View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6613_low_1 (Length: 533)

Name: NF6613_low_1
Description: NF6613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6613_low_1
NF6613_low_1
[»] chr8 (14 HSPs)
chr8 (161-325)||(17683697-17683861)
chr8 (161-325)||(17664541-17664705)
chr8 (180-325)||(39837482-39837627)
chr8 (191-327)||(4839713-4839849)
chr8 (190-325)||(17973565-17973700)
chr8 (196-326)||(39845541-39845671)
chr8 (180-325)||(30938282-30938427)
chr8 (190-325)||(25579742-25579877)
chr8 (180-325)||(1406993-1407138)
chr8 (197-325)||(26873541-26873669)
chr8 (197-325)||(26875991-26876119)
chr8 (13-64)||(17664393-17664444)
chr8 (13-64)||(17683549-17683600)
chr8 (231-325)||(4582204-4582298)
[»] chr2 (24 HSPs)
chr2 (161-327)||(20372214-20372380)
chr2 (161-325)||(20621518-20621682)
chr2 (180-325)||(14582925-14583070)
chr2 (180-325)||(15944477-15944622)
chr2 (180-325)||(15952992-15953137)
chr2 (180-325)||(35138593-35138738)
chr2 (180-325)||(35146929-35147074)
chr2 (180-325)||(41233764-41233909)
chr2 (180-325)||(38168277-38168422)
chr2 (180-325)||(42565849-42565994)
chr2 (180-325)||(42574473-42574618)
chr2 (180-297)||(35037884-35038001)
chr2 (216-325)||(44372705-44372814)
chr2 (216-325)||(44388616-44388725)
chr2 (231-325)||(17687369-17687463)
chr2 (214-325)||(25483601-25483712)
chr2 (214-325)||(25491207-25491318)
chr2 (13-64)||(20621788-20621839)
chr2 (200-325)||(35303737-35303862)
chr2 (231-326)||(27606616-27606710)
chr2 (231-325)||(24285696-24285790)
chr2 (231-325)||(42249426-42249520)
chr2 (199-276)||(18989312-18989389)
chr2 (231-325)||(34070575-34070669)
[»] chr5 (20 HSPs)
chr5 (325-519)||(22042553-22042746)
chr5 (179-325)||(29186197-29186343)
chr5 (190-326)||(20398565-20398701)
chr5 (190-325)||(20372843-20372978)
chr5 (180-325)||(1728079-1728224)
chr5 (180-326)||(43597966-43598112)
chr5 (180-326)||(43603458-43603604)
chr5 (180-326)||(43608950-43609096)
chr5 (180-325)||(24956766-24956911)
chr5 (180-325)||(24965229-24965374)
chr5 (190-325)||(23350006-23350141)
chr5 (180-326)||(28843939-28844085)
chr5 (180-325)||(28852550-28852695)
chr5 (193-325)||(31410890-31411022)
chr5 (198-325)||(31421789-31421916)
chr5 (214-325)||(19223555-19223666)
chr5 (200-246)||(17638318-17638364)
chr5 (200-246)||(23028007-23028053)
chr5 (201-247)||(23037923-23037969)
chr5 (13-59)||(19223811-19223857)
[»] scaffold0156 (1 HSPs)
scaffold0156 (190-325)||(35286-35421)
[»] chr7 (12 HSPs)
chr7 (180-325)||(10439937-10440082)
chr7 (180-325)||(4952317-4952462)
chr7 (180-325)||(13831500-13831645)
chr7 (180-325)||(13839531-13839676)
chr7 (180-325)||(18304312-18304457)
chr7 (180-325)||(12978455-12978600)
chr7 (200-325)||(21662962-21663088)
chr7 (231-325)||(30244775-30244869)
chr7 (264-325)||(4941581-4941642)
chr7 (231-325)||(30255413-30255506)
chr7 (199-254)||(1955691-1955746)
chr7 (231-325)||(30245568-30245662)
[»] chr4 (14 HSPs)
chr4 (180-325)||(27343611-27343756)
chr4 (180-325)||(4523600-4523745)
chr4 (180-325)||(12996476-12996621)
chr4 (190-325)||(8094212-8094347)
chr4 (190-325)||(8103018-8103153)
chr4 (179-325)||(21532224-21532369)
chr4 (197-325)||(52295604-52295732)
chr4 (200-325)||(12428418-12428543)
chr4 (199-325)||(33188766-33188891)
chr4 (252-325)||(10638328-10638400)
chr4 (180-225)||(10638406-10638451)
chr4 (231-270)||(12402907-12402946)
chr4 (200-325)||(3424331-3424454)
chr4 (201-246)||(25249599-25249644)
[»] chr3 (23 HSPs)
chr3 (180-325)||(8154564-8154709)
chr3 (180-326)||(50824351-50824497)
chr3 (180-326)||(50851363-50851509)
chr3 (180-325)||(41006556-41006701)
chr3 (180-325)||(41015336-41015481)
chr3 (190-325)||(14538534-14538670)
chr3 (179-326)||(28470137-28470283)
chr3 (180-325)||(27341254-27341400)
chr3 (180-325)||(2211239-2211384)
chr3 (190-325)||(9525364-9525499)
chr3 (190-325)||(9555038-9555173)
chr3 (200-325)||(17933655-17933780)
chr3 (200-325)||(17919199-17919324)
chr3 (199-323)||(43470492-43470615)
chr3 (200-325)||(16816145-16816268)
chr3 (261-325)||(17628265-17628329)
chr3 (231-325)||(21186747-21186841)
chr3 (231-321)||(18349560-18349650)
chr3 (230-325)||(18039011-18039106)
chr3 (231-325)||(30447-30541)
chr3 (231-325)||(8197667-8197761)
chr3 (199-246)||(31276593-31276640)
chr3 (199-240)||(16288692-16288733)
[»] chr1 (14 HSPs)
chr1 (180-325)||(3432810-3432955)
chr1 (180-325)||(31539954-31540099)
chr1 (180-325)||(31548523-31548668)
chr1 (190-325)||(32137684-32137819)
chr1 (180-325)||(35103984-35104129)
chr1 (190-325)||(41746622-41746758)
chr1 (200-325)||(29221429-29221553)
chr1 (200-325)||(44320132-44320257)
chr1 (200-252)||(28457629-28457681)
chr1 (201-283)||(51058330-51058411)
chr1 (231-325)||(21498869-21498963)
chr1 (200-253)||(8241438-8241491)
chr1 (202-246)||(13462775-13462819)
chr1 (201-246)||(22460026-22460071)
[»] chr6 (17 HSPs)
chr6 (190-325)||(33298085-33298219)
chr6 (196-325)||(15391547-15391676)
chr6 (180-326)||(5004060-5004206)
chr6 (190-325)||(13825703-13825838)
chr6 (190-325)||(30824459-30824594)
chr6 (180-326)||(35091596-35091742)
chr6 (190-326)||(25550294-25550430)
chr6 (180-325)||(11279837-11279982)
chr6 (197-325)||(5994699-5994827)
chr6 (180-323)||(25991852-25991995)
chr6 (180-325)||(25506461-25506606)
chr6 (180-325)||(23925335-23925481)
chr6 (189-266)||(26526631-26526708)
chr6 (234-325)||(13490193-13490284)
chr6 (273-326)||(5489132-5489185)
chr6 (233-325)||(11053702-11053794)
chr6 (199-258)||(14894939-14894998)
[»] scaffold0111 (1 HSPs)
scaffold0111 (180-325)||(33035-33180)
[»] scaffold0209 (1 HSPs)
scaffold0209 (180-325)||(4-149)
[»] scaffold0083 (1 HSPs)
scaffold0083 (197-325)||(15813-15941)
[»] scaffold0002 (1 HSPs)
scaffold0002 (190-325)||(121228-121363)
[»] scaffold0497 (1 HSPs)
scaffold0497 (199-325)||(10993-11119)
[»] scaffold0632 (1 HSPs)
scaffold0632 (197-325)||(4390-4518)
[»] scaffold0016 (1 HSPs)
scaffold0016 (190-325)||(23464-23600)
[»] scaffold0173 (1 HSPs)
scaffold0173 (190-325)||(859-994)
[»] scaffold0039 (1 HSPs)
scaffold0039 (214-325)||(40787-40898)
[»] scaffold0431 (1 HSPs)
scaffold0431 (200-325)||(139-264)
[»] scaffold0170 (1 HSPs)
scaffold0170 (199-325)||(7129-7255)
[»] scaffold0222 (1 HSPs)
scaffold0222 (200-325)||(20422-20547)
[»] scaffold0027 (2 HSPs)
scaffold0027 (179-257)||(65622-65701)
scaffold0027 (13-53)||(65470-65510)
[»] scaffold0315 (1 HSPs)
scaffold0315 (199-255)||(10595-10651)
[»] scaffold0015 (1 HSPs)
scaffold0015 (230-325)||(192528-192623)
[»] scaffold0290 (1 HSPs)
scaffold0290 (199-276)||(15760-15837)
[»] scaffold0991 (1 HSPs)
scaffold0991 (232-325)||(345-438)
[»] scaffold0048 (2 HSPs)
scaffold0048 (192-225)||(7587-7620)
scaffold0048 (253-326)||(7622-7695)
[»] scaffold0044 (2 HSPs)
scaffold0044 (232-325)||(81758-81851)
scaffold0044 (231-325)||(65509-65603)
[»] scaffold0007 (1 HSPs)
scaffold0007 (199-246)||(61371-61418)
[»] scaffold0863 (1 HSPs)
scaffold0863 (231-325)||(343-437)
[»] scaffold1380 (1 HSPs)
scaffold1380 (199-240)||(556-597)


Alignment Details
Target: chr8 (Bit Score: 133; Significance: 6e-69; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 161 - 325
Target Start/End: Original strand, 17683697 - 17683861
Alignment:
Q  161 gaaaataatgggaaagagaagggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattccc 260  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||    
T  17683697 gaaaataatgggaaagagaagggtccgactcggaataaaaaatgaggtacttcaaagtaacttctttgtcaaaatttcgtctgaaacgacgaaaattccc 17683796  T
Q  261 gactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  17683797 gactctaaaaatacgaataaaatgggcaaggatagagaaaagtggtcaaaatttggggtatgaca 17683861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 161 - 325
Target Start/End: Original strand, 17664541 - 17664705
Alignment:
Q  161 gaaaataatgggaaagagaagggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattccc 260  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||| ||||||||||    
T  17664541 gaaaataatgggaaagagaagggtccgactcggaataaaaaatgaggtacttcaaagtaacttctttgtcaaaatttcgtctgaaacgatgaaaattccc 17664640  T
Q  261 gactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  17664641 gactctaaaaatacgaataaaatgggcaaggatagagaaaagtggtcaaaatttggggtatgaca 17664705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 39837482 - 39837627
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39837482 agggtccgactcggaataaaaaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 39837581  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||| ||||||||||||||||| |||||||||    
T  39837582 aaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 39837627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 191 - 327
Target Start/End: Original strand, 4839713 - 4839849
Alignment:
Q  191 cggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaag 290  Q
    |||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4839713 cggaatcaaaaatgaggtacttcaaagtaacttctttgtcgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggtaag 4839812  T
Q  291 gatagagaaaagtggtcaaaatttgaggtatgacata 327  Q
     ||||||||||| |||||||||||| |||||||||||    
T  4839813 aatagagaaaagcggtcaaaatttggggtatgacata 4839849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 190 - 325
Target Start/End: Complemental strand, 17973700 - 17973565
Alignment:
Q  190 tcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaa 289  Q
    |||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  17973700 tcggaataaaaaatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaa 17973601  T
Q  290 ggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    | |||||||||||||||||||||||| |||||||||    
T  17973600 gaatagagaaaagtggtcaaaatttggggtatgaca 17973565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 196 - 326
Target Start/End: Original strand, 39845541 - 39845671
Alignment:
Q  196 taaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatag 295  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||    
T  39845541 taaaaaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaatag 39845640  T
Q  296 agaaaagtggtcaaaatttgaggtatgacat 326  Q
    || ||||||||||||||||| ||||||||||    
T  39845641 aggaaagtggtcaaaatttggggtatgacat 39845671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 180 - 325
Target Start/End: Complemental strand, 30938427 - 30938282
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||| ||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30938427 agggtccgactcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 30938328  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||||||||||||||||||||| |||||||||    
T  30938327 aaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 30938282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 25579742 - 25579877
Alignment:
Q  190 tcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaa 289  Q
    |||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  25579742 tcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaa 25579841  T
Q  290 ggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    | ||||| |||||||||||||||||  |||||||||    
T  25579842 gaatagataaaagtggtcaaaatttagggtatgaca 25579877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 1406993 - 1407138
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  1406993 agggtccgactcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattcacaactttaaaaatacgaata 1407092  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||| ||||||||||||||||| |||||||||    
T  1407093 aaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 1407138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 197 - 325
Target Start/End: Original strand, 26873541 - 26873669
Alignment:
Q  197 aaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggataga 296  Q
    ||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| || ||| |||||    
T  26873541 aaaaaataaggtactttaaagtaacctctttgtcgaaatttcgtctgaaacgacgaaaatttccgacattacaaatacgaataaaatgggtaagaataga 26873640  T
Q  297 gaaaagtggtcaaaatttgaggtatgaca 325  Q
    ||||||||||||||||||| |||||||||    
T  26873641 gaaaagtggtcaaaatttggggtatgaca 26873669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 197 - 325
Target Start/End: Original strand, 26875991 - 26876119
Alignment:
Q  197 aaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggataga 296  Q
    ||||||||||||| || |||||||||||||||| |||||||||||||||||||| |||||| ||||| ||||||||||||||||||| || ||| |||||    
T  26875991 aaaaaatgaggtattttaaagtaacctctttgtcgaaatttcgtctgaaacgacaaaaatttccgacattaaaaatacgaataaaatgggtaagaataga 26876090  T
Q  297 gaaaagtggtcaaaatttgaggtatgaca 325  Q
    ||||||||||||||||||| |||||||||    
T  26876091 gaaaagtggtcaaaatttggggtatgaca 26876119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 17664393 - 17664444
Alignment:
Q  13 gaaatttggaccactgccgaaaaccttcggacttattgacaacattgtacag 64  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17664393 gaaatttggaccactgcagaaaaccttcggacttattgacaacattgtacag 17664444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 17683549 - 17683600
Alignment:
Q  13 gaaatttggaccactgccgaaaaccttcggacttattgacaacattgtacag 64  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17683549 gaaatttggaccactgcagaaaaccttcggacttattgacaacattgtacag 17683600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 4582298 - 4582204
Alignment:
Q  231 gaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||||||||||| ||| |||| | ||| |||  ||||||| || ||| |||||  | ||  ||||||||||||||||||||||| ||||||||||    
T  4582298 gaaatttcgtctaaaatgacggacatttccggttttaaaagtatgaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttaaggtatgaca 4582204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 6e-66; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 161 - 327
Target Start/End: Original strand, 20372214 - 20372380
Alignment:
Q  161 gaaaataatgggaaagagaagggtctgattcggaataaaaaa-tgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcc 259  Q
    ||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |    
T  20372214 gaaaataatgggaaagagaagggtccgactcggaataaaaaaatgaggtacttcaaagtaacct-tttgtcgaaatttcgtctgaaacgacgaaaatttc 20372312  T
Q  260 cgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgacata 327  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  20372313 cgactttaaaaatacgaataaaatgggcaaggatagagaaaagtggtcaaaatttggggtatgacata 20372380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 161 - 325
Target Start/End: Complemental strand, 20621682 - 20621518
Alignment:
Q  161 gaaaataatgggaaagagaagggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattccc 260  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||    
T  20621682 gaaaataatgggaaagagaagggtctgactcagaataaaaaatgaggtacttcaaagtaacatctttgtcgaaattttgtctgaaacgacgaaaattccc 20621583  T
Q  261 gactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    ||||| ||||| ||||||||||| || ||| |||||||||||||||||||||||| |||||||||    
T  20621582 gacttcaaaaacacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 20621518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 180 - 325
Target Start/End: Complemental strand, 14583070 - 14582925
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||| ||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14583070 agggtccgactcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 14582971  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||||||||||||||||||||| |||||||||    
T  14582970 aaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 14582925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 15944477 - 15944622
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||| ||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15944477 agggtccgactcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 15944576  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||||||||||||||||||||| |||||||||    
T  15944577 aaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 15944622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 15952992 - 15953137
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||| ||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15952992 agggtccgactcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 15953091  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||||||||||||||||||||| |||||||||    
T  15953092 aaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 15953137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 180 - 325
Target Start/End: Complemental strand, 35138738 - 35138593
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||| ||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35138738 agggtccgactcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 35138639  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||||||||||||||||||||| |||||||||    
T  35138638 aaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 35138593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 180 - 325
Target Start/End: Complemental strand, 35147074 - 35146929
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||| ||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35147074 agggtccgactcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 35146975  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||||||||||||||||||||| |||||||||    
T  35146974 aaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 35146929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 41233764 - 41233909
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||| ||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41233764 agggtccgactcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 41233863  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||||||||||||||||||||| |||||||||    
T  41233864 aaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 41233909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 38168277 - 38168422
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||| ||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38168277 agggtccgactcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 38168376  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| ||||||||||||||||||||||||  ||||||||    
T  38168377 aaatgggtaagaatagagaaaagtggtcaaaatttggagtatgaca 38168422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 42565849 - 42565994
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  42565849 agggtccgactcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattctcaactttaaaaatacgaata 42565948  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||| ||||||||||||||||| |||||||||    
T  42565949 aaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 42565994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 42574473 - 42574618
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  42574473 agggtccgactcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattctcaactttaaaaatacgaata 42574572  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||| ||||||||||||||||| |||||||||    
T  42574573 aaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 42574618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 180 - 297
Target Start/End: Complemental strand, 35038001 - 35037884
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||| |||| |||||||||||||||||||| ||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35038001 agggcctgactcggaataaaaaatgaggtatttcaaagtaacctctctatcgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 35037902  T
Q  280 aaataggcaaggatagag 297  Q
    |||| || ||| ||||||    
T  35037901 aaatgggtaagaatagag 35037884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 216 - 325
Target Start/End: Complemental strand, 44372814 - 44372705
Alignment:
Q  216 agtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttg 315  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || || |||||| ||||||||||||||||||    
T  44372814 agtaacctctttgtcgaaatttcgtcttaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaaagatagaaaaaagtggtcaaaatttg 44372715  T
Q  316 aggtatgaca 325  Q
     |||||||||    
T  44372714 gggtatgaca 44372705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 216 - 325
Target Start/End: Complemental strand, 44388725 - 44388616
Alignment:
Q  216 agtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttg 315  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || || |||||| ||||||||||||||||||    
T  44388725 agtaacctctttgtcgaaatttcgtcttaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaaagatagaaaaaagtggtcaaaatttg 44388626  T
Q  316 aggtatgaca 325  Q
     |||||||||    
T  44388625 gggtatgaca 44388616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 17687369 - 17687463
Alignment:
Q  231 gaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| |||||||||||||||||||||||| |||||||||    
T  17687369 gaaatttcgtctgaaacgacgaaaattcccgactttaaaaatatgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 17687463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 214 - 325
Target Start/End: Complemental strand, 25483712 - 25483601
Alignment:
Q  214 aaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatt 313  Q
    |||||||||||| ||| || ||||||||||||||||||||||||| ||||||||||||||| |||||||| |  ||| ||||||||||||||||||||||    
T  25483712 aaagtaacctctctgtcgagatttcgtctgaaacgacgaaaattctcgactttaaaaatacaaataaaatggataagaatagagaaaagtggtcaaaatt 25483613  T
Q  314 tgaggtatgaca 325  Q
    || |||||||||    
T  25483612 tggggtatgaca 25483601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 214 - 325
Target Start/End: Complemental strand, 25491318 - 25491207
Alignment:
Q  214 aaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatt 313  Q
    |||||||||||| ||| || ||||||||||||||||||||||||| ||||||||||||||| |||||||| |  ||| ||||||||||||||||||||||    
T  25491318 aaagtaacctctctgtcgagatttcgtctgaaacgacgaaaattctcgactttaaaaatacaaataaaatggataagaatagagaaaagtggtcaaaatt 25491219  T
Q  314 tgaggtatgaca 325  Q
    || |||||||||    
T  25491218 tggggtatgaca 25491207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 20621839 - 20621788
Alignment:
Q  13 gaaatttggaccactgccgaaaaccttcggacttattgacaacattgtacag 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20621839 gaaatttggaccactgccgaaaaccttcggacttattgacaacattgtacag 20621788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 200 - 325
Target Start/End: Complemental strand, 35303862 - 35303737
Alignment:
Q  200 aaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaa 299  Q
    ||||||||||||||||| |||||||| ||  |||||||||||||||||||||||| |||  | |||| |||||| ||||||||  || ||    ||||||    
T  35303862 aaatgaggtacttcaaattaacctctctgccgaaatttcgtctgaaacgacgaaatttcttggcttttaaaataagaataaaaggggtaaaatcagagaa 35303763  T
Q  300 aagtggtcaaaatttgaggtatgaca 325  Q
    || | ||||||||||| |||||||||    
T  35303762 aaatagtcaaaatttggggtatgaca 35303737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 231 - 326
Target Start/End: Original strand, 27606616 - 27606710
Alignment:
Q  231 gaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgacat 326  Q
    |||||||||||||| ||||| |||||||||| |||||||| |||||||||||| |  ||  |||||||||||| |||||||||||  |||||||||    
T  27606616 gaaatttcgtctgagacgac-aaaattcccgtctttaaaagtacgaataaaattgataaaaatagagaaaagtagtcaaaatttggagtatgacat 27606710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 24285790 - 24285696
Alignment:
Q  231 gaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||||||||||| |||||||| ||||| ||   ||||||| |||||| |||||  | ||  ||| |||||||||||||||||||| |||||||||    
T  24285790 gaaatttcgtcttaaacgacggaaatttccagttttaaaagtacgaacaaaatgtgtaaaaataaagaaaagtggtcaaaatttggggtatgaca 24285696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 42249426 - 42249520
Alignment:
Q  231 gaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||||||||||| |||||||| | |||  ||| ||||||| ||||||  ||||  | ||  |||||||||||||||||||||||| |||||||||    
T  42249426 gaaatttcgtctaaaacgacggacattttcgattttaaaagtacgaacgaaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgaca 42249520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 199 - 276
Target Start/End: Original strand, 18989312 - 18989389
Alignment:
Q  199 aaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacga 276  Q
    |||||||||||||| |||||||||||| |   | ||||||||||||  |||| |||||||||| ||||||||| ||||    
T  18989312 aaaatgaggtacttgaaagtaacctctctaccgtaatttcgtctgatgcgacaaaaattcccggctttaaaaagacga 18989389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 34070575 - 34070669
Alignment:
Q  231 gaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    ||||||| |||| |||||||| | ||| |||  ||||||| |||||| |||||  | ||  ||||||||||||| |||||||||| |||||||||    
T  34070575 gaaattttgtctaaaacgacggacattaccggttttaaaagtacgaacaaaatgtgtaaaaatagagaaaagtgatcaaaatttggggtatgaca 34070669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 325 - 519
Target Start/End: Complemental strand, 22042746 - 22042553
Alignment:
Q  325 ataactacatcatctttaactactctttccacttgaaatggctggatatcgtgatgtgcttaaaagacaagttctgggaggttttgaaactgtacatctt 424  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||| |||||||||||| |||| ||||||||||||||||||||||||    
T  22042746 ataactacatcatctttaacaactctttccacttcaaatggctggatatcgtgttgtacttaaaagacaaattctaggaggttttgaaactgtacatctt 22042647  T
Q  425 ccatatcaggtattctatattttcagttttcctaactgctaattttattttgttttactactctgcagtgttgttatacttcttcaatgtgcaca 519  Q
    |||||||||||||||||||||||||| |||||||||||||  |    | ||||| |||||||||||| |||||||||||||||||||||||||||    
T  22042646 ccatatcaggtattctatattttcagctttcctaactgct-ctgcactgttgttatactactctgcactgttgttatacttcttcaatgtgcaca 22042553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 179 - 325
Target Start/End: Original strand, 29186197 - 29186343
Alignment:
Q  179 aagggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaat 278  Q
    ||||||| || |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29186197 aagggtccgactcggaataaaaaatgaggcacttcaaagtaacctctttgtcgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaat 29186296  T
Q  279 aaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    ||||| || |||||||||||||||||||||||||||| |||||||||    
T  29186297 aaaatgggtaaggatagagaaaagtggtcaaaatttggggtatgaca 29186343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 190 - 326
Target Start/End: Original strand, 20398565 - 20398701
Alignment:
Q  190 tcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaa 289  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  20398565 tcggaataaaaaatgaggtacttcaaagtaacctctctgtcgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatcggtaa 20398664  T
Q  290 ggatagagaaaagtggtcaaaatttgaggtatgacat 326  Q
    | |||||||||||||||||||||||| ||||||||||    
T  20398665 gaatagagaaaagtggtcaaaatttggggtatgacat 20398701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 20372843 - 20372978
Alignment:
Q  190 tcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaa 289  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  20372843 tcggaataaaaaatgaggtacttcaaagtaacctctctgtcgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatcggtaa 20372942  T
Q  290 ggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    | |||||||||||||||||||||||| |||||||||    
T  20372943 gaatagagaaaagtggtcaaaatttggggtatgaca 20372978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 1728079 - 1728224
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1728079 agggtccgactcggaataaaaaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacggcgaaaattcccgactttaaaaatacgaata 1728178  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||| ||||||||||||||||| |||||||||    
T  1728179 aaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 1728224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 180 - 326
Target Start/End: Original strand, 43597966 - 43598112
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43597966 agggtccgactcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattcccgactttaaaaatacgaata 43598065  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgacat 326  Q
    |||| || ||| |||||| ||||||||||||||||| ||||||||||    
T  43598066 aaatgggtaagaatagaggaaagtggtcaaaatttggggtatgacat 43598112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 180 - 326
Target Start/End: Original strand, 43603458 - 43603604
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43603458 agggtccgactcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattcccgactttaaaaatacgaata 43603557  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgacat 326  Q
    |||| || ||| |||||| ||||||||||||||||| ||||||||||    
T  43603558 aaatgggtaagaatagaggaaagtggtcaaaatttggggtatgacat 43603604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 180 - 326
Target Start/End: Original strand, 43608950 - 43609096
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43608950 agggtccgactcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattcccgactttaaaaatacgaata 43609049  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgacat 326  Q
    |||| || ||| |||||| ||||||||||||||||| ||||||||||    
T  43609050 aaatgggtaagaatagaggaaagtggtcaaaatttggggtatgacat 43609096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 24956766 - 24956911
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||| ||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24956766 agggtccgactcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 24956865  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||||||||||||||||||||| |||||||||    
T  24956866 aaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 24956911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 24965229 - 24965374
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||| ||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24965229 agggtccgactcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 24965328  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||||||||||||||||||||| |||||||||    
T  24965329 aaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 24965374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 23350006 - 23350141
Alignment:
Q  190 tcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaa 289  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||| |||||||||||||||||||||||||||||| || ||    
T  23350006 tcggaataaaaaatgaggtacttcaaagtaacctctttgccgaaatttcgtctgaaatgacgagaattcccgactttaaaaatacgaataaaatgggtaa 23350105  T
Q  290 ggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
      |||||||||| ||||||||||||| |||||||||    
T  23350106 aaatagagaaaaatggtcaaaatttggggtatgaca 23350141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 180 - 326
Target Start/End: Complemental strand, 28844085 - 28843939
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  28844085 agggtccgactcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattctcaactttaaaaatacgaata 28843986  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgacat 326  Q
    |||| || ||| |||||| ||||||||||||||||| ||||||||||    
T  28843985 aaatgggtaagaatagaggaaagtggtcaaaatttggggtatgacat 28843939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 180 - 325
Target Start/End: Complemental strand, 28852695 - 28852550
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  28852695 agggtccgactcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattctcaactttaaaaatacgaata 28852596  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||| ||||||||||||||||| |||||||||    
T  28852595 aaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 28852550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 193 - 325
Target Start/End: Complemental strand, 31411022 - 31410890
Alignment:
Q  193 gaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaagga 292  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||  |||||||||||||||||||||| ||  || |    
T  31411022 gaataaaaaatgaggtacttcaaagtaacctctttgtcgaaatttcgttttaaacgacgaaaattcctaactttaaaaatacgaataaaatgggttagaa 31410923  T
Q  293 tagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||||||| |||||||||||||| |||||||||    
T  31410922 tagagaaatgtggtcaaaatttggggtatgaca 31410890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 198 - 325
Target Start/End: Complemental strand, 31421916 - 31421789
Alignment:
Q  198 aaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagag 297  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| || ||| ||||||    
T  31421916 aaaaatgaggtacttcaaagtaacatctttgtcgaaattttgtctgaaacgacgaaaatttccgacttcaaaaatacgaataaaatgggtaagaatagag 31421817  T
Q  298 aaaagtggtcaaaatttgaggtatgaca 325  Q
    |||||||||||||||||  |||||||||    
T  31421816 aaaagtggtcaaaattttgggtatgaca 31421789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 214 - 325
Target Start/End: Complemental strand, 19223666 - 19223555
Alignment:
Q  214 aaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatt 313  Q
    |||||||||||| ||| || ||||| ||||||||||||| ||||| ||||||||||||||| |||||||| |  ||| ||||||||||||||||||||||    
T  19223666 aaagtaacctctctgtcgagatttcatctgaaacgacgacaattctcgactttaaaaatacaaataaaatggataagaatagagaaaagtggtcaaaatt 19223567  T
Q  314 tgaggtatgaca 325  Q
    || |||||||||    
T  19223566 tggggtatgaca 19223555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 17638364 - 17638318
Alignment:
Q  200 aaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaa 246  Q
    |||||||||||||||||||||||||| ||| |||||||||| |||||    
T  17638364 aaatgaggtacttcaaagtaacctctctgtcgaaatttcgtttgaaa 17638318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 23028007 - 23028053
Alignment:
Q  200 aaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaa 246  Q
    |||||||||||||||||||||||||| ||  ||||||||||||||||    
T  23028007 aaatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaa 23028053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 23037969 - 23037923
Alignment:
Q  201 aatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaac 247  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||||    
T  23037969 aatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaac 23037923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 19223857 - 19223811
Alignment:
Q  13 gaaatttggaccactgccgaaaaccttcggacttattgacaacattg 59  Q
    ||||||||||||  ||| |||||| ||||||||||||||||||||||    
T  19223857 gaaatttggacccttgctgaaaactttcggacttattgacaacattg 19223811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 116; Significance: 9e-59; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 35286 - 35421
Alignment:
Q  190 tcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaa 289  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  35286 tcggaataaaaaatgaggtacttcaaagtaacctctttgtcgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaa 35385  T
Q  290 ggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    | |||||||||||||||||||||||| |||||||||    
T  35386 gaatagagaaaagtggtcaaaatttggggtatgaca 35421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 180 - 325
Target Start/End: Complemental strand, 10440082 - 10439937
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10440082 agggtctgactcggaataaaaaatgaggtactttaaagtaacctctctgccgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 10439983  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| |||||| |||||||||||||||||||||||| |||||||||    
T  10439982 aaatgggcaagaatagagaaaagtggtcaaaatttggggtatgaca 10439937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 4952317 - 4952462
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||||||||||||||||    
T  4952317 agggtccgactcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacgacgaaaatttccgactttaaaaatacgaata 4952416  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| ||||| ||||||||||||||||||||||||||||    
T  4952417 aaatgggtaagaatagataaaagtggtcaaaatttgaggtatgaca 4952462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 180 - 325
Target Start/End: Complemental strand, 13831645 - 13831500
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13831645 agggtccgactcggaataaaaaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 13831546  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||| ||||||||||||||||  |||||||||    
T  13831545 aaatgggtaagaatagaggaaagtggtcaaaatttagggtatgaca 13831500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 180 - 325
Target Start/End: Complemental strand, 13839676 - 13839531
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13839676 agggtccgactcggaataaaaaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 13839577  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| |  ||| |||||| ||||||||||||||||| |||||||||    
T  13839576 aaatggataagaatagaggaaagtggtcaaaatttggggtatgaca 13839531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 18304312 - 18304457
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||| |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18304312 agggtccgactcgaaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 18304411  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||||||||||||||||||||| |||||||||    
T  18304412 aaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 18304457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 180 - 325
Target Start/End: Complemental strand, 12978600 - 12978455
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||| ||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12978600 agggtccgactcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 12978501  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||||||||||||||||||||| |||||||||    
T  12978500 aaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 12978455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 200 - 325
Target Start/End: Original strand, 21662962 - 21663088
Alignment:
Q  200 aaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgacttt-aaaaatacgaataaaataggcaaggatagaga 298  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||||||||| | || || |||| ||||||||||||||||| || ||  | ||| |    
T  21662962 aaatgaggtacttcaaagtaacctccctgttgaaatttcgtctaaaacgacgaagactctcggctttaaaaaatacgaataaaatgggtaaaaacagata 21663061  T
Q  299 aaagtggtcaaaatttgaggtatgaca 325  Q
    |||||| |||||||||| |||||||||    
T  21663062 aaagtgatcaaaatttggggtatgaca 21663088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 30244869 - 30244775
Alignment:
Q  231 gaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||||| || ||||||| ||||||||||| ||||||||||||||||||||||| |  ||  ||||||||||||||||||||||||||||||||||    
T  30244869 gaaattacgactgaaacaacgaaaattcctgactttaaaaatacgaataaaatggataaaaatagagaaaagtggtcaaaatttgaggtatgaca 30244775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 264 - 325
Target Start/End: Original strand, 4941581 - 4941642
Alignment:
Q  264 tttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||||||||||||||||||| || ||| |||||||||||||||||||||||| |||||||||    
T  4941581 tttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 4941642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 30255506 - 30255413
Alignment:
Q  231 gaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||||| || ||||||| ||||||||| | ||| | ||||||||||||||||| |  ||  |||||||||||||||||||||||| |||||||||    
T  30255506 gaaattacgactgaaacaacgaaaatttctgacatgaaaaatacgaataaaatggataaaaatagagaaaagtggtcaaaatttg-ggtatgaca 30255413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 1955691 - 1955746
Alignment:
Q  199 aaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaa 254  Q
    |||||||||| |||||||||||||||| ||  ||||||| ||||||||||||||||    
T  1955691 aaaatgaggtgcttcaaagtaacctctctgccgaaattttgtctgaaacgacgaaa 1955746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 30245662 - 30245568
Alignment:
Q  231 gaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||||| || ||||||| ||||||||| | ||| | ||||||||||||||||| |  ||  |||||||||||||||||||| ||  |||||||||    
T  30245662 gaaattacgactgaaacaacgaaaatttctgacatgaaaaatacgaataaaatggataaaaatagagaaaagtggtcaaaaatttgggtatgaca 30245568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 27343611 - 27343756
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27343611 agggtccgactcggaataaaaaatgaggtacttcaaagtaacctctctgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 27343710  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||  |||||||||||||||||||||||| |||||||||    
T  27343711 aaatgggtaaaaatagagaaaagtggtcaaaatttggggtatgaca 27343756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 4523600 - 4523745
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4523600 agggtccgactcggaataaaaaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 4523699  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| |  ||| |||||| ||||||||||||||||| |||||||||    
T  4523700 aaatggataagaatagaggaaagtggtcaaaatttggggtatgaca 4523745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 180 - 325
Target Start/End: Complemental strand, 12996621 - 12996476
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||| |||| |||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12996621 agggactgactcggaataaaaaatgaggtacttcaaagtaacctctctaccgaaatttcgtctgaaacgacgaaaatttccgactttaaaaatacgaata 12996522  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||||||||||||||||||||| |||||||||    
T  12996521 aaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 12996476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 8094212 - 8094347
Alignment:
Q  190 tcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaa 289  Q
    ||||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||    
T  8094212 tcggaatcaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacaaataaaatgggtaa 8094311  T
Q  290 ggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    | |||||||||||||||||||||||| |||||||||    
T  8094312 gaatagagaaaagtggtcaaaatttggggtatgaca 8094347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 8103018 - 8103153
Alignment:
Q  190 tcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaa 289  Q
    ||||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||    
T  8103018 tcggaatcaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacaaataaaatgggtaa 8103117  T
Q  290 ggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    | |||||||||||||||||||||||| |||||||||    
T  8103118 gaatagagaaaagtggtcaaaatttggggtatgaca 8103153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 179 - 325
Target Start/End: Original strand, 21532224 - 21532369
Alignment:
Q  179 aagggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaat 278  Q
    ||||||| || || |||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21532224 aagggtccgactcagaataaaaaatgaggtacttcaaagtaatct-tttgtcgaaatttcgtctgaaacgacgaaaatttccgactttaaaaatacgaat 21532322  T
Q  279 aaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    ||||| |  |||||||||||||||||||||||||||| |||||||||    
T  21532323 aaaatggataaggatagagaaaagtggtcaaaatttggggtatgaca 21532369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 197 - 325
Target Start/End: Complemental strand, 52295732 - 52295604
Alignment:
Q  197 aaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggataga 296  Q
    |||||||||||||||||||||||| |||| ||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||    
T  52295732 aaaaaatgaggtacttcaaagtaatctctctgccgaaattttgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaagaataga 52295633  T
Q  297 gaaaagtggtcaaaatttgaggtatgaca 325  Q
    ||||||||||||||||||| |||||||||    
T  52295632 gaaaagtggtcaaaatttggggtatgaca 52295604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 200 - 325
Target Start/End: Original strand, 12428418 - 12428543
Alignment:
Q  200 aaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaa 299  Q
    ||||||||||||||||||||| ||||| || ||||||||||||||||  ||||||||| | | ||||||||||||||||||||| || |   ||||||||    
T  12428418 aaatgaggtacttcaaagtaaactcttcgtcgaaatttcgtctgaaataacgaaaatttctggctttaaaaatacgaataaaatgggtagaaatagagaa 12428517  T
Q  300 aagtggtcaaaatttgaggtatgaca 325  Q
    |||||||||||||||| |||||||||    
T  12428518 aagtggtcaaaatttggggtatgaca 12428543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 199 - 325
Target Start/End: Complemental strand, 33188891 - 33188766
Alignment:
Q  199 aaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagaga 298  Q
    ||||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||| |  |||||||||||| |||||||  |  ||  ||||| |    
T  33188891 aaaatgaggtaattcaaagtaaccttcttgctgaaatttcgtctgaaacgacgaaaattctcagctttaaaaatacaaataaaaaggataaaaataga-a 33188793  T
Q  299 aaagtggtcaaaatttgaggtatgaca 325  Q
    ||||| ||||||||||| |||||||||    
T  33188792 aaagttgtcaaaatttggggtatgaca 33188766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 252 - 325
Target Start/End: Complemental strand, 10638400 - 10638328
Alignment:
Q  252 aaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    ||||||||||||||||||| |||||||||||| || ||  |||||||||||||||||||||||| |||||||||    
T  10638400 aaaattcccgactttaaaa-tacgaataaaatgggtaaaaatagagaaaagtggtcaaaatttggggtatgaca 10638328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 10638451 - 10638406
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctct 225  Q
    |||||| || ||||||||||||||||||||||||||||||||||||    
T  10638451 agggtccgactcggaataaaaaatgaggtacttcaaagtaacctct 10638406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 270
Target Start/End: Complemental strand, 12402946 - 12402907
Alignment:
Q  231 gaaatttcgtctgaaacgacgaaaattcccgactttaaaa 270  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  12402946 gaaatttcgtctgaaacgacgaaaattcctgactttaaaa 12402907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 325
Target Start/End: Complemental strand, 3424454 - 3424331
Alignment:
Q  200 aaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaa 299  Q
    |||||||||||||||||||||||||  ||  ||||||||||||| |||||||||  |||  | |||| ||| || ||||||||  || ||   |||||||    
T  3424454 aaatgaggtacttcaaagtaacctc--tgccgaaatttcgtctggaacgacgaactttcttggcttttaaagtaagaataaaaggggtaaaattagagaa 3424357  T
Q  300 aagtggtcaaaatttgaggtatgaca 325  Q
    || || |||||||||| |||||||||    
T  3424356 aaatgatcaaaatttggggtatgaca 3424331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 25249599 - 25249644
Alignment:
Q  201 aatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaa 246  Q
    ||||||||||| ||||||||||||  |||||||||||||| |||||    
T  25249599 aatgaggtactccaaagtaacctccctgttgaaatttcgtttgaaa 25249644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 8154564 - 8154709
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8154564 agggtccgactcggaataaaaaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 8154663  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||| ||||||||||||||||| |||||||||    
T  8154664 aaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 8154709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 180 - 326
Target Start/End: Complemental strand, 50824497 - 50824351
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || |||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  50824497 agggtccgactcggaataaaaaatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaacgacgaaaatttccgactttaaaaatacgaata 50824398  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgacat 326  Q
    |||| || ||| |||||||||||||||||||||||| ||||||||||    
T  50824397 aaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacat 50824351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 180 - 326
Target Start/End: Original strand, 50851363 - 50851509
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || |||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  50851363 agggtccgactcggaataaaaaatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaacgacgaaaatttccgactttaaaaatacgaata 50851462  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgacat 326  Q
    |||| || ||| |||||||||||||||||||||||| ||||||||||    
T  50851463 aaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacat 50851509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 180 - 325
Target Start/End: Complemental strand, 41006701 - 41006556
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||| ||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41006701 agggtccgactcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 41006602  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||||||| ||||||||||||| |||||||||    
T  41006601 aaatgggtaagaatagagaaaaatggtcaaaatttggggtatgaca 41006556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 180 - 325
Target Start/End: Complemental strand, 41015481 - 41015336
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||| ||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41015481 agggtccgactcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 41015382  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||||||| ||||||||||||| |||||||||    
T  41015381 aaatgggtaagaatagagaaaaatggtcaaaatttggggtatgaca 41015336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 14538534 - 14538670
Alignment:
Q  190 tcggaataaaaaatgaggtacttcaaagtaacctcttt-gttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggca 288  Q
    |||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |  |    
T  14538534 tcggaataaaaaatgaggtacttcaaagtaacctcttttgccgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatatgaataaaatggata 14538633  T
Q  289 aggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    || |||||||||||||||||||||||| |||||||||    
T  14538634 agaatagagaaaagtggtcaaaatttggggtatgaca 14538670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 179 - 326
Target Start/End: Original strand, 28470137 - 28470283
Alignment:
Q  179 aagggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaat 278  Q
    ||||||| || || |||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||| | ||||||||||||||||||    
T  28470137 aagggtccgactcagaataaaaaatgaggtacttcatagtaatct-tttgtcgaaatttcgtctgaaacgacgaaaatttctgactttaaaaatacgaat 28470235  T
Q  279 aaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgacat 326  Q
    ||||| |  |||||||||||||||||||||||||||| ||||||||||    
T  28470236 aaaatggataaggatagagaaaagtggtcaaaatttggggtatgacat 28470283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 27341254 - 27341400
Alignment:
Q  180 agggtctgattcggaataaaa-aatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaat 278  Q
    |||| |||| ||||||||||| ||||||||||||||||||||||| | ||  ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27341254 agggcctgactcggaataaaaaaatgaggtacttcaaagtaacctttctgccgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatatgaat 27341353  T
Q  279 aaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    ||||| |  ||| |||||||||||||||||||||||| |||||||||    
T  27341354 aaaatggataagaatagagaaaagtggtcaaaatttggggtatgaca 27341400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 180 - 325
Target Start/End: Complemental strand, 2211384 - 2211239
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||| |||| |||||||||||||||||||| || ||| || ||||||||  |||||||||||| |||||||||||||||| |||||||||||||||||||    
T  2211384 agggcctgactcggaataaaaaatgaggtattttaaaataccctctttgccgaaatttcgtcttaaacgacgaaaattcctgactttaaaaatacgaata 2211285  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    ||||||| ||| |||||||||||||||||||||||  |||||||||    
T  2211284 aaataggtaagaatagagaaaagtggtcaaaatttagggtatgaca 2211239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 9525364 - 9525499
Alignment:
Q  190 tcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaa 289  Q
    |||||||||||||||||||| || |||||||||| | ||  |||||||||||| |||| ||||||||||||||||||||||||||||||||||| || ||    
T  9525364 tcggaataaaaaatgaggtattttaaagtaacctttctgccgaaatttcgtctaaaacaacgaaaattcccgactttaaaaatacgaataaaatgggtaa 9525463  T
Q  290 ggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    | ||||||||||||| |||||||||| |||||||||    
T  9525464 gaatagagaaaagtgatcaaaatttggggtatgaca 9525499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 9555038 - 9555173
Alignment:
Q  190 tcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaa 289  Q
    |||||||||||||||||||| || |||||||||| | ||  |||||||||||| |||| |||||||||||||||||||||||||||| |||||| || ||    
T  9555038 tcggaataaaaaatgaggtattttaaagtaacctttctgccgaaatttcgtctaaaacaacgaaaattcccgactttaaaaatacgagtaaaatgggtaa 9555137  T
Q  290 ggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    | ||||||||||||| |||||||||| |||||||||    
T  9555138 gaatagagaaaagtgatcaaaatttggggtatgaca 9555173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 200 - 325
Target Start/End: Complemental strand, 17933780 - 17933655
Alignment:
Q  200 aaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaa 299  Q
    ||||||||||||||||||||||||||  |  ||||||||||||||||  ||||||||| ||||||||||||||||||||||||| || ||  ||||||||    
T  17933780 aaatgaggtacttcaaagtaacctctccgaagaaatttcgtctgaaataacgaaaatttccgactttaaaaatacgaataaaatgggtaaaaatagagaa 17933681  T
Q  300 aagtggtcaaaatttgaggtatgaca 325  Q
    || ||||||||||||| |||||||||    
T  17933680 aattggtcaaaatttggggtatgaca 17933655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 200 - 325
Target Start/End: Complemental strand, 17919324 - 17919199
Alignment:
Q  200 aaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaa 299  Q
    ||||||||||||| ||||||||||||  |  ||||||||||||||||  |||||||||  || ||||||||||||||||||||| |  ||  ||||||||    
T  17919324 aaatgaggtactttaaagtaacctctccgacgaaatttcgtctgaaataacgaaaattttcggctttaaaaatacgaataaaatggataaaaatagagaa 17919225  T
Q  300 aagtggtcaaaatttgaggtatgaca 325  Q
    |||||||||||||||| |||||||||    
T  17919224 aagtggtcaaaatttggggtatgaca 17919199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 199 - 323
Target Start/End: Original strand, 43470492 - 43470615
Alignment:
Q  199 aaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagaga 298  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||||||||  ||||||| || ||||||||||||||||||||  || ||  ||||| |    
T  43470492 aaaatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaacgaataaaattctcggctttaaaaatacgaataaaaagggtaaaaataga-a 43470590  T
Q  299 aaagtggtcaaaatttgaggtatga 323  Q
    ||||| ||||||||||| |||||||    
T  43470591 aaagtagtcaaaatttggggtatga 43470615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 200 - 325
Target Start/End: Original strand, 16816145 - 16816268
Alignment:
Q  200 aaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaa 299  Q
    |||||||||||||||||||| |||||  ||  |||||||||||||||  ||||||||| ||| |||||||||||||||||||||  | ||  ||||||||    
T  16816145 aaatgaggtacttcaaagta-cctctccgtcaaaatttcgtctgaaataacgaaaatttccggctttaaaaatacgaataaaatgagtaaaaatagagaa 16816243  T
Q  300 aagtggtcaaaatttgaggtatgaca 325  Q
    |||||||||||||||| |||||||||    
T  16816244 aagtggtcaaaatttg-ggtatgaca 16816268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 261 - 325
Target Start/End: Complemental strand, 17628329 - 17628265
Alignment:
Q  261 gactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    ||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |||||||||    
T  17628329 gactttaaaaatacgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 17628265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 21186841 - 21186747
Alignment:
Q  231 gaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||||||||| |||||| |||||||||| || |||||||| |||||||||||| |  ||  | ||| |||||||||||||||||| |||||||||    
T  21186841 gaaatttcgtttgaaacaacgaaaattctcggctttaaaagtacgaataaaatggataaaaacagataaaagtggtcaaaatttggggtatgaca 21186747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 231 - 321
Target Start/End: Complemental strand, 18349650 - 18349560
Alignment:
Q  231 gaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtat 321  Q
    |||||||||||| |||||||| | ||| |||| ||||||| ||||||||||||  | ||  |||||||||||| ||||||||||| |||||    
T  18349650 gaaatttcgtctaaaacgacggacatttccgattttaaaagtacgaataaaatgtgtaaaaatagagaaaagttgtcaaaatttggggtat 18349560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 325
Target Start/End: Complemental strand, 18039106 - 18039011
Alignment:
Q  230 tgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||||||||||||||||| ||||   ||| || | || |||||||||||||||| || ||  |  ||||||||||||||||||||| |||||||||    
T  18039106 tgaaatttcgtctgaaacaacgatccttctcggcgtttaaaatacgaataaaatgggtaaaaagcgagaaaagtggtcaaaatttggggtatgaca 18039011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 30447 - 30541
Alignment:
Q  231 gaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||||||||||| |||||||| | ||| |||  ||||||| ||| || |||||  | ||  |||||||||||||||||||||||| |||||||||    
T  30447 gaaatttcgtctaaaacgacggacatttccggttttaaaagtacaaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgaca 30541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 8197667 - 8197761
Alignment:
Q  231 gaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    ||||||| |||| |||||||| | ||| |||  ||||||| |||||| |||||  | ||  |||||||||||||||||||||||| |||||||||    
T  8197667 gaaattttgtctaaaacgacggacatttccggttttaaaagtacgaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgaca 8197761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 31276640 - 31276593
Alignment:
Q  199 aaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaa 246  Q
    |||||||||||||||||||||||||  |||| |||||||||| |||||    
T  31276640 aaaatgaggtacttcaaagtaaccttcttgtcgaaatttcgtttgaaa 31276593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 16288733 - 16288692
Alignment:
Q  199 aaaatgaggtacttcaaagtaacctctttgttgaaatttcgt 240  Q
    ||||||||||||||||||||||||||| ||  ||||||||||    
T  16288733 aaaatgaggtacttcaaagtaacctctctgccgaaatttcgt 16288692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 3432810 - 3432955
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3432810 agggtccgactcggaataaaaaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 3432909  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||| ||||||||||||||||| |||||||||    
T  3432910 aaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 3432955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 180 - 325
Target Start/End: Complemental strand, 31540099 - 31539954
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||| ||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31540099 agggtccgactcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 31540000  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||||||||||||||||||||| |||||||||    
T  31539999 aaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 31539954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 180 - 325
Target Start/End: Complemental strand, 31548668 - 31548523
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||| ||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31548668 agggtccgactcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 31548569  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||||||||||||||||||||| |||||||||    
T  31548568 aaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 31548523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 32137684 - 32137819
Alignment:
Q  190 tcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaa 289  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||    
T  32137684 tcggaataaaaaatgaggtacttcaaagtaacttatttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatggataa 32137783  T
Q  290 ggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    | ||||||||||||| |||||||||| |||| ||||    
T  32137784 gaatagagaaaagtgatcaaaatttggggtaagaca 32137819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 35103984 - 35104129
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||| ||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35103984 agggtccgactcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccaactttaaaaatacgaata 35104083  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||||||||||||||||||||| |||||||||    
T  35104084 aaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 35104129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 41746622 - 41746758
Alignment:
Q  190 tcggaataaaaaatgaggtacttcaaagtaacctcttt-gttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggca 288  Q
    |||||||||||||||||||||||||||||||||||||| |  ||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |  |    
T  41746622 tcggaataaaaaatgaggtacttcaaagtaacctcttttgccgaaattttgtctgaaacgacgaaaattcccgactttaaaaatatgaataaaatggata 41746721  T
Q  289 aggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    || ||||| |||||||||||||||||| | |||||||    
T  41746722 agaatagataaaagtggtcaaaatttgggatatgaca 41746758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 200 - 325
Target Start/End: Original strand, 29221429 - 29221553
Alignment:
Q  200 aaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaa 299  Q
    |||||||||| |||||| || ||||| ||  ||||||||||||||||   |||||||| ||||||||||||||||||||||||| || ||  ||||||||    
T  29221429 aaatgaggtatttcaaaata-cctctctgccgaaatttcgtctgaaatagcgaaaatttccgactttaaaaatacgaataaaatgggtaaaaatagagaa 29221527  T
Q  300 aagtggtcaaaatttgaggtatgaca 325  Q
    |||| ||||||||||| |||||||||    
T  29221528 aagtagtcaaaatttggggtatgaca 29221553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 200 - 325
Target Start/End: Original strand, 44320132 - 44320257
Alignment:
Q  200 aaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaa 299  Q
    |||||||||||||  ||||||||||  || |||||||||||||||||||||||   ||| || | || |||||||||||||||| || ||  |  |||||    
T  44320132 aaatgaggtactttcaagtaacctccctgctgaaatttcgtctgaaacgacgatccttctcggcgtttaaaatacgaataaaatgggtaaaaagcgagaa 44320231  T
Q  300 aagtggtcaaaatttgaggtatgaca 325  Q
    |||||||||||||||| |||||||||    
T  44320232 aagtggtcaaaatttggggtatgaca 44320257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 28457681 - 28457629
Alignment:
Q  200 aaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacga 252  Q
    |||||| ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  28457681 aaatgatgtacttcaaagtaacctctctgtcgaaatttcgtctgaaacgacga 28457629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 201 - 283
Target Start/End: Original strand, 51058330 - 51058411
Alignment:
Q  201 aatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaat 283  Q
    ||||||||| |||||| || ||| | || ||||||||||| |||||| ||||||||||||  |||||||||||||||||||||    
T  51058330 aatgaggtatttcaaaata-cctttctgctgaaatttcgtttgaaacaacgaaaattcccagctttaaaaatacgaataaaat 51058411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 21498869 - 21498963
Alignment:
Q  231 gaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||||||||||| |||||||| | ||| |||  ||||||| ||||||  ||||  | ||  |||||||||||||||||||||||| |||||||||    
T  21498869 gaaatttcgtctaaaacgacggacatttccggttttaaaagtacgaacgaaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgaca 21498963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 8241438 - 8241491
Alignment:
Q  200 aaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaa 253  Q
    ||||||||||||| |||||||||||| |   |||||||||||||||||||||||    
T  8241438 aaatgaggtactttaaagtaacctctctaccgaaatttcgtctgaaacgacgaa 8241491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 13462819 - 13462775
Alignment:
Q  202 atgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaa 246  Q
    |||||||||||||||||||||||||| |  |||||||||||||||    
T  13462819 atgaggtacttcaaagtaacctctttatccaaatttcgtctgaaa 13462775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 22460071 - 22460026
Alignment:
Q  201 aatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaa 246  Q
    ||||||||||| ||||||||||||| ||| |||||||||| |||||    
T  22460071 aatgaggtactccaaagtaacctctctgtcgaaatttcgtttgaaa 22460026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 5e-54; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 190 - 325
Target Start/End: Complemental strand, 33298219 - 33298085
Alignment:
Q  190 tcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaa 289  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  33298219 tcggaataaaaaatgaggtacttcaaagtaac-tctttgtcgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaa 33298121  T
Q  290 ggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||||||||||||||||||||| ||| |||||||||    
T  33298120 ggatagagaaaagtggtcaaaagttggggtatgaca 33298085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 196 - 325
Target Start/End: Original strand, 15391547 - 15391676
Alignment:
Q  196 taaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatag 295  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||    
T  15391547 taaaaaatgaggtacttcaaagtaacctctttgtcgaaatttcgtctgaaacgacgaaaattcctggctttaaaaatacgaataaaatgggcaaggatag 15391646  T
Q  296 agaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||||||||||||||||||| | |||||||    
T  15391647 agaaaagtggtcaaaatttgggatatgaca 15391676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 180 - 326
Target Start/End: Complemental strand, 5004206 - 5004060
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||| ||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5004206 agggtccgactcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 5004107  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgacat 326  Q
    |||| || ||| |||||||||||||||||||||||| ||||||||||    
T  5004106 aaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacat 5004060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 190 - 325
Target Start/End: Complemental strand, 13825838 - 13825703
Alignment:
Q  190 tcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaa 289  Q
    ||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||    
T  13825838 tcggaatcaaaaatgaggtacttcaaagtaacctctctgtcgaaatttcgtctgaaacgacgaaaattcctgactttaaaaatacgaataaaatgggtaa 13825739  T
Q  290 ggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    | ||||||||||||| |||||||||| |||||||||    
T  13825738 gaatagagaaaagtgatcaaaatttggggtatgaca 13825703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 30824459 - 30824594
Alignment:
Q  190 tcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaa 289  Q
    ||||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||    
T  30824459 tcggaatcaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacaaataaaatgggtaa 30824558  T
Q  290 ggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    | |||||||||||||||||||||||| |||||||||    
T  30824559 gaatagagaaaagtggtcaaaatttggggtatgaca 30824594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 180 - 326
Target Start/End: Original strand, 35091596 - 35091742
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||   |||||||||||||||||||||||||| ||||||||||||||| |||||    
T  35091596 agggtccgattcgaaataaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaatttccgactttaaaaatatgaata 35091695  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgacat 326  Q
    |||| || ||| |||||||||||||||||||||||| ||||||||||    
T  35091696 aaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacat 35091742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 190 - 326
Target Start/End: Complemental strand, 25550430 - 25550294
Alignment:
Q  190 tcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaa 289  Q
    |||||||||||||||||||||||||||||||||||| ||   ||||||||| |||||||||||||||||||||||||||||||| ||||||||| || ||    
T  25550430 tcggaataaaaaatgaggtacttcaaagtaacctctctgccaaaatttcgtttgaaacgacgaaaattcccgactttaaaaatatgaataaaatgggtaa 25550331  T
Q  290 ggatagagaaaagtggtcaaaatttgaggtatgacat 326  Q
    | |||||||||||||||||||||||| ||||||||||    
T  25550330 gaatagagaaaagtggtcaaaatttggggtatgacat 25550294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 180 - 325
Target Start/End: Complemental strand, 11279982 - 11279837
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  11279982 agggtccgactcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattctcaactttaaaaatacgaata 11279883  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||| ||||||||||||||||| |||||||||    
T  11279882 aaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 11279837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 197 - 325
Target Start/End: Complemental strand, 5994827 - 5994699
Alignment:
Q  197 aaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggataga 296  Q
    ||||||||||||||||||||||||||||||||   |||||| ||||||||||||||||||| ||||||||||||||||||||||||| || ||| |||||    
T  5994827 aaaaaatgaggtacttcaaagtaacctctttgccaaaattttgtctgaaacgacgaaaatttccgactttaaaaatacgaataaaatgggtaagaataga 5994728  T
Q  297 gaaaagtggtcaaaatttgaggtatgaca 325  Q
    ||||||||||||||||||| |||||||||    
T  5994727 gaaaagtggtcaaaatttggggtatgaca 5994699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 180 - 323
Target Start/End: Complemental strand, 25991995 - 25991852
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || || ||||||||||||||||||||||||||||||||| |   |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25991995 agggtccgactctgaataaaaaatgaggtacttcaaagtaacctctctaccgaaatttcttctgaaacgacgaaaattcccgactttaaaaatacgaata 25991896  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatga 323  Q
    |||| || ||| |||||||||||||||||| ||||| |||||||    
T  25991895 aaatgggtaagaatagagaaaagtggtcaacatttggggtatga 25991852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 25506461 - 25506606
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||| |||| ||||||| |||||||||||| || |||||||||||| ||  |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25506461 agggcctgactcggaatcaaaaatgaggtattttaaagtaacctctctgccgaaatttcgtctaaaacgacgaaaattcccgactttaaaaatacgaata 25506560  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| ||||||||||||| |||||||||| |||||||||    
T  25506561 aaatgggtaagaatagagaaaagtgatcaaaatttggggtatgaca 25506606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 180 - 325
Target Start/End: Complemental strand, 23925481 - 23925335
Alignment:
Q  180 agggtctgattcggaat-aaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaat 278  Q
    |||| |||| ||||||| ||||||||||||||||||||||||| ||| |   |||||||||||  ||| || ||||||||||||||||||||||||||||    
T  23925481 agggcctgactcggaatcaaaaaatgaggtacttcaaagtaacatctctaccgaaatttcgtcaaaaatgatgaaaattcccgactttaaaaatacgaat 23925382  T
Q  279 aaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    ||||| || ||| |||||||||||||||||||||||| |||||||||    
T  23925381 aaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 23925335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 26526631 - 26526708
Alignment:
Q  189 ttcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgacttt 266  Q
    |||||||  |||||||||||| |||||||||||| || ||  || |||||||||||||||||||||||||||||||||    
T  26526631 ttcggaaccaaaaatgaggtaattcaaagtaaccactctgccgatatttcgtctgaaacgacgaaaattcccgacttt 26526708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 325
Target Start/End: Complemental strand, 13490284 - 13490193
Alignment:
Q  234 atttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| ||||||||  |||||||||||||  |||| | ||||||||||||| |  ||  |||||||||||||||||||||||| |||||||||    
T  13490284 attttgtctgaaataacgaaaattcccggttttacagatacgaataaaatggataaaaatagagaaaagtggtcaaaatttggggtatgaca 13490193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 326
Target Start/End: Original strand, 5489132 - 5489185
Alignment:
Q  273 acgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgacat 326  Q
    ||||||||||| || ||| |||||||||||||||||||||||| ||||||||||    
T  5489132 acgaataaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacat 5489185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 233 - 325
Target Start/End: Complemental strand, 11053794 - 11053702
Alignment:
Q  233 aatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaata-ggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    ||||||||||||||  ||||||||||  |  ||||||||||||||||||||  || ||  ||||| |||||||||||||||||| |||||||||    
T  11053794 aatttcgtctgaaataacgaaaattctggt-tttaaaaatacgaataaaatttggtaaaaatagaaaaaagtggtcaaaatttggggtatgaca 11053702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 14894998 - 14894939
Alignment:
Q  199 aaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattc 258  Q
    ||||||||||||||||||||||  ||||||  ||||| ||||||||| |||| |||||||    
T  14894998 aaaatgaggtacttcaaagtaatttctttgccgaaatatcgtctgaagcgacaaaaattc 14894939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 180 - 325
Target Start/End: Complemental strand, 33180 - 33035
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || ||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  33180 agggtccgactcggaataaaaaatgaggtactttaaagtaacctctttgccgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgtata 33081  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||||||||||||||||||||| |||||||||    
T  33080 aaatgggtaagaatagagaaaagtggtcaaaatttggggtatgaca 33035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 180 - 325
Target Start/End: Original strand, 4 - 149
Alignment:
Q  180 agggtctgattcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaata 279  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  4 agggtccgactcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattctcaactttaaaaatacgaata 103  T
Q  280 aaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||| || ||| |||||| ||||||||||||||||| |||||||||    
T  104 aaatgggtaagaatagaggaaagtggtcaaaatttggggtatgaca 149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 197 - 325
Target Start/End: Complemental strand, 15941 - 15813
Alignment:
Q  197 aaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggataga 296  Q
    ||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||  |||||    
T  15941 aaaaaatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaacgacgaaaatttccgactttaaaaatacgaataaaatgggtaaaaataga 15842  T
Q  297 gaaaagtggtcaaaatttgaggtatgaca 325  Q
    ||||||||||||||||||| |||||||||    
T  15841 gaaaagtggtcaaaatttggggtatgaca 15813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 190 - 325
Target Start/End: Complemental strand, 121363 - 121228
Alignment:
Q  190 tcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaa 289  Q
    ||||||| ||||||||  |||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  121363 tcggaatcaaaaatgatttacttcaaagtaacctctctaccgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaatgggtaa 121264  T
Q  290 ggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    | |||||||||||||||||||||||| |||||||||    
T  121263 gaatagagaaaagtggtcaaaatttggggtatgaca 121228  T

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Target: scaffold0497 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 199 - 325
Target Start/End: Complemental strand, 11119 - 10993
Alignment:
Q  199 aaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagaga 298  Q
    ||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||| |||||||||| |||||||||||||| || ||| |||||||    
T  11119 aaaatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaacgacgaaaatttccgactttaacaatacgaataaaatgggtaagaatagaga 11020  T
Q  299 aaagtggtcaaaatttgaggtatgaca 325  Q
    ||||||||||||||||| |||||||||    
T  11019 aaagtggtcaaaatttggggtatgaca 10993  T

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Target: scaffold0632 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 197 - 325
Target Start/End: Complemental strand, 4518 - 4390
Alignment:
Q  197 aaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggataga 296  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| || ||| |||||    
T  4518 aaaaaatgaggtacttcaaagtaacctctctgtcgaaatttcgtctgaaacgatgaaaattaccgactttaaaaatatgaataaaatgggtaagaataga 4419  T
Q  297 gaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||||   ||||||||||| |||||||||    
T  4418 gaaaaaatgtcaaaatttggggtatgaca 4390  T

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Target: scaffold0016 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 190 - 325
Target Start/End: Complemental strand, 23600 - 23464
Alignment:
Q  190 tcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgacttta-aaaatacgaataaaataggca 288  Q
    ||||||| |||||||||||||||||||||||||||| |   ||||||||||| |||| || ||||||||||||||||| |||||||||||||||| || |    
T  23600 tcggaatcaaaaatgaggtacttcaaagtaacctctctaccgaaatttcgtcagaaatgatgaaaattcccgactttaaaaaatacgaataaaatgggta 23501  T
Q  289 aggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    || |||||||||||||||||||||||| |||||||||    
T  23500 agaatagagaaaagtggtcaaaatttggggtatgaca 23464  T

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Target: scaffold0173 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 859 - 994
Alignment:
Q  190 tcggaataaaaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaa 289  Q
    ||||||| |||||||||||| ||||||||||||| | ||  ||||||||||||||||||||||||||||||  ||||||||||||||||||||| || ||    
T  859 tcggaatcaaaaatgaggtatttcaaagtaacctttctgccgaaatttcgtctgaaacgacgaaaattcccagctttaaaaatacgaataaaatgggtaa 958  T
Q  290 ggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    | |||||||||  ||||||||||||| |||||||||    
T  959 gaatagagaaagctggtcaaaatttggggtatgaca 994  T

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Target: scaffold0039 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 214 - 325
Target Start/End: Original strand, 40787 - 40898
Alignment:
Q  214 aaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatt 313  Q
    |||||||||||||||| || |||||||||||||||| |||||| | |||||||||||||||||||||||| |  ||| ||||||||||||||||||||||    
T  40787 aaagtaacctctttgtcgagatttcgtctgaaacgatgaaaatgctcgactttaaaaatacgaataaaatggataagaatagagaaaagtggtcaaaatt 40886  T
Q  314 tgaggtatgaca 325  Q
    || |||||||||    
T  40887 tggggtatgaca 40898  T

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Target: scaffold0431 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 200 - 325
Target Start/End: Complemental strand, 264 - 139
Alignment:
Q  200 aaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaa 299  Q
    ||||||||||||||||||||| ||||| || ||||||||||||||||  ||||||||| | | ||||||||||||||||||||| || |   ||||||||    
T  264 aaatgaggtacttcaaagtaaactcttcgtcgaaatttcgtctgaaataacgaaaatttctggctttaaaaatacgaataaaatgggtagaaatagagaa 165  T
Q  300 aagtggtcaaaatttgaggtatgaca 325  Q
    |||||||||||||||| |||||||||    
T  164 aagtggtcaaaatttggggtatgaca 139  T

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Target: scaffold0170 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 199 - 325
Target Start/End: Original strand, 7129 - 7255
Alignment:
Q  199 aaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagaga 298  Q
    |||||||||||||||||||||||||   |   ||||||||||||||||| |||||||||| || |||||||| ||| |||||||| || ||  | |||||    
T  7129 aaaatgaggtacttcaaagtaaccttcctcccgaaatttcgtctgaaacaacgaaaattctcggctttaaaagtacaaataaaatgggtaaaaacagaga 7228  T
Q  299 aaagtggtcaaaatttgaggtatgaca 325  Q
    ||||||||||||||||  |||||||||    
T  7229 aaagtggtcaaaatttagggtatgaca 7255  T

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Target: scaffold0222 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 200 - 325
Target Start/End: Original strand, 20422 - 20547
Alignment:
Q  200 aaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaa 299  Q
    |||||||||||| ||||||||||||| ||  ||||||||||||||||| |||||||||| || |||||||| |||||| |||||  | ||    | ||||    
T  20422 aaatgaggtactccaaagtaacctctctgccgaaatttcgtctgaaacaacgaaaattctcggctttaaaagtacgaacaaaatgtgtaaaaccatagaa 20521  T
Q  300 aagtggtcaaaatttgaggtatgaca 325  Q
    |||||||||||||||| |||||||||    
T  20522 aagtggtcaaaatttggggtatgaca 20547  T

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Target: scaffold0027 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 65622 - 65701
Alignment:
Q  179 aagggtctgattcggaataaaa-aatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaatt 257  Q
    ||||||| || ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||    
T  65622 aagggtccgactcggaataaaaaaatgaggtacttcaaagtaacatctttgtcgaaatttcgtccgaaacaacgaaaatt 65701  T

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Target: scaffold0027; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 65470 - 65510
Alignment:
Q  13 gaaatttggaccactgccgaaaaccttcggacttattgaca 53  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  65470 gaaatttggaccactgccgaaaactttcggactcattgaca 65510  T

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Target: scaffold0315 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 10595 - 10651
Alignment:
Q  199 aaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaa 255  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||    
T  10595 aaaatgaggtacttcaaagtaacctctttgccgaaatttcgtctgaagcgacgaaaa 10651  T

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Target: scaffold0015 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 325
Target Start/End: Complemental strand, 192623 - 192528
Alignment:
Q  230 tgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    ||||||||||||| |||||||| | ||| |||  ||||||| |||||| |||||  | ||  |||||||||||||||||||||||| |||||||||    
T  192623 tgaaatttcgtctaaaacgacggacatttccggttttaaaagtacgaacaaaatctgtaaaaatagagaaaagtggtcaaaatttggggtatgaca 192528  T

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Target: scaffold0290 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 276
Target Start/End: Original strand, 15760 - 15837
Alignment:
Q  199 aaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacga 276  Q
    ||||||||||||||||||||||||| | |   | ||||||||||||| ||||||||||||| | ||||||||| ||||    
T  15760 aaaatgaggtacttcaaagtaacctatctaccgtaatttcgtctgaagcgacgaaaattcctggctttaaaaagacga 15837  T

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Target: scaffold0991 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 232 - 325
Target Start/End: Original strand, 345 - 438
Alignment:
Q  232 aaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    ||||||||||| |||||| | | ||| |||  ||||||| |||||| |||||  | ||  |||||||||||||||||||||||| |||||||||    
T  345 aaatttcgtctaaaacgatggacatttccggttttaaaagtacgaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgaca 438  T

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Target: scaffold0048 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 7587 - 7620
Alignment:
Q  192 ggaataaaaaatgaggtacttcaaagtaacctct 225  Q
    ||||||||||||||||||||||||||||||||||    
T  7587 ggaataaaaaatgaggtacttcaaagtaacctct 7620  T

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Target: scaffold0048; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 253 - 326
Target Start/End: Original strand, 7622 - 7695
Alignment:
Q  253 aaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgacat 326  Q
    ||||||| |||||||||||    || ||||| || ||| |||||||||||||||||||||||| ||||||||||    
T  7622 aaattcctgactttaaaaaatgcaaaaaaatgggtaagaatagagaaaagtggtcaaaatttggggtatgacat 7695  T

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Target: scaffold0044 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 232 - 325
Target Start/End: Original strand, 81758 - 81851
Alignment:
Q  232 aaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    ||||||||||| |||||||| | ||| |||  ||||||| |||||| |||||  | ||  |||||||||||||||||||||||  |||||||||    
T  81758 aaatttcgtctaaaacgacggacatttccggttttaaaagtacgaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttagggtatgaca 81851  T

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Target: scaffold0044; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 65509 - 65603
Alignment:
Q  231 gaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||||||||||| |||||||| | ||| |||  ||||||| |||||| |||||  | ||  |||||||||||||  ||||||||| |||||||||    
T  65509 gaaatttcgtctaaaacgacggacatttccggttttaaaagtacgaacaaaatgtgtaaaaatagagaaaagtgtacaaaatttggggtatgaca 65603  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 61418 - 61371
Alignment:
Q  199 aaaatgaggtacttcaaagtaacctctttgttgaaatttcgtctgaaa 246  Q
    ||||||||||||||||||||||||||| || |||||||| || |||||    
T  61418 aaaatgaggtacttcaaagtaacctctatgctgaaattttgtttgaaa 61371  T

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Target: scaffold0863 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 343 - 437
Alignment:
Q  231 gaaatttcgtctgaaacgacgaaaattcccgactttaaaaatacgaataaaataggcaaggatagagaaaagtggtcaaaatttgaggtatgaca 325  Q
    |||||||||||| |||||| | | ||| |||  ||||||| |||||| |||||  | ||  ||| |||||||||||||||||||| |||||||||    
T  343 gaaatttcgtctaaaacgatggacatttccggttttaaaagtacgaacaaaatgtgtaaaaataaagaaaagtggtcaaaatttggggtatgaca 437  T

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Target: scaffold1380 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1380
Description:

Target: scaffold1380; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 597 - 556
Alignment:
Q  199 aaaatgaggtacttcaaagtaacctctttgttgaaatttcgt 240  Q
    ||||||||||||| ||||||||||||| ||| ||||||||||    
T  597 aaaatgaggtactccaaagtaacctctctgtcgaaatttcgt 556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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