922)
chr7 (1-73)||(38238835-38238907)
chr7 (1-58)||(22106718-22106775)
chr7 (1-58)||(40529576-40529633)
chr7 (1-73)||(29498834-29498906)
chr7 (1-47)||(24936576-24936622)
chr7 (17-70)||(18234412-18234465)
chr7 (1-58)||(22281475-22281532)
chr7 (1-58)||(25079258-25079315)
chr7 (1-73)||(27554548-27554620)
chr7 (1-73)||(34703460-34703532)
chr7 (1-73)||(40416923-40416995)
chr7 (1-58)||(716266-716323)
chr7 (1-42)||(4406468-4406509)
chr7 (28-73)||(22106684-22106729)
chr7 (28-73)||(40529622-40529667)
chr7 (18-58)||(46943976-46944016)
[»] chr5 (15 HSPs)
chr5 (1-73)||(37944653-37944725)
chr5 (1-73)||(3851414-3851486)
chr5 (1-73)||(11262379-11262451)
chr5 (1-69)||(13311225-13311293)
chr5 (1-73)||(15712138-15712210)
chr5 (1-73)||(19531318-19531390)
chr5 (1-73)||(42013873-42013945)
chr5 (1-73)||(43446876-43446948)
chr5 (1-58)||(26300162-26300219)
chr5 (12-73)||(38835542-38835603)
chr5 (8-47)||(8961277-8961316)
chr5 (1-47)||(21945423-21945469)
chr5 (13-58)||(37870080-37870125)
chr5 (1-73)||(23914892-23914964)
chr5 (1-47)||(13157384-13157430)
[»] chr2 (14 HSPs)
chr2 (1-73)||(43426679-43426751)
chr2 (8-73)||(30902290-30902355)
chr2 (8-73)||(38594402-38594467)
chr2 (8-73)||(38597998-38598063)
chr2 (1-73)||(22373627-22373699)
chr2 (1-69)||(38618149-38618217)
chr2 (8-58)||(3887891-3887941)
chr2 (1-47)||(5574153-5574199)
chr2 (11-73)||(25278191-25278253)
chr2 (1-58)||(34248466-34248523)
chr2 (15-58)||(1981049-1981092)
chr2 (16-57)||(6566981-6567022)
chr2 (8-72)||(3714271-3714335)
chr2 (10-58)||(7837117-7837165)
[»] chr1 (18 HSPs)
chr1 (1-58)||(40262500-40262557)
chr1 (1-73)||(35367529-35367601)
chr1 (1-73)||(3384240-3384312)
chr1 (1-73)||(8257960-8258032)
chr1 (1-73)||(14418108-14418180)
chr1 (1-58)||(31008310-31008367)
chr1 (1-73)||(37734790-37734862)
chr1 (8-70)||(15439882-15439944)
chr1 (1-58)||(2349788-2349845)
chr1 (1-58)||(6065493-6065550)
chr1 (8-73)||(34658403-34658468)
chr1 (1-73)||(639850-639922)
chr1 (1-57)||(27206810-27206866)
chr1 (1-73)||(48022646-48022718)
chr1 (8-47)||(5856400-5856439)
chr1 (8-58)||(4602676-4602726)
chr1 (1-47)||(33604034-33604080)
chr1 (1-58)||(2352927-2352984)
[»] chr8 (13 HSPs)
chr8 (1-73)||(9056038-9056110)
chr8 (8-69)||(13211297-13211358)
chr8 (1-73)||(40098777-40098849)
chr8 (1-58)||(7377605-7377662)
chr8 (1-58)||(14381289-14381346)
chr8 (8-69)||(37716132-37716193)
chr8 (8-55)||(29451762-29451809)
chr8 (1-47)||(11692098-11692144)
chr8 (1-47)||(13228913-13228959)
chr8 (1-46)||(26014620-26014665)
chr8 (13-69)||(15285674-15285730)
chr8 (13-69)||(15466043-15466099)
chr8 (19-73)||(1739634-1739688)
[»] chr4 (7 HSPs)
chr4 (1-72)||(5418533-5418604)
chr4 (8-73)||(13689553-13689618)
chr4 (1-72)||(24941162-24941233)
chr4 (1-58)||(10031572-10031629)
chr4 (8-73)||(38539495-38539560)
chr4 (18-73)||(29223959-29224014)
chr4 (1-73)||(52817584-52817656)
[»] chr3 (20 HSPs)
chr3 (1-58)||(29512163-29512220)
chr3 (1-70)||(38455216-38455285)
chr3 (8-73)||(51239301-51239366)
chr3 (1-58)||(52315441-52315498)
chr3 (1-58)||(52931692-52931749)
chr3 (1-73)||(36362655-36362727)
chr3 (1-73)||(52168300-52168372)
chr3 (1-47)||(21403939-21403985)
chr3 (1-47)||(41349703-41349749)
chr3 (8-58)||(51617363-51617413)
chr3 (8-73)||(29565126-29565191)
chr3 (16-73)||(22173812-22173869)
chr3 (1-70)||(42449156-42449225)
chr3 (3-47)||(17552520-17552564)
chr3 (1-69)||(32759017-32759085)
chr3 (13-69)||(37492402-37492458)
chr3 (1-47)||(29720119-29720165)
chr3 (1-47)||(50260984-50261030)
chr3 (1-58)||(22099811-22099868)
chr3 (1-73)||(7981196-7981268)
[»] scaffold0536 (1 HSPs)
scaffold0536 (1-73)||(4001-4073)
[»] chr6 (7 HSPs)
chr6 (1-73)||(17773552-17773624)
chr6 (1-58)||(21506495-21506552)
chr6 (1-47)||(17268064-17268110)
chr6 (1-55)||(30460648-30460702)
chr6 (16-73)||(21998105-21998162)
chr6 (8-73)||(28577659-28577724)
chr6 (1-58)||(30397776-30397832)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-73)||(120196-120268)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-73)||(246846-246918)
[»] scaffold0047 (1 HSPs)
scaffold0047 (1-58)||(61195-61251)
[»] scaffold0039 (1 HSPs)
scaffold0039 (1-73)||(54405-54477)
[»] scaffold0027 (1 HSPs)
scaffold0027 (10-58)||(17198-17246)


Alignment Details
Target: scaffold0236 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 75 - 272
Target Start/End: Original strand, 20541 - 20738
Alignment:
Q  75 agcaataccctttattttttgtagcaaatcaaacgggtgaataatatttagggttgtgaggtgcaacatcacacactctggtaacaacaaaaacacgcac 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||  |||||||||||||||||||    
T  20541 agcaataccctttattttttgtagcaaatcaaacgggtgaataatatttggggttgtgaggtgcaacctcacacactctactaacaacaaaaacacgcac 20640  T
Q  175 tttcatgcattcttctccctctatttataacaacacttttagttcacttcttcacatcaccttcaagtaacaacagtatcacatccatggcatccttc 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20641 tttcatgcattcttctccctctatttataacaacacttttagttcatttcttcacatcaccttcaagtaacaacagtatcacatccatggcatccttc 20738  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 45000690 - 45000618
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||  |||||| || ||| ||||||||||    
T  45000690 atgatgtatgtggtctttattatatgtcacacacatcattaattgaatgtatctagaaaatagatttttgctt 45000618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 1706922 - 1706854
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaattttt 69  Q
    |||||| || ||||||||||||||||||||| |||||||||||||||  ||||||||| ||||||||||    
T  1706922 atgatgtatatggtctttattatatgtcacatacatcattaattgaatgtatctaaaaaataaattttt 1706854  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 38238835 - 38238907
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||  |||||||||  || ||||||||||    
T  38238835 atgatgtatgtggtctttattatatgtcacatacatcattaattgaatgtatctaaaaagtagatttttgctt 38238907  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 22106718 - 22106775
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||  |||||||||    
T  22106718 atgatgtatgtggtctttattatatgtcacatacatcattaattgaatgtatctaaaa 22106775  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 40529633 - 40529576
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||  |||||||||    
T  40529633 atgatgtatgtggtctttattatatgtcacatacatcattaattgaatgtatctaaaa 40529576  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 29498834 - 29498906
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| |||||||||||||||||||||||| |||| ||||||| ||  ||||||||| ||  ||||||||||    
T  29498834 atgatgtatgtggtctttattatatgtcacatacataattaattaaatgtatctaaaaaatggatttttgctt 29498906  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 24936622 - 24936576
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaa 47  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||||    
T  24936622 atgatgtatgtggtctttattatatgtcacagacataattaattgaa 24936576  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 18234412 - 18234465
Alignment:
Q  17 ttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttg 70  Q
    ||||||||||||||| |||||||||||||||  |||||||||  ||||||||||    
T  18234412 ttattatatgtcacatacatcattaattgaatgtatctaaaaattaaatttttg 18234465  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 22281532 - 22281475
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||| ||||  |||||||||||||||| | ||||||||||||||| ||||||||||    
T  22281532 atgatgaatgtactctttattatatgtcatatacatcattaattgaatatatctaaaa 22281475  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 25079258 - 25079315
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||| ||||| || ||||||||||||||| |||||||||||||||  |||||||||    
T  25079258 atgatgtatgtgatccttattatatgtcacatacatcattaattgaatgtatctaaaa 25079315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 27554548 - 27554620
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| ||||| |||||||||||| ||||| |||||||||||||||  ||| | |||  |||||||||||||    
T  27554548 atgatgtatgtgatctttattatatatcacatacatcattaattgaatgtattttaaaagtaaatttttgctt 27554620  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 34703532 - 34703460
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| || |||||||||||||||||||||  ||||||||||||||  ||||||||   | |||||||||||    
T  34703532 atgatgtatatggtctttattatatgtcacatgcatcattaattgaatgtatctaaattgtgaatttttgctt 34703460  T

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Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 40416995 - 40416923
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| || |||||||||||||||||||||  ||||||||||||||  ||||||||   | |||||||||||    
T  40416995 atgatgtatatggtctttattatatgtcacatgcatcattaattgaatgtatctaaattgtgaatttttgctt 40416923  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 716323 - 716266
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||| ||||| |||||||| ||||||| | |||||||||||||||  |||||||||    
T  716323 atgatgtatgtgatctttattctatgtcatatacatcattaattgaatgtatctaaaa 716266  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4406468 - 4406509
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaa 42  Q
    |||||| |||| ||||||||||||||||||| ||||||||||    
T  4406468 atgatgtatgttgtctttattatatgtcacatacatcattaa 4406509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 22106729 - 22106684
Alignment:
Q  28 cacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||| ||||||||||||||| |||||||||| ||| ||||||||||    
T  22106729 cacatacatcattaattgaatatatctaaaaaatagatttttgctt 22106684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 40529622 - 40529667
Alignment:
Q  28 cacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||| ||||||||||||||| |||||||||| ||| ||||||||||    
T  40529622 cacatacatcattaattgaatatatctaaaaaatagatttttgctt 40529667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 46944016 - 46943976
Alignment:
Q  18 tattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||||||||||| |||||||||||||||  |||||||||    
T  46944016 tattatatgtcacatacatcattaattgaatgtatctaaaa 46943976  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 37944653 - 37944725
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| ||||| |||||||||||||||||| |||||||||||||||  ||||||||| ||||||||||||||    
T  37944653 atgatgtatgtgatctttattatatgtcacatacatcattaattgaatgtatctaaaaaataaatttttgctt 37944725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 3851414 - 3851486
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| |||||||||||||||||||||||| |||||||||||| ||  ||||||||| || |||||||||||    
T  3851414 atgatgtatgtggtctttattatatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgctt 3851486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 11262379 - 11262451
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||  |||||| || || |||||||||||    
T  11262379 atgatgtatgtggtctttattatatgtcacatacatcattaattgaatgtatctacaaaatgaatttttgctt 11262451  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 13311225 - 13311293
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaattttt 69  Q
    |||||| |||||||||||||||||||| ||| |||||||||||||||  ||||||||||||| ||||||    
T  13311225 atgatgtatgtggtctttattatatgttacatacatcattaattgaatgtatctaaaagatagattttt 13311293  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 15712210 - 15712138
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||  ||||||||| ||  ||||||||||    
T  15712210 atgatgtatgtggtctttattatatgtcacatacatcattaattgaatgtatctaaaaaatggatttttgctt 15712138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 19531390 - 19531318
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||  |||||||||  | |||||||||||    
T  19531390 atgatgtatgtggtctttattatatgtcacatacatcattaattgaatgtatctaaaaagtgaatttttgctt 19531318  T

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Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 42013873 - 42013945
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||  |||||||||  | |||||||||||    
T  42013873 atgatgtatgtggtctttattatatgtcacatacatcattaattgaatgtatctaaaaagtgaatttttgctt 42013945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 43446948 - 43446876
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| |||||||||||||||||||||||| |||||||||||| ||  |||||||||  |||||||||||||    
T  43446948 atgatgtatgtggtctttattatatgtcacatacatcattaattaaatgtatctaaaaagtaaatttttgctt 43446876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 26300162 - 26300219
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||| |||||||||||||||||||||| | |||||||||||||||  |||||||||    
T  26300162 atgatgtatgtggtctttattatatgtcatatacatcattaattgaatgtatctaaaa 26300219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 38835603 - 38835542
Alignment:
Q  12 ggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||||||||||||||||| |||||||||||| ||  ||||||||| || |||||||||||    
T  38835603 ggtctttattatatgtcacatacatcattaattaaatgtatctaaaaaatgaatttttgctt 38835542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 8961277 - 8961316
Alignment:
Q  8 atgtggtctttattatatgtcacacacatcattaattgaa 47  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  8961277 atgtggtctttattatatgtcacatacatcattaattgaa 8961316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21945469 - 21945423
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaa 47  Q
    |||||| || ||||||||||||||||||||| |||||||||||||||    
T  21945469 atgatgtatctggtctttattatatgtcacatacatcattaattgaa 21945423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 37870080 - 37870125
Alignment:
Q  13 gtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||||||||||||||||  |||||||||||||| ||||||||||    
T  37870080 gtctttattatatgtcacattcatcattaattgaatatatctaaaa 37870125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 23914892 - 23914964
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| |||||||||||||||||||||||| ||||| |||| ||||  ||||| |||  | |||||||||||    
T  23914892 atgatgtatgtggtctttattatatgtcacatacatccttaaatgaatgtatcttaaaagtgaatttttgctt 23914964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13157384 - 13157430
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaa 47  Q
    |||||| || ||||||||||||||| ||||| |||||||||||||||    
T  13157384 atgatgtatatggtctttattatatatcacatacatcattaattgaa 13157430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 43426679 - 43426751
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| |||||||||||||||||||||||| | |||||||||||||  ||||||||| ||||||||||||||    
T  43426679 atgatgtatgtggtctttattatatgtcacatatatcattaattgaatgtatctaaaaaataaatttttgctt 43426751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 30902355 - 30902290
Alignment:
Q  8 atgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||||||||||||||||||||| |||||||||||||||  ||| ||||| || |||||||||||    
T  30902355 atgtggtctttattatatgtcacatacatcattaattgaatgtatttaaaaaatgaatttttgctt 30902290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 38594402 - 38594467
Alignment:
Q  8 atgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||||| ||||||||||||||| |||||||||||||||  ||||||||| ||| ||||||||||    
T  38594402 atgtggtccttattatatgtcacatacatcattaattgaatgtatctaaaaaatagatttttgctt 38594467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 38597998 - 38598063
Alignment:
Q  8 atgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||||| ||||||||||||||| |||||||||||||||  ||||||||| ||| ||||||||||    
T  38597998 atgtggtccttattatatgtcacatacatcattaattgaatgtatctaaaaaatagatttttgctt 38598063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 22373699 - 22373627
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| |||||||||||||||||||| | | ||||||||||||||| |||| ||||| ||| ||||||||||    
T  22373699 atgatgtatgtggtctttattatatgttatatacatcattaattgaatatatttaaaaaatatatttttgctt 22373627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 38618149 - 38618217
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaattttt 69  Q
    |||||| |||||||||||||||||| ||||| |||||||||||||||  ||||||| | ||| ||||||    
T  38618149 atgatgtatgtggtctttattatatatcacatacatcattaattgaatgtatctaacaaatagattttt 38618217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 3887891 - 3887941
Alignment:
Q  8 atgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||| ||||||||||||||||||| |||||||||||||||  |||||||||    
T  3887891 atgtagtctttattatatgtcacatacatcattaattgaatgtatctaaaa 3887941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5574199 - 5574153
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaa 47  Q
    |||||| |||||||||||||||||||||||| | |||||||||||||    
T  5574199 atgatgtatgtggtctttattatatgtcacatatatcattaattgaa 5574153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 25278253 - 25278191
Alignment:
Q  11 tggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    ||||||||||||| | ||||| |||||||||||| ||  |||||||||| |||||||||||||    
T  25278253 tggtctttattatgtatcacatacatcattaattaaatgtatctaaaaggtaaatttttgctt 25278191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 34248466 - 34248523
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||| |||| ||||||||||||||||| | |||||||||||||||  |||||||||    
T  34248466 atgatgtatgttgtctttattatatgtcagatacatcattaattgaatgtatctaaaa 34248523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 1981049 - 1981092
Alignment:
Q  15 ctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    ||||||||||||||||| |||||||||||||||  |||||||||    
T  1981049 ctttattatatgtcacatacatcattaattgaatgtatctaaaa 1981092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 6566981 - 6567022
Alignment:
Q  16 tttattatatgtcacacacatcattaattgaaaatatctaaa 57  Q
    ||||||||||||| || ||||||||||||||| |||||||||    
T  6566981 tttattatatgtcgcatacatcattaattgaatatatctaaa 6567022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 3714271 - 3714335
Alignment:
Q  8 atgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgct 72  Q
    |||| ||||||||||||| ||||| ||||||||||||| | ||| ||||||  | ||||||||||    
T  3714271 atgtagtctttattatatatcacatacatcattaattggatatacctaaaaagtgaatttttgct 3714335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 7837165 - 7837117
Alignment:
Q  10 gtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    ||||||||||||||||||||||   |||||||||||||  |||||||||    
T  7837165 gtggtctttattatatgtcacatttatcattaattgaatgtatctaaaa 7837117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 40262557 - 40262500
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  40262557 atgatgtatgtggtctttattatatgtcacatacatcattaattgaatatatctaaaa 40262500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 35367529 - 35367601
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||  ||||||||| ||  ||||||||||    
T  35367529 atgatgcatgtggtctttataatatgtcacatacatcattaattgaatgtatctaaaaaatggatttttgctt 35367601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 3384312 - 3384240
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| ||||| |||||||||||||||||| |||||||||||||||  |||||||||  | |||||||||||    
T  3384312 atgatgtatgtgatctttattatatgtcacatacatcattaattgaatgtatctaaaaagtgaatttttgctt 3384240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 8258032 - 8257960
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||||  |||||||||  | |||||||||||    
T  8258032 atgatgtatgtggtctttattatatgtcacatacattattaattgaatgtatctaaaaagtgaatttttgctt 8257960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 14418108 - 14418180
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| |||||||||||||||||||||||| ||||||||| |||||  |||||||||  | |||||||||||    
T  14418108 atgatgtatgtggtctttattatatgtcacatacatcattagttgaatgtatctaaaaagtgaatttttgctt 14418180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 31008310 - 31008367
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||| |||||||||||||||||||| ||| |||||||||||||||  |||||||||    
T  31008310 atgatgtatgtggtctttattatatgttacatacatcattaattgaatgtatctaaaa 31008367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 37734862 - 37734790
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| ||| |||||||||||||||||||| |||||||||||||||  ||||| |||  | |||||||||||    
T  37734862 atgatgtatgcggtctttattatatgtcacatacatcattaattgaatgtatcttaaaagtgaatttttgctt 37734790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 15439944 - 15439882
Alignment:
Q  8 atgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttg 70  Q
    |||||||||||||||||||||||| | |||||||||||||  |||||| || ||| |||||||    
T  15439944 atgtggtctttattatatgtcacatatatcattaattgaatgtatctacaaaatagatttttg 15439882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 2349845 - 2349788
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||| |||| |||||||||||||||||||  ||||||||||||||  |||||||||    
T  2349845 atgatgtatgtagtctttattatatgtcacatgcatcattaattgaatgtatctaaaa 2349788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 6065550 - 6065493
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||| |||||||| |||||||||||||||  ||||||||||||||  |||||||||    
T  6065550 atgatgtatgtggtccttattatatgtcacatccatcattaattgaatgtatctaaaa 6065493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 34658468 - 34658403
Alignment:
Q  8 atgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||||||||||||||||||||| |||||||||||| ||  ||||| |||  | |||||||||||    
T  34658468 atgtggtctttattatatgtcacatacatcattaattaaatgtatctgaaaagtgaatttttgctt 34658403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 639850 - 639922
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| |||||||||||||||||||||||| ||||| |||| ||||  ||||| |||  | |||||||||||    
T  639850 atgatgtatgtggtctttattatatgtcacatacatccttaaatgaatgtatcttaaaagtgaatttttgctt 639922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 27206810 - 27206866
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaa 57  Q
    |||||| |||| |||||||||||||||| || |||||||||||||||  ||||||||    
T  27206810 atgatgtatgtagtctttattatatgtcgcatacatcattaattgaatgtatctaaa 27206866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 48022646 - 48022718
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| |||||||||||||||||||||||| ||||| |||| ||||  ||||| |||  | |||||||||||    
T  48022646 atgatgtatgtggtctttattatatgtcacatacatccttaaatgaatgtatcttaaaagtgaatttttgctt 48022718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 5856439 - 5856400
Alignment:
Q  8 atgtggtctttattatatgtcacacacatcattaattgaa 47  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  5856439 atgtggtctttattatatgtcacgtacatcattaattgaa 5856400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 4602726 - 4602676
Alignment:
Q  8 atgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    ||||||| |||||||||||||||| | |||||||||||||  |||||||||    
T  4602726 atgtggtatttattatatgtcacatatatcattaattgaatgtatctaaaa 4602676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33604080 - 33604034
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaa 47  Q
    |||||| |||||||||||||||||||||||| ||||| |||| ||||    
T  33604080 atgatgtatgtggtctttattatatgtcacatacatccttaaatgaa 33604034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 2352984 - 2352927
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||| ||||| |||||||||||||||| | || ||||||||||||  |||||||||    
T  2352984 atgatgtatgtgctctttattatatgtcaaatacgtcattaattgaatgtatctaaaa 2352927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 9056110 - 9056038
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||  |||||||||  | |||||||||||    
T  9056110 atgatgtatgtggtctttattatatgtcacatacatcattaattgaatgtatctaaaaagtgaatttttgctt 9056038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 13211297 - 13211358
Alignment:
Q  8 atgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaattttt 69  Q
    |||||||||||||||||||||||| |||||||||||||||  ||||||||| ||| ||||||    
T  13211297 atgtggtctttattatatgtcacatacatcattaattgaatgtatctaaaaaatagattttt 13211358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 40098849 - 40098777
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| |||||||||||||||||||||||| | |||||||||||||  |||||||||  || ||||||||||    
T  40098849 atgatgtatgtggtctttattatatgtcacatatatcattaattgaatgtatctaaaaagtagatttttgctt 40098777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 7377605 - 7377662
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||| |||||| ||||||||||||||||| |||||||||||||||  |||||||||    
T  7377605 atgatgtatgtgggctttattatatgtcacatacatcattaattgaatgtatctaaaa 7377662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 14381289 - 14381346
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||| |||||||||||||||||| ||||| |||||||||||||||  |||||||||    
T  14381289 atgatgtatgtggtctttattatatatcacatacatcattaattgaatgtatctaaaa 14381346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 37716132 - 37716193
Alignment:
Q  8 atgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaattttt 69  Q
    |||| ||||||||||||| ||||| |||||||||||||||  ||||||||| ||||||||||    
T  37716132 atgtagtctttattatatatcacatacatcattaattgaatgtatctaaaaaataaattttt 37716193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 29451809 - 29451762
Alignment:
Q  8 atgtggtctttattatatgtcacacacatcattaattgaaaatatcta 55  Q
    |||||||||| ||||||||||||| ||||||||||||||| |||||||    
T  29451809 atgtggtcttaattatatgtcacatacatcattaattgaatatatcta 29451762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 11692098 - 11692144
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaa 47  Q
    |||||| ||||| |||||||||||||||||| |||||||||||||||    
T  11692098 atgatgtatgtgatctttattatatgtcacatacatcattaattgaa 11692144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 13228959 - 13228913
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaa 47  Q
    |||||| |||||||||||||||||||||||| | |||||||||||||    
T  13228959 atgatgtatgtggtctttattatatgtcacatatatcattaattgaa 13228913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 26014620 - 26014665
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattga 46  Q
    |||||| |||||||||||||||||||||||| |||| |||||||||    
T  26014620 atgatgtatgtggtctttattatatgtcacatacattattaattga 26014665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 15285730 - 15285674
Alignment:
Q  13 gtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaattttt 69  Q
    ||||||||||||||||||| |||||||||||| ||  ||| ||||| ||||||||||    
T  15285730 gtctttattatatgtcacatacatcattaattaaatgtatttaaaaaataaattttt 15285674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 15466099 - 15466043
Alignment:
Q  13 gtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaattttt 69  Q
    ||||||||||||||||||| |||||||||||| ||  ||| ||||| ||||||||||    
T  15466099 gtctttattatatgtcacatacatcattaattaaatgtatttaaaaaataaattttt 15466043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 1739634 - 1739688
Alignment:
Q  19 attatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    ||||||||| ||| |||||||||||||||  |||||||||  |||||||||||||    
T  1739634 attatatgttacatacatcattaattgaatgtatctaaaaagtaaatttttgctt 1739688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 5418604 - 5418533
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgct 72  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||  ||||||||| ||  |||||||||    
T  5418604 atgatgtatgtggtctttattatatgtcacatacatcattaattgaatgtatctaaaaaattgatttttgct 5418533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 13689618 - 13689553
Alignment:
Q  8 atgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||| ||||||||||||||||||| |||||||||||||||  ||||||||| ||| ||||||||||    
T  13689618 atgttgtctttattatatgtcacatacatcattaattgaatgtatctaaaaaatagatttttgctt 13689553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 24941162 - 24941233
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgct 72  Q
    |||||| |||||||||||||||||| ||| | |||||||||||||||  |||||||||| | ||||||||||    
T  24941162 atgatgtatgtggtctttattatatatcaaatacatcattaattgaatgtatctaaaaggtgaatttttgct 24941233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 10031572 - 10031629
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||| ||||| |||||||||||||||||| |||| ||||||| || ||||||||||    
T  10031572 atgatgtatgtgatctttattatatgtcacatacattattaattaaatatatctaaaa 10031629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 38539560 - 38539495
Alignment:
Q  8 atgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    ||||||||||||||||||| || | |||||||| |||||| | || ||||| ||||||||||||||    
T  38539560 atgtggtctttattatatgccatatacatcatttattgaataaatttaaaatataaatttttgctt 38539495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 29224014 - 29223959
Alignment:
Q  18 tattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||||||||||| | ||||||||||||| |||||||||| ||  ||||||||||    
T  29224014 tattatatgtcacatatatcattaattgaatatatctaaaaaatggatttttgctt 29223959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 52817656 - 52817584
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| ||||| |||||||||||||||||| ||||| |||| ||||  ||||| |||  | |||||||||||    
T  52817656 atgatgtatgtgatctttattatatgtcacatacatccttaaatgaatgtatcttaaaagtgaatttttgctt 52817584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 29512220 - 29512163
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||  |||||||||    
T  29512220 atgatgtatgtggtctttattatatgtcacatacatcattaattgaatgtatctaaaa 29512163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 38455216 - 38455285
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttg 70  Q
    |||||| |||||||||||||||||||||||| |||||||||||| ||  |||||||||  ||||||||||    
T  38455216 atgatgtatgtggtctttattatatgtcacatacatcattaattaaatgtatctaaaaagtaaatttttg 38455285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 51239301 - 51239366
Alignment:
Q  8 atgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||||| ||||||||||||||| |||||||||||||||  ||||||||| ||| ||||||||||    
T  51239301 atgtggtccttattatatgtcacatacatcattaattgaatgtatctaaaaaatagatttttgctt 51239366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 52315441 - 52315498
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||  |||||||||    
T  52315441 atgatgtatgtggtctttattatatgtcacatacatcattaattgaatgtatctaaaa 52315498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 52931692 - 52931749
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||  |||||||||    
T  52931692 atgatgtatgtggtctttattatatgtcacatacatcattaattgaatgtatctaaaa 52931749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 36362655 - 36362727
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| |||||||| ||||||||||||||| |||||||||||||||  |||||||||  || ||||||||||    
T  36362655 atgatgtatgtggtccttattatatgtcacatacatcattaattgaatgtatctaaaaagtagatttttgctt 36362727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 52168372 - 52168300
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| ||||||||||||||||||| |||| |||||||||||| ||  |||||||||  |||||||||||||    
T  52168372 atgatgtatgtggtctttattatatgccacatacatcattaattaaatgtatctaaaaagtaaatttttgctt 52168300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21403985 - 21403939
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaa 47  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||    
T  21403985 atgatgtatgtggtctttattatatgtcacatacatcattaattgaa 21403939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 41349749 - 41349703
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaa 47  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||    
T  41349749 atgatgtatgtggtctttattatatgtcacatacatcattaattgaa 41349703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 51617413 - 51617363
Alignment:
Q  8 atgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||||||||||||||||||||| |||||||||||||||  |||||||||    
T  51617413 atgtggtctttattatatgtcacatacatcattaattgaatgtatctaaaa 51617363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 29565191 - 29565126
Alignment:
Q  8 atgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||||||||||||||||||||| |||||||||||| ||  ||||||||| ||  ||||||||||    
T  29565191 atgtggtctttattatatgtcacatacatcattaattaaatgtatctaaaaaattgatttttgctt 29565126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 22173869 - 22173812
Alignment:
Q  16 tttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||||||||||||| |||||||||||||||  |||||||||  || ||||||||||    
T  22173869 tttattatatgtcacatacatcattaattgaatgtatctaaaatgtagatttttgctt 22173812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 42449156 - 42449225
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttg 70  Q
    |||||| ||||| ||||||||||||||||||  ||||||||||||||  ||| ||||| ||| |||||||    
T  42449156 atgatgtatgtgatctttattatatgtcacattcatcattaattgaatgtatttaaaaaatatatttttg 42449225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 17552564 - 17552520
Alignment:
Q  3 gatgcatgtggtctttattatatgtcacacacatcattaattgaa 47  Q
    |||| |||||||||||||||||||||||| |||| ||||||||||    
T  17552564 gatgtatgtggtctttattatatgtcacatacattattaattgaa 17552520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 32759017 - 32759085
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaattttt 69  Q
    |||||| | |||||||||||||||| ||||| | |||||||||| || ||||||||||  |||||||||    
T  32759017 atgatgtacgtggtctttattatatatcacatatatcattaattaaatatatctaaaaagtaaattttt 32759085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 37492458 - 37492402
Alignment:
Q  13 gtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaattttt 69  Q
    ||||||||||||||||| | ||||| |||||||||  ||||||||| ||||||||||    
T  37492458 gtctttattatatgtcatatacatcgttaattgaatgtatctaaaaaataaattttt 37492402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29720165 - 29720119
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaa 47  Q
    |||||| |||||||||||||||||||||||| | |||| ||||||||    
T  29720165 atgatgtatgtggtctttattatatgtcacatatatcaataattgaa 29720119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 50260984 - 50261030
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaa 47  Q
    |||||| |||||||||||||||||||||||| ||||| |||| ||||    
T  50260984 atgatgtatgtggtctttattatatgtcacatacatccttaaatgaa 50261030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 22099868 - 22099811
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||| |||| || |||||||||||||||| |||| ||||||||||  |||||||||    
T  22099868 atgatgtatgtagtttttattatatgtcacatacattattaattgaatgtatctaaaa 22099811  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 7981196 - 7981268
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    ||||||||||||||||||||| ||    ||| | |||||| |||||| | |||||||| ||||||||||||||    
T  7981196 atgatgcatgtggtctttattgtagacaacatatatcatttattgaataaatctaaaatataaatttttgctt 7981268  T

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Target: scaffold0536 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 4001 - 4073
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| |||||||||||||||||||||||| ||| |||| ||||||  |||||||||  |||||||||||||    
T  4001 atgatgtatgtggtctttattatatgtcacatacaacatttattgaatgtatctaaaaagtaaatttttgctt 4073  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 17773552 - 17773624
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| |||||||||||||||||| ||||| |||||||||||||||  |||||||||  || ||||||||||    
T  17773552 atgatgtatgtggtctttattatatatcacatacatcattaattgaatgtatctaaaaagtagatttttgctt 17773624  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 21506552 - 21506495
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||| ||||| |||||||||||||||||| |||||||||||||||  |||||||||    
T  21506552 atgatgtatgtgatctttattatatgtcacatacatcattaattgaatgtatctaaaa 21506495  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 17268064 - 17268110
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaa 47  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||||    
T  17268064 atgatgtatgtggtctttattatatgtcacatacattattaattgaa 17268110  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 30460702 - 30460648
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatcta 55  Q
    |||||| |||||||||||||||||| ||||| |||||||| |||||| |||||||    
T  30460702 atgatgtatgtggtctttattatatatcacatacatcattgattgaatatatcta 30460648  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 21998105 - 21998162
Alignment:
Q  16 tttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||||||||||||| |||||||||||||||  |||||||||  || ||||||||||    
T  21998105 tttattatatgtcacatacatcattaattgaatgtatctaaaaagtagatttttgctt 21998162  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 28577659 - 28577724
Alignment:
Q  8 atgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||||||||||||||| ||||| |||| ||||||||||  |||||||||  || ||||||||||    
T  28577659 atgtggtctttattatatatcacatacattattaattgaatgtatctaaaaagtatatttttgctt 28577724  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 30397776 - 30397832
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||| |||||| ||||||||||||||||| |||||||||||||||  |||||||||    
T  30397776 atgatgtatgtgg-ctttattatatgtcacatacatcattaattgaatgtatctaaaa 30397832  T

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Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 120196 - 120268
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| ||||||| |||||| ||| ||||| |||||||||||||||  |||||||||  |||||||||||||    
T  120196 atgatgtatgtggtatttattgtatatcacatacatcattaattgaatgtatctaaaaagtaaatttttgctt 120268  T

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Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 246846 - 246918
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| ||||||| |||||||||||||| | |||||||||||||||  |||||||||  || ||||||||||    
T  246846 atgatgtatgtggtttttattatatgtcagatacatcattaattgaatgtatctaaaaagtagatttttgctt 246918  T

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Target: scaffold0047 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 61251 - 61195
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    |||||| |||||| ||||||||||||||||| |||||||||||||||  |||||||||    
T  61251 atgatgtatgtgg-ctttattatatgtcacatacatcattaattgaatgtatctaaaa 61195  T

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Target: scaffold0039 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 54477 - 54405
Alignment:
Q  1 atgatgcatgtggtctttattatatgtcacacacatcattaattgaaaatatctaaaagataaatttttgctt 73  Q
    |||||| |||||||| ||||||||| ||| | |||||||||||||||  |||||||||  || ||||||||||    
T  54477 atgatgtatgtggtccttattatatatcatatacatcattaattgaatgtatctaaaaagtagatttttgctt 54405  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 17246 - 17198
Alignment:
Q  10 gtggtctttattatatgtcacacacatcattaattgaaaatatctaaaa 58  Q
    ||||| |||||||| ||||||| ||||||||||||||| |||| |||||    
T  17246 gtggtttttattatgtgtcacatacatcattaattgaatatatataaaa 17198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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