View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6613_high_1 (Length: 240)

Name: NF6613_high_1
Description: NF6613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6613_high_1
NF6613_high_1
[»] chr1 (19 HSPs)
chr1 (18-117)||(11694185-11694279)
chr1 (118-174)||(30984151-30984207)
chr1 (120-171)||(10771355-10771406)
chr1 (114-170)||(45915503-45915559)
chr1 (115-170)||(28649680-28649735)
chr1 (118-169)||(44870232-44870283)
chr1 (121-170)||(44503191-44503240)
chr1 (118-170)||(5567159-5567211)
chr1 (118-170)||(23351646-23351698)
chr1 (114-170)||(37388891-37388947)
chr1 (118-170)||(44870484-44870536)
chr1 (114-170)||(49057408-49057464)
chr1 (116-170)||(4062538-4062592)
chr1 (116-170)||(22506950-22507004)
chr1 (128-174)||(44503463-44503509)
chr1 (121-170)||(4029551-4029600)
chr1 (117-174)||(30983250-30983307)
chr1 (118-174)||(33259375-33259431)
chr1 (118-174)||(33279534-33279590)
[»] chr8 (22 HSPs)
chr8 (114-174)||(1939446-1939506)
chr8 (117-174)||(17132743-17132800)
chr8 (118-174)||(9899656-9899712)
chr8 (107-174)||(9123129-9123196)
chr8 (121-174)||(37587370-37587423)
chr8 (118-174)||(11761038-11761094)
chr8 (121-174)||(9898967-9899020)
chr8 (117-174)||(23154312-23154369)
chr8 (118-174)||(26635510-26635566)
chr8 (119-174)||(1940146-1940201)
chr8 (120-174)||(37586724-37586778)
chr8 (121-174)||(26636262-26636315)
chr8 (116-174)||(9122721-9122779)
chr8 (116-174)||(11761748-11761806)
chr8 (118-163)||(23153548-23153593)
chr8 (121-174)||(8977730-8977783)
chr8 (114-170)||(30328909-30328965)
chr8 (118-169)||(3808879-3808930)
chr8 (116-174)||(7601712-7601770)
chr8 (136-174)||(15224769-15224807)
chr8 (114-170)||(7824917-7824973)
chr8 (114-170)||(25211492-25211548)
[»] chr7 (19 HSPs)
chr7 (116-174)||(20016752-20016810)
chr7 (113-174)||(3843233-3843294)
chr7 (117-174)||(23966314-23966371)
chr7 (118-174)||(4706634-4706690)
chr7 (118-174)||(4707471-4707527)
chr7 (117-172)||(26776309-26776364)
chr7 (117-174)||(3842511-3842568)
chr7 (121-174)||(20016035-20016088)
chr7 (117-170)||(44372620-44372673)
chr7 (117-170)||(44381476-44381529)
chr7 (114-174)||(21715068-21715128)
chr7 (136-174)||(11337714-11337752)
chr7 (114-172)||(21914643-21914701)
chr7 (136-174)||(21984876-21984914)
chr7 (116-174)||(43901308-43901366)
chr7 (137-174)||(28061812-28061849)
chr7 (117-170)||(39459009-39459062)
chr7 (137-174)||(41567926-41567963)
chr7 (118-170)||(7945333-7945385)
[»] chr5 (24 HSPs)
chr5 (116-174)||(15795726-15795784)
chr5 (115-174)||(4285157-4285216)
chr5 (117-174)||(35988854-35988911)
chr5 (107-174)||(30380904-30380971)
chr5 (118-174)||(31023587-31023643)
chr5 (116-174)||(30381577-30381635)
chr5 (121-174)||(35989585-35989638)
chr5 (114-170)||(31024332-31024388)
chr5 (117-174)||(4285734-4285791)
chr5 (112-174)||(2046039-2046097)
chr5 (117-170)||(2320791-2320844)
chr5 (112-169)||(8894676-8894733)
chr5 (117-174)||(23911912-23911969)
chr5 (121-174)||(23912195-23912248)
chr5 (121-174)||(24052414-24052467)
chr5 (114-170)||(37376368-37376424)
chr5 (115-174)||(16161935-16161993)
chr5 (121-150)||(2046743-2046772)
chr5 (121-174)||(7600725-7600778)
chr5 (121-174)||(7601028-7601081)
chr5 (105-150)||(16182617-16182662)
chr5 (114-170)||(27884576-27884632)
chr5 (118-166)||(35086800-35086848)
chr5 (120-168)||(35151581-35151629)
[»] chr2 (18 HSPs)
chr2 (117-174)||(24558839-24558896)
chr2 (117-174)||(21716439-21716496)
chr2 (118-174)||(24559555-24559611)
chr2 (116-174)||(28917108-28917166)
chr2 (117-174)||(2238825-2238882)
chr2 (121-174)||(9276828-9276881)
chr2 (117-174)||(21720201-21720258)
chr2 (118-174)||(28916285-28916341)
chr2 (114-174)||(29090886-29090946)
chr2 (116-165)||(9277140-9277189)
chr2 (118-170)||(2237982-2238034)
chr2 (122-174)||(3150227-3150279)
chr2 (115-169)||(35421019-35421073)
chr2 (117-174)||(3149918-3149975)
chr2 (114-170)||(41916900-41916956)
chr2 (116-174)||(5429047-5429105)
chr2 (119-170)||(29359287-29359338)
chr2 (117-170)||(80608-80661)
[»] chr3 (24 HSPs)
chr3 (114-174)||(46906863-46906923)
chr3 (118-174)||(20289593-20289649)
chr3 (118-174)||(35325768-35325824)
chr3 (115-174)||(26051467-26051526)
chr3 (113-174)||(3990848-3990909)
chr3 (121-174)||(26052179-26052232)
chr3 (117-174)||(25166749-25166806)
chr3 (121-174)||(54600136-54600189)
chr3 (117-169)||(12216093-12216145)
chr3 (118-174)||(25165899-25165955)
chr3 (118-174)||(35324996-35325052)
chr3 (117-168)||(3990116-3990167)
chr3 (114-170)||(1984842-1984898)
chr3 (121-170)||(12216851-12216900)
chr3 (116-166)||(9598280-9598330)
chr3 (117-170)||(39451969-39452022)
chr3 (118-170)||(37737617-37737669)
chr3 (105-169)||(44527126-44527190)
chr3 (136-174)||(4996899-4996937)
chr3 (136-174)||(15951518-15951556)
chr3 (136-174)||(44707553-44707591)
chr3 (117-170)||(9175749-9175802)
chr3 (117-170)||(52935685-52935738)
chr3 (118-170)||(37921080-37921132)
[»] scaffold0765 (1 HSPs)
scaffold0765 (118-174)||(360-416)
[»] chr6 (16 HSPs)
chr6 (116-174)||(6160454-6160512)
chr6 (112-174)||(9699159-9699221)
chr6 (114-174)||(24051251-24051311)
chr6 (118-174)||(34729938-34729994)
chr6 (117-174)||(9698448-9698505)
chr6 (117-170)||(28302171-28302224)
chr6 (117-170)||(28509849-28509902)
chr6 (118-174)||(29979228-29979284)
chr6 (116-174)||(22352959-22353017)
chr6 (117-174)||(6159753-6159810)
chr6 (121-174)||(22353272-22353325)
chr6 (119-171)||(24052001-24052053)
chr6 (117-170)||(29843739-29843792)
chr6 (135-174)||(476938-476977)
chr6 (121-174)||(18493705-18493758)
chr6 (117-170)||(21634364-21634417)
[»] chr4 (21 HSPs)
chr4 (120-174)||(52502407-52502461)
chr4 (117-174)||(52503508-52503565)
chr4 (117-174)||(15807655-15807712)
chr4 (121-169)||(35022460-35022508)
chr4 (118-174)||(47864489-47864545)
chr4 (118-174)||(47865297-47865353)
chr4 (116-170)||(35021799-35021853)
chr4 (116-170)||(47848834-47848888)
chr4 (114-174)||(52477641-52477701)
chr4 (119-174)||(15808484-15808539)
chr4 (117-170)||(4900256-4900309)
chr4 (121-174)||(6480529-6480582)
chr4 (115-174)||(7401973-7402031)
chr4 (119-170)||(50064679-50064730)
chr4 (116-174)||(29145240-29145298)
chr4 (136-174)||(38657845-38657883)
chr4 (112-174)||(41266434-41266496)
chr4 (136-174)||(53535602-53535640)
chr4 (118-174)||(7402893-7402948)
chr4 (118-170)||(55592582-55592634)
chr4 (118-170)||(55593390-55593442)
[»] scaffold0817 (1 HSPs)
scaffold0817 (121-174)||(5012-5065)
[»] scaffold0141 (2 HSPs)
scaffold0141 (114-174)||(10302-10362)
scaffold0141 (118-174)||(11141-11197)
[»] scaffold0903 (1 HSPs)
scaffold0903 (117-174)||(246-303)
[»] scaffold0518 (1 HSPs)
scaffold0518 (114-169)||(1076-1131)
[»] scaffold0090 (1 HSPs)
scaffold0090 (114-170)||(45675-45731)


Alignment Details
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 11694185 - 11694279
Alignment:
Q  18 tcatttaaacaaacaaggttataagtttttccaagttgtaagctaacttataagcattaccaaagagagccttattgtgaagaaaccataatagaattta 117  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    ||||||||||||||||||||||| ||||||||| |||| ||||||||||||    
T  11694185 tcatttaaacaaacaaggttataagtttttctaagttgtaagcta----ataagcattaccaaagagagcctaattgtgaag-aaccgtaatagaattta 11694279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 30984207 - 30984151
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||| ||||||||||||||||| | | |||||||||||||||||||    
T  30984207 ggcttaaatatgcaatctgtccctgtaatttggacgcgttttgattttcgtccctgt 30984151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 10771355 - 10771406
Alignment:
Q  120 cttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccc 171  Q
    ||||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  10771355 cttaaatatgcaaaccgtccctgtaatttgagcgcattttgattttcgtccc 10771406  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 45915503 - 45915559
Alignment:
Q  114 tttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    ||||||||||||||||||| | ||||||||||||||| | |||||||||||| ||||    
T  45915503 tttaggcttaaatatgcaatccgtccctgtaatttggacgcattttgatttttgtcc 45915559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 28649680 - 28649735
Alignment:
Q  115 ttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||||||||||||||||| | ||||||||||||||| | | |||||||||||||||    
T  28649680 ttaggcttaaatatgcaatccgtccctgtaatttggacgcgttttgattttcgtcc 28649735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 44870232 - 44870283
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtc 169  Q
    |||||||||||||||||  |||||||||||||| | ||||||||||||||||    
T  44870232 ggcttaaatatgcaaaccatccctgtaatttggacgcattttgattttcgtc 44870283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 44503191 - 44503240
Alignment:
Q  121 ttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||||||||||||| |||| ||||||||| || |||||||||||||||||    
T  44503191 ttaaatatgcaaaccgtccttgtaatttgagcgcattttgattttcgtcc 44503240  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 5567159 - 5567211
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    ||||||||||||||| ||||||||||||||||| | | |||||||||| ||||    
T  5567159 ggcttaaatatgcaatctgtccctgtaatttggacgcgttttgatttttgtcc 5567211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 23351698 - 23351646
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    ||||||||||||||| | ||||||||||||||| | | |||||||||||||||    
T  23351698 ggcttaaatatgcaatccgtccctgtaatttggacgcgttttgattttcgtcc 23351646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 37388891 - 37388947
Alignment:
Q  114 tttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    ||||||||||||||||||| | ||||| ||||||||| | | |||||||||||||||    
T  37388891 tttaggcttaaatatgcaatccgtcccagtaatttggacgcgttttgattttcgtcc 37388947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 44870536 - 44870484
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    ||||||||||| ||||| ||||||||||||||| | | |||||||||||||||    
T  44870536 ggcttaaatatacaaaccgtccctgtaatttggacgccttttgattttcgtcc 44870484  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 49057408 - 49057464
Alignment:
Q  114 tttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||| |||||||||||||| | ||||||||||||||| | | |||||||||||||||    
T  49057408 tttatgcttaaatatgcaatccgtccctgtaatttggacgcgttttgattttcgtcc 49057464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 4062592 - 4062538
Alignment:
Q  116 taggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    ||||||||||||||||| | ||||||||||||||  | | |||||||||||||||    
T  4062592 taggcttaaatatgcaatccgtccctgtaatttgaacgcgttttgattttcgtcc 4062538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 22507004 - 22506950
Alignment:
Q  116 taggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    ||||||||||||||||| | |||| |||||||||| | | |||||||||||||||    
T  22507004 taggcttaaatatgcaatccgtccttgtaatttggacgcgttttgattttcgtcc 22506950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 44503509 - 44503463
Alignment:
Q  128 tgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||  ||||||||||||| || |||||||||||||||||||||    
T  44503509 tgcaaaccttccctgtaatttgagcgcattttgattttcgtccctgt 44503463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 4029551 - 4029600
Alignment:
Q  121 ttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||||||||||| | ||||||||||||||||  | |||||||||||||||    
T  4029551 ttaaatatgcaatccgtccctgtaatttgggtgcgttttgattttcgtcc 4029600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 30983250 - 30983307
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||| | || ||| |||||||| | | |||||||||||||||||||    
T  30983250 aggcttaaatatgcaatccgttcctataatttggacgcgttttgattttcgtccctgt 30983307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 33259431 - 33259375
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||| ||| ||||||||||||||||  |  ||||| |||||||||||||    
T  33259431 ggcttaaatatgtaaattgtccctgtaatttggcgtgtttttggttttcgtccctgt 33259375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 33279590 - 33279534
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||| ||| ||||||||||||||||  |  ||||| |||||||||||||    
T  33279590 ggcttaaatatgtaaattgtccctgtaatttggcgtgtttttggttttcgtccctgt 33279534  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 1939446 - 1939506
Alignment:
Q  114 tttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1939446 tttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 1939506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 17132800 - 17132743
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17132800 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 17132743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 9899712 - 9899656
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9899712 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 9899656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 9123196 - 9123129
Alignment:
Q  107 aatagaatttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9123196 aatataatataggcttaaatatgcaaactgtccatgtaatttgggctcattttgattttcgtccctgt 9123129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 37587423 - 37587370
Alignment:
Q  121 ttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37587423 ttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 37587370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 11761038 - 11761094
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11761038 ggcttaaatatgcaaaccgtccctgtaatttgggctcattttgattttcgtccctgt 11761094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 9898967 - 9899020
Alignment:
Q  121 ttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9898967 ttaaatatgcaaaccgtccctgtaatttgggctcattttgattttcgtccctgt 9899020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 23154369 - 23154312
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  23154369 aggcttaaatatgcaaaccgtccctgtaatttgggcgcattttgattttcgtccctgt 23154312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 26635510 - 26635566
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  26635510 ggcttaaatatgcaaaccgtccctgtaatttgggttcattttgattttcgtccctgt 26635566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 1940201 - 1940146
Alignment:
Q  119 gcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  1940201 gcttaaatatgcaaactgtctctgtagtttgggctcattttgattttcgtccctgt 1940146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 37586724 - 37586778
Alignment:
Q  120 cttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  37586724 cttaaatatgcaaaccgtccctgtaatttaggctcattttgattttcgtccctgt 37586778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 26636315 - 26636262
Alignment:
Q  121 ttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  26636315 ttaaatatgcaaaccgtccctgtaatttgggctaattttgattttcgtccctgt 26636262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 9122721 - 9122779
Alignment:
Q  116 taggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||| ||||| |||||    
T  9122721 taggcttaaatatggaaaccgtccctgtaatttgggctcattttgatattcgttcctgt 9122779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 11761806 - 11761748
Alignment:
Q  116 taggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||| |||||||||||||| | |||||||||||||||| ||||||||||||||||||||    
T  11761806 taggtttaaatatgcaaaccgcccctgtaatttgggctaattttgattttcgtccctgt 11761748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 23153548 - 23153593
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgatt 163  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||    
T  23153548 ggcttaaatatgcaaaccgtccctgtaatttgggcgcattttgatt 23153593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 8977783 - 8977730
Alignment:
Q  121 ttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||| ||||||||||||||||| | | |||||||||||||| ||||    
T  8977783 ttaaatatgcaatctgtccctgtaatttggacgcgttttgattttcgtctctgt 8977730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 30328965 - 30328909
Alignment:
Q  114 tttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    ||||||||||||||||||| | ||||| ||||||||| | | |||||||||||||||    
T  30328965 tttaggcttaaatatgcaatccgtcccagtaatttggacgcgttttgattttcgtcc 30328909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 3808879 - 3808930
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtc 169  Q
    ||||||||||||||| | ||||||||||||||| | | ||||||||||||||    
T  3808879 ggcttaaatatgcaatccgtccctgtaatttggacgcgttttgattttcgtc 3808930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 7601770 - 7601712
Alignment:
Q  116 taggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||  ||  |||||||||||||||||   |||||||||||||||||||    
T  7601770 taggcttaaatatgataatcgtccctgtaatttgggccagttttgattttcgtccctgt 7601712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 15224769 - 15224807
Alignment:
Q  136 gtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  15224769 gtccctgtaatttgggcccgttttgattttcgtccctgt 15224807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 7824973 - 7824917
Alignment:
Q  114 tttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    ||||||||| ||||| ||| ||||||| ||||||||| | | |||||||||||||||    
T  7824973 tttaggcttgaatatccaatctgtcccagtaatttggacgcgttttgattttcgtcc 7824917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 25211492 - 25211548
Alignment:
Q  114 tttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    ||||||||||||||||||| ||||||| ||||| | | | | |||||||||||||||    
T  25211492 tttaggcttaaatatgcaatctgtcccagtaatctcgacgcgttttgattttcgtcc 25211548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 20016810 - 20016752
Alignment:
Q  116 taggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016810 taggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 20016752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 3843294 - 3843233
Alignment:
Q  113 atttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  3843294 attttggcttaaatatgcaaaccgtctctgtaatttgggctcattttgattttcgtccctgt 3843233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 23966314 - 23966371
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||    
T  23966314 aggcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgt 23966371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 4706634 - 4706690
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||    
T  4706634 ggcttaaatatgcaaaccgtccctgtaatttgggcggattttgattttcgtccctgt 4706690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 4707527 - 4707471
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||    
T  4707527 ggcttaaatatgcaaaccgtccctgtaatttgagctgattttgattttcgtccctgt 4707471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 26776309 - 26776364
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccct 172  Q
    |||||||||||||||||| |||||||||||||| || |||||||||||||||||||    
T  26776309 aggcttaaatatgcaaaccgtccctgtaatttgagcgcattttgattttcgtccct 26776364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 3842511 - 3842568
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||| || |||||    
T  3842511 aggcttaaatatgcaaactgtccttgtaatttcggctcattttgatttttgttcctgt 3842568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 20016035 - 20016088
Alignment:
Q  121 ttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||| |||| | ||||||||||| ||||||||||||||||||||    
T  20016035 ttaaatatgcaaaccgtccttataatttgggcttattttgattttcgtccctgt 20016088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 44372673 - 44372620
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||||||||||||||| | ||||||||||||||| | | |||||||||||||||    
T  44372673 aggcttaaatatgcaatccgtccctgtaatttggacgcgttttgattttcgtcc 44372620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 44381529 - 44381476
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||||||||||||||| | ||||||||||||||| | | |||||||||||||||    
T  44381529 aggcttaaatatgcaatccgtccctgtaatttggacgcgttttgattttcgtcc 44381476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 21715068 - 21715128
Alignment:
Q  114 tttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||| |||  |||||||||||||||  |  |||||||||||||||||||    
T  21715068 tttaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttgattttcgtccctgt 21715128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 11337752 - 11337714
Alignment:
Q  136 gtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  11337752 gtccctgtaatttgggcccgttttgattttcgtccctgt 11337714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 21914701 - 21914643
Alignment:
Q  114 tttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccct 172  Q
    |||||||||| |||||||||| |||||||||||||||  |  ||||| |||||||||||    
T  21914701 tttaggcttacatatgcaaaccgtccctgtaatttggtgtgtttttggttttcgtccct 21914643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 21984876 - 21984914
Alignment:
Q  136 gtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  21984876 gtccctgtaatttgggcccgttttgattttcgtccctgt 21984914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 43901308 - 43901366
Alignment:
Q  116 taggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||| |||||||||||||| |||| ||||||||| |   ||||||||||||||||||||    
T  43901308 taggtttaaatatgcaaaccgtccttgtaatttgagtgtattttgattttcgtccctgt 43901366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 28061812 - 28061849
Alignment:
Q  137 tccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||| || |||||||||||||||||||||    
T  28061812 tccctgtaatttgagcgcattttgattttcgtccctgt 28061849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 39459009 - 39459062
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||||||||||||||| | |||| ||||||||||||   |||||||||||||||    
T  39459009 aggcttaaatatgcaatccgtccatgtaatttgggcgtgttttgattttcgtcc 39459062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 41567963 - 41567926
Alignment:
Q  137 tccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||| | |||||||||||||||||||    
T  41567963 tccctgtaatttgggcccgttttgattttcgtccctgt 41567926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 7945333 - 7945385
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||||||||||||||   ||||||||||||||| | | |||||||||||||||    
T  7945333 ggcttaaatatgcaattcgtccctgtaatttggacacgttttgattttcgtcc 7945385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 15795784 - 15795726
Alignment:
Q  116 taggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15795784 taggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 15795726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 4285157 - 4285216
Alignment:
Q  115 ttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4285157 ttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgatttttgtccctgt 4285216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 35988854 - 35988911
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35988854 aggcttaaatatgcaaaccgtccctgtaatttgggctcattttgattttcgtccctgt 35988911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 30380904 - 30380971
Alignment:
Q  107 aatagaatttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  30380904 aatagaatcaaggcttaaatatgcaaactgcccctgtaatttgggctcattttgatttttgtccctgt 30380971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 31023587 - 31023643
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  31023587 ggcttaaatatgcaaactgtccttgtaatttgggctcattttgattttcgtctctgt 31023643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 30381635 - 30381577
Alignment:
Q  116 taggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||    
T  30381635 taggcttaaatatgcaaaccgtccctgtaatttgggttcattttgattttcatccctgt 30381577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 35989638 - 35989585
Alignment:
Q  121 ttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  35989638 ttaaatatgcaaaccgtccctgtaatttgggctaattttgattttcgtccctgt 35989585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 31024388 - 31024332
Alignment:
Q  114 tttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  31024388 tttaggattaaatatgcaaaccgtccctgtaatttgggctcattttgatttttgtcc 31024332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 4285791 - 4285734
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||| || ||||||||    
T  4285791 aggcttaaatatgtaaaccgtccctgtaatttgggctcattttgatatttgtccctgt 4285734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 2046039 - 2046097
Alignment:
Q  112 aatttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||||||||    ||||||||||| ||||||||| ||||||||||||||    
T  2046039 aatttaggcttaaatatgcaaac----cctgtaatttgagctcattttaattttcgtccctgt 2046097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 2320844 - 2320791
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    ||||||||||||||||  ||||||||||||||| || | |||||||||||||||    
T  2320844 aggcttaaatatgcaatttgtccctgtaatttgagcgcgttttgattttcgtcc 2320791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 8894733 - 8894676
Alignment:
Q  112 aatttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtc 169  Q
    ||||||||||||||||||||| ||||| ||||||||||| | | ||||| ||||||||    
T  8894733 aatttaggcttaaatatgcaatctgtctctgtaatttggacgcgttttggttttcgtc 8894676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 23911912 - 23911969
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||| |||||| ||||||| || |||||||||||| || |||||    
T  23911912 aggcttaaatatgcaaaccgtccctttaatttgagcgcattttgatttttgttcctgt 23911969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 23912248 - 23912195
Alignment:
Q  121 ttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||| ||||||||||||||  | |||||| ||||||||||||||    
T  23912248 ttaaatatgcaaaccgtccctgtaatttgaacgcatttttattttcgtccctgt 23912195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 24052467 - 24052414
Alignment:
Q  121 ttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||  |||||||||||||||| | | |||||||||||||||||||    
T  24052467 ttaaatatgcaatttgtccctgtaatttggacgcgttttgattttcgtccctgt 24052414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 37376424 - 37376368
Alignment:
Q  114 tttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    ||||||||||||||||||| | ||||| ||||||||| | | |||||||||||||||    
T  37376424 tttaggcttaaatatgcaatccgtcccagtaatttggacgcgttttgattttcgtcc 37376368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 16161993 - 16161935
Alignment:
Q  115 ttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||||| |||  ||||||||| ||  ||||||||||||||||||||    
T  16161993 ttaggcttaaatatgcaaaccgtca-tgtaatttgagcgtattttgattttcgtccctgt 16161935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 150
Target Start/End: Complemental strand, 2046772 - 2046743
Alignment:
Q  121 ttaaatatgcaaactgtccctgtaatttgg 150  Q
    ||||||||||||||||||||||||||||||    
T  2046772 ttaaatatgcaaactgtccctgtaatttgg 2046743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 7600725 - 7600778
Alignment:
Q  121 ttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||  ||| |||||||||| |  |||||||||||||||||||||    
T  7600725 ttaaatatgcaaatcgtctctgtaatttgagtgcattttgattttcgtccctgt 7600778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 7601081 - 7601028
Alignment:
Q  121 ttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||| ||||  |||||||||||||| || ||||||||||||||| |||||    
T  7601081 ttaaatatacaaatcgtccctgtaatttgagcgcattttgattttcgttcctgt 7601028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 16182662 - 16182617
Alignment:
Q  105 ataatagaatttaggcttaaatatgcaaactgtccctgtaatttgg 150  Q
    |||||| |||||||||||||||||| ||| ||||||| ||||||||    
T  16182662 ataataaaatttaggcttaaatatgtaaattgtccctataatttgg 16182617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 27884632 - 27884576
Alignment:
Q  114 tttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    ||||||||||||||||||| | ||||| ||||||| | | | |||||||||||||||    
T  27884632 tttaggcttaaatatgcaatccgtcccagtaatttagacgcgttttgattttcgtcc 27884576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 35086800 - 35086848
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttc 166  Q
    ||||||||||||||  ||||||||||||||||| | | |||||||||||    
T  35086800 ggcttaaatatgcattctgtccctgtaatttggacgcgttttgattttc 35086848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 35151581 - 35151629
Alignment:
Q  120 cttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgt 168  Q
    |||||||||||||  ||||||||||||||| || | |||||||||||||    
T  35151581 cttaaatatgcaatttgtccctgtaatttgagcgcgttttgattttcgt 35151629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 24558839 - 24558896
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24558839 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 24558896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 21716439 - 21716496
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21716439 aggcttaaatatgcaaaccgtccctgtaatttgggctcattttgattttcgtccctgt 21716496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 24559611 - 24559555
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24559611 ggcttaaatatgcaaaccgtccctgtaatttgggctcattttgattttcgtccctgt 24559555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 28917166 - 28917108
Alignment:
Q  116 taggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||    
T  28917166 taggcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgt 28917108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 2238882 - 2238825
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||    
T  2238882 aggcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgt 2238825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 9276828 - 9276881
Alignment:
Q  121 ttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||||| ||||||||| || |||||||||||||||||||||    
T  9276828 ttaaatatgcaaactgtccttgtaatttgagcgcattttgattttcgtccctgt 9276881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 21720258 - 21720201
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||| |||||||||||||  | ||||||||||||||||||||||    
T  21720258 aggcttaaatatgcaaaccgtccctgtaatttaagttcattttgattttcgtccctgt 21720201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 28916285 - 28916341
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||| ||||||||||||||| |  ||||||||||||||||||||    
T  28916285 ggcttaaatatgcaaaccgtccctgtaatttggacgaattttgattttcgtccctgt 28916341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 29090886 - 29090946
Alignment:
Q  114 tttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||| |||||||||||||||| |||||||||||||| ||  ||||||||||||||||||||    
T  29090886 tttacgcttaaatatgcaaaccgtccctgtaatttgagcgaattttgattttcgtccctgt 29090946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 9277189 - 9277140
Alignment:
Q  116 taggcttaaatatgcaaactgtccctgtaatttgggctcattttgatttt 165  Q
    |||||||||||||||||||||||||| ||||||| || ||||||||||||    
T  9277189 taggcttaaatatgcaaactgtccctctaatttgagcgcattttgatttt 9277140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 2237982 - 2238034
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    ||||||||||||||||| ||||||||||||||| |  ||||||||||||||||    
T  2237982 ggcttaaatatgcaaaccgtccctgtaatttggacgaattttgattttcgtcc 2238034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 3150279 - 3150227
Alignment:
Q  122 taaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||| |||||||||||||| || ||||||||||||| |||||||    
T  3150279 taaatatgcaaaccgtccctgtaatttgagcgcattttgattttcatccctgt 3150227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 35421019 - 35421073
Alignment:
Q  115 ttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtc 169  Q
    ||||||||||||||| || ||||||||||||||||| | | ||||||||||||||    
T  35421019 ttaggcttaaatatgtaatctgtccctgtaatttggccgcgttttgattttcgtc 35421073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 3149918 - 3149975
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||| |||| ||||||||| || |||||||| |||| |||||||    
T  3149918 aggcttaaatatgcaaaccgtccttgtaatttgagcgcattttgaatttcatccctgt 3149975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 41916900 - 41916956
Alignment:
Q  114 tttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    ||||||||||||||||||| | ||||| ||||||||| | | |||||||||||||||    
T  41916900 tttaggcttaaatatgcaatccgtcccagtaatttggacgcgttttgattttcgtcc 41916956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 5429047 - 5429105
Alignment:
Q  116 taggcttaaatatgcaaactgtccctgtaatttgggctca-ttttgattttcgtccctgt 174  Q
    |||||||||||||| ||| |||||||||||||| || ||| |||||||||||||||||||    
T  5429047 taggcttaaatatgaaaattgtccctgtaattt-ggttcagttttgattttcgtccctgt 5429105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 29359287 - 29359338
Alignment:
Q  119 gcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||||||||||||| | ||||||||||||||| | | |||||||||||||||    
T  29359287 gcttaaatatgcaatccgtccctgtaatttggacgcgttttgattttcgtcc 29359338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 80608 - 80661
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||||||||||||||| |  |||||||||||||| | | |||||||||||||||    
T  80608 aggcttaaatatgcaatccatccctgtaatttggacgcgttttgattttcgtcc 80661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 46906863 - 46906923
Alignment:
Q  114 tttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46906863 tttaggcttaaatatgcaaactgtccctgtagtttgggctcattttgattttcgtccctgt 46906923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 20289649 - 20289593
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20289649 ggcttaaatatgcaaaccgtccctgtaatttgggctcattttgattttcgtccctgt 20289593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 35325824 - 35325768
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35325824 ggcttaaatatgcaaactgtccctgtaatttgggcgcattttgattttcgtccctgt 35325768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 26051467 - 26051526
Alignment:
Q  115 ttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  26051467 ttaggcttaaatatgcaaattgtccttgtaatttgggctcattttgattttcgtccctgt 26051526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 3990909 - 3990848
Alignment:
Q  113 atttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  3990909 atttaggtttaaatatgcaaaccgtccctgtaatttgggctaattttgattttcgtccctgt 3990848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 26052232 - 26052179
Alignment:
Q  121 ttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26052232 ttaaatatgcaaaccgtccctgtaatttgggctcattttgattttcgtccctgt 26052179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 25166806 - 25166749
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||    
T  25166806 aggcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgt 25166749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 54600136 - 54600189
Alignment:
Q  121 ttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  54600136 ttaaatatgcaaaccgtccctgtaatttgggctaattttgattttcgtccctgt 54600189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 12216093 - 12216145
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtc 169  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  12216093 aggcttaaatatgcaaactgtccccgtaatttgggcgcattttgattttcgtc 12216145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 25165899 - 25165955
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||    
T  25165899 ggcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgt 25165955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 35324996 - 35325052
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||  |||||||||||||||| |||||||||||||||||||||    
T  35324996 ggcttaaatatgcaaaccatccctgtaatttgggcacattttgattttcgtccctgt 35325052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 3990116 - 3990167
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgt 168  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  3990116 aggcttaaatatgcaaaccgttcctgtaatttgggctcattttgattttcgt 3990167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 1984842 - 1984898
Alignment:
Q  114 tttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||||||||||||||||||   ||||||||||||||||| |||||||||||||||||    
T  1984842 tttaggcttaaatatgcaattcgtccctgtaatttgggcccattttgattttcgtcc 1984898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 12216900 - 12216851
Alignment:
Q  121 ttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||||||||    
T  12216900 ttaaatatacaaaccgtccctgtaatttgggcgcattttgattttcgtcc 12216851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 9598330 - 9598280
Alignment:
Q  116 taggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttc 166  Q
    ||||||||||||||||  ||||||||||||||||||| | |||||||||||    
T  9598330 taggcttaaatatgcattctgtccctgtaatttgggcgcgttttgattttc 9598280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 39451969 - 39452022
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||||||||||||||| | ||||||||||||||| |  ||||||||||||||||    
T  39451969 aggcttaaatatgcaatccgtccctgtaatttggacaaattttgattttcgtcc 39452022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 37737669 - 37737617
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||||||||||||||  |||||||||||||||| | | |||||||||||||||    
T  37737669 ggcttaaatatgcaatttgtccctgtaatttggacgcgttttgattttcgtcc 37737617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 44527126 - 44527190
Alignment:
Q  105 ataatagaatttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtc 169  Q
    |||||| || |||||||||||||||||| | |||| |||||||||| | | ||||||||||||||    
T  44527126 ataatataaattaggcttaaatatgcaatccgtccttgtaatttggacgcgttttgattttcgtc 44527190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 4996937 - 4996899
Alignment:
Q  136 gtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  4996937 gtccctgtaatttgggctcgttttgattttcgtcactgt 4996899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 15951556 - 15951518
Alignment:
Q  136 gtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  15951556 gtccctgtaatttgggcccgttttgattttcgtccctgt 15951518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 44707591 - 44707553
Alignment:
Q  136 gtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  44707591 gtccctgtaatttggacccattttgattttcgtccctgt 44707553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 9175802 - 9175749
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||||||||||||||| | |||| |||||||||| | | |||||||||||||||    
T  9175802 aggcttaaatatgcaatccgtccttgtaatttggacgcgttttgattttcgtcc 9175749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 52935685 - 52935738
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||||||||||||||| | ||||||||||||| | | | |||||||||||||||    
T  52935685 aggcttaaatatgcaatccgtccctgtaatttcgacgcgttttgattttcgtcc 52935738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 37921080 - 37921132
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||||||||||| ||   ||||||||||||| ||| |||||||||||||||||    
T  37921080 ggcttaaatatgaaattcgtccctgtaatttaggcgcattttgattttcgtcc 37921132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0765 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 416 - 360
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  416 ggcttaaatatgcaaaccgtccctgtaatttgggctcattttgattttcgtccctgt 360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 6160512 - 6160454
Alignment:
Q  116 taggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6160512 taggtttaaatatgcaaactgtccctgtaatttggactcattttgattttcgtccctgt 6160454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 9699221 - 9699159
Alignment:
Q  112 aatttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  9699221 aatttaggtttaaatatgcaaaccgtccctgtaatttgggctaattttgattttcgtccctgt 9699159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 24051251 - 24051311
Alignment:
Q  114 tttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||    
T  24051251 tttaggcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgt 24051311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 34729938 - 34729994
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  34729938 ggcttaaatatgcaaattgtccctgtaaattgggctcattttgattttcgtccctgt 34729994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 9698448 - 9698505
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||    
T  9698448 aggcttaaatatgcaaaccgtccctttaatttgggttcattttgattttcgtccctgt 9698505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 28302224 - 28302171
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  28302224 aggcttaaatatgcaaaccgtccctgtaatttgggctgattttgattttcgtcc 28302171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 28509849 - 28509902
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  28509849 aggcttaaatatgcaaaccgtccctgtaatttgggctgattttgattttcgtcc 28509902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 29979284 - 29979228
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||    
T  29979284 ggcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgt 29979228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 22352959 - 22353017
Alignment:
Q  116 taggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||||| |||||| ||||||| || |||||||||||||||||||||    
T  22352959 taggcttaaatatgcaaaccgtccctataatttgagcgcattttgattttcgtccctgt 22353017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 6159753 - 6159810
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||| |||||||||||||||| | ||||||||||||||| ||||    
T  6159753 aggcttaaatatgcaaaccgtccctgtaatttgggtttattttgattttcgtctctgt 6159810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 22353325 - 22353272
Alignment:
Q  121 ttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||| |||||||||||||| || |||||||||||||||||||||    
T  22353325 ttaaatatgcaaaccgtccctgtaatttgagcgcattttgattttcgtccctgt 22353272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 24052053 - 24052001
Alignment:
Q  119 gcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccc 171  Q
    |||||||||||||||| |||||||||||||||||  |||||||||||||||||    
T  24052053 gcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccc 24052001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 29843739 - 29843792
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||||||||||||||  | |||||||||||||| |||| |||||||||||||||    
T  29843739 aggcttaaatatgcattccgtccctgtaatttgagctcgttttgattttcgtcc 29843792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 174
Target Start/End: Original strand, 476938 - 476977
Alignment:
Q  135 tgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  476938 tgtccctgtaatttgggcccgttttgattttcgtccctgt 476977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 18493758 - 18493705
Alignment:
Q  121 ttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||| ||  |||||||||| || |||||| ||||||||||||||    
T  18493758 ttaaatatgcaaaccgtttctgtaatttgagcgcattttaattttcgtccctgt 18493705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 21634417 - 21634364
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||||||||||||||| | |||||| |||||||| | | |||||||||||||||    
T  21634417 aggcttaaatatgcaatccgtccctataatttggacgcgttttgattttcgtcc 21634364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 52502407 - 52502461
Alignment:
Q  120 cttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52502407 cttaaatatgcaaaccgtccctgtaatttgggctcattttgattttcgtccctgt 52502461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 52503565 - 52503508
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  52503565 aggcttaaatatgcaaactgtccctgtaatttggactcattttgattttcgtctctgt 52503508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 15807655 - 15807712
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||    
T  15807655 aggcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgt 15807712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 35022508 - 35022460
Alignment:
Q  121 ttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtc 169  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35022508 ttaaatatgcaaaccgtccctgtaatttgggctcattttgattttcgtc 35022460  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 47864489 - 47864545
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||    
T  47864489 ggcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgt 47864545  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 47865353 - 47865297
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||    
T  47865353 ggcttaaatatgcaaaccgtcactgtaatttgggctgattttgattttcgtccctgt 47865297  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 35021799 - 35021853
Alignment:
Q  116 taggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  35021799 taggtttaaatatgcaaactgttcctgtaatttgggctaattttgattttcgtcc 35021853  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 47848888 - 47848834
Alignment:
Q  116 taggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||| |||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  47848888 taggtttaaatatgcaaaccgtccctgtaatttgggcgcattttgattttcgtcc 47848834  T

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Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 52477641 - 52477701
Alignment:
Q  114 tttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||||||| |||||||||||||| |   ||||||||||||||||||||    
T  52477641 tttaggcttaaatatgcaaaccgtccctgtaatttgagtgaattttgattttcgtccctgt 52477701  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 15808539 - 15808484
Alignment:
Q  119 gcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||| |||||||||||||| ||  ||||||||||||||||||||    
T  15808539 gcttaaatatgcaaacggtccctgtaatttgagcgaattttgattttcgtccctgt 15808484  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 4900256 - 4900309
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||||||||||||||| | ||||||||||||||||| | |||||||||||||||    
T  4900256 aggcttaaatatgcaatccgtccctgtaatttgggcgcgttttgattttcgtcc 4900309  T

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Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 6480582 - 6480529
Alignment:
Q  121 ttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||||||||||||||  || ||||||||||||| |||||||    
T  6480582 ttaaatatgcaaactgtccctgtaatttaagcgcattttgattttcatccctgt 6480529  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 7401973 - 7402031
Alignment:
Q  115 ttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||||| | ||||||| ||||||| | | |||||||||||||||||||    
T  7401973 ttaggcttaaatatgcaatccgtccctg-aatttggacgcgttttgattttcgtccctgt 7402031  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 50064730 - 50064679
Alignment:
Q  119 gcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    ||||||||||||||   ||||||||||||||||| | |||||||||||||||    
T  50064730 gcttaaatatgcaattcgtccctgtaatttgggcgcgttttgattttcgtcc 50064679  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 29145298 - 29145240
Alignment:
Q  116 taggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||  ||  ||||||||||||||| |  ||||||||||||||||||||    
T  29145298 taggcttaaatatgataatcgtccctgtaatttggtcaaattttgattttcgtccctgt 29145240  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 38657845 - 38657883
Alignment:
Q  136 gtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||||||| || |||||||||||||||||||    
T  38657845 gtccctgtaatttgggttcgttttgattttcgtccctgt 38657883  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 41266434 - 41266496
Alignment:
Q  112 aatttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||| |||||||||  ||  |||||||||||||| || |||||||| ||||||||||||    
T  41266434 aatttaggtttaaatatgacaatcgtccctgtaatttgagcgcattttgactttcgtccctgt 41266496  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 53535640 - 53535602
Alignment:
Q  136 gtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  53535640 gtccctgtaatttgggcccgttttgattttcgtccctgt 53535602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 7402948 - 7402893
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||| | |||| |||||||||| | | |||||||||||||||||||    
T  7402948 ggcttaaatatgcaatccgtcc-tgtaatttggacgcgttttgattttcgtccctgt 7402893  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 55592582 - 55592634
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    |||| |||||||||| ||||||||||||||||| |   |||||||||||||||    
T  55592582 ggctgaaatatgcaatctgtccctgtaatttggacgtgttttgattttcgtcc 55592634  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 55593442 - 55593390
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    ||||||||||||||| | ||||||||||||||| | | |||| ||||||||||    
T  55593442 ggcttaaatatgcaatccgtccctgtaatttggacgcgttttcattttcgtcc 55593390  T

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Target: scaffold0817 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0817
Description:

Target: scaffold0817; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 5012 - 5065
Alignment:
Q  121 ttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5012 ttaaatatgcaaaatgtccctgtaatttgggctcattttgattttcgtccctgt 5065  T

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Target: scaffold0141 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 10302 - 10362
Alignment:
Q  114 tttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||    
T  10302 tttaggcttaaatatgcaaaccgtccctgtaatttgggcgaattttgattttcgtccctgt 10362  T

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Target: scaffold0141; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 11197 - 11141
Alignment:
Q  118 ggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    ||||||||||| ||||| |||||||||||||||||  ||||||||||||||||||||    
T  11197 ggcttaaatatacaaaccgtccctgtaatttgggcgaattttgattttcgtccctgt 11141  T

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Target: scaffold0903 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0903
Description:

Target: scaffold0903; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 246 - 303
Alignment:
Q  117 aggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtccctgt 174  Q
    |||||||||||| ||||| |||| |||||||| | |||||||||||||||||||||||    
T  246 aggcttaaatatacaaaccgtccttgtaatttagactcattttgattttcgtccctgt 303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0518 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0518
Description:

Target: scaffold0518; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 1076 - 1131
Alignment:
Q  114 tttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtc 169  Q
    |||||||||||||||||||   ||||||||||||||||| | ||||||||||||||    
T  1076 tttaggcttaaatatgcaattcgtccctgtaatttgggcgcgttttgattttcgtc 1131  T

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Target: scaffold0090 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 45675 - 45731
Alignment:
Q  114 tttaggcttaaatatgcaaactgtccctgtaatttgggctcattttgattttcgtcc 170  Q
    ||||||||||||||||||| | ||||| ||||||||| | | |||| ||||||||||    
T  45675 tttaggcttaaatatgcaatccgtcccagtaatttggacgcgttttaattttcgtcc 45731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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