View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6614_high_2 (Length: 493)
Name: NF6614_high_2
Description: NF6614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6614_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 12 - 471
Target Start/End: Original strand, 34320493 - 34320952
Alignment:
| Q |
12 |
catcatcaaccaaaaattacaagaagaagaagaagataaagggttattagtattaccttttcctttacttgatggaggagcttcggtttttccacaaagg |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34320493 |
catcatcaaccaaaaattacaagaagaagaagaagataaagggttattagtattaccttttcctttacttgatggaggagcttctgtttttccacaaagg |
34320592 |
T |
|
| Q |
112 |
gatttaactattttcccagaacttgtgttaacgagaaaaaacaatgtggtgtgtaaaaggtttgtgtttcaaccctcaatgatcaagtcccttaaggcaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34320593 |
gatttaactattttcccagaacttgtgttaacgagaaaaaacaatgtggtgtgtaaaaggtttgtgtttcaaccctcaatgatcaagtcccttaaggcaa |
34320692 |
T |
|
| Q |
212 |
tagcaacttctagttctatgcattcacctccatcacgtgtacaagcagtaactgcatggatttataagcgtgcagtttcactaatgggattaaatttcca |
311 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34320693 |
tggcaacttctagttctatgcattcacctccatcacgtgtacaagcagtaactgcatggatttataagcgtgcagtttcactaatgggattaaatttcca |
34320792 |
T |
|
| Q |
312 |
gacggctttatttagcatgggtgtagatcttcgcaaaagaatggttcctgcattgtctgaaaagtgtgcaggaaacattgtttggttctcgtctatggtt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34320793 |
gacggctttatttagcatgggtgtagatcttcgcaaaagaatggttcctgcattgtctgaaaagtgtgtaggaaacattgtttggttctcgtctatggtt |
34320892 |
T |
|
| Q |
412 |
gcagataagaaggaaatggaattacatgagttggtatccaaaataaaagaagggttatcg |
471 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34320893 |
gcagataagaaggaaatggaattacatgagttggtatccaaaataaaagaagggttatcg |
34320952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 32 - 470
Target Start/End: Original strand, 34329424 - 34329859
Alignment:
| Q |
32 |
aagaagaagaagaagataaagggttattagtattaccttttcctttacttgatggaggagcttcggtttttccacaaagggatttaactattttcccaga |
131 |
Q |
| |
|
||||| |||||| ||| ||||||||||||| |||||| |||| ||| ||||||||||||||||| | ||||||||||| |||||| ||||||| | ||| |
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|
| T |
34329424 |
aagaaaaagaaggagaaaaagggttattagaattaccctttcatttccttgatggaggagcttcaatgtttccacaaagagatttacctatttttcaaga |
34329523 |
T |
|
| Q |
132 |
acttgtgttaacgagaaaaaacaatgtggtgtgtaaaaggtttgtgtttcaaccctcaatgatcaagtcccttaaggcaatagcaacttctagttctatg |
231 |
Q |
| |
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|||||| | | |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||| || |
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| T |
34329524 |
acttgttcttaagagagaaaacaatgtggtgtgtaaaagatttgtgtttcaaccctcaatgatcaagtcccttaagaaaatggcaacttctagttcggtg |
34329623 |
T |
|
| Q |
232 |
cattcacctccatcacgtgtacaagcagtaactgcatggatttataagcgtgcagtttcactaatgggattaaatttccagacggctttatttagcatgg |
331 |
Q |
| |
|
|||| |||| |||||||||||| || |||||||||||||| || | | |||||| ||| ||||||||||||| |||| | || ||||| |||| |
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|
| T |
34329624 |
catt---ctcccacacgtgtacaagttgtgactgcatggatttacaaatgcacggtttcaataacgggattaaatttcaagacatcattgtttagtatgg |
34329720 |
T |
|
| Q |
332 |
gtgtagatcttcgcaaaagaatggttcctgcattgtctgaaaagtgtgcaggaaacattgtttggttctcgtctatggttgcagataagaaggaaatgga |
431 |
Q |
| |
|
||| ||| |||||||||||||||||||| | ||||||||||| |||| ||| ||||| ||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
34329721 |
ctgttgattttcgcaaaagaatggttcctccgttgtctgaaaaatgtgtagggaacatattttggttctcgtctatgtttgcagataagaaggaaatgga |
34329820 |
T |
|
| Q |
432 |
attacatgagttggtatccaaaataaaagaagggttatc |
470 |
Q |
| |
|
| || | || ||||||| ||||||||||||||||||||| |
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|
| T |
34329821 |
actaaaggatttggtatgcaaaataaaagaagggttatc |
34329859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 400
Target Start/End: Original strand, 34333815 - 34333889
Alignment:
| Q |
326 |
gcatgggtgtagatcttcgcaaaagaatggttcctgcattgtctgaaaagtgtgcaggaaacattgtttggttct |
400 |
Q |
| |
|
|||||| ||| |||||||| | ||||||||||||| |||||||||| |||| || ||||||||| || ||||||| |
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|
| T |
34333815 |
gcatggctgtggatcttcgtagaagaatggttcctccattgtctgataagtctgtaggaaacatagtatggttct |
34333889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 9e-68; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 98 - 470
Target Start/End: Complemental strand, 36622252 - 36621880
Alignment:
| Q |
98 |
tttttccacaaagggatttaactattttcccagaacttgtgttaacgagaaaaaacaatgtggtgtgtaaaaggtttgtgtttcaaccctcaatgatcaa |
197 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||| |||| |||||||||| | || |||||||||||| |||||||| | |||||||| |
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|
| T |
36622252 |
tttttccacaaagggatttacctattttcccagaaaatgtgttaaagagagaaaacaatgttgagtttaaaaggtttgtttttcaacctgcgatgatcaa |
36622153 |
T |
|
| Q |
198 |
gtcccttaaggcaatagcaacttctagttctatgcattcacctccatcacgtgtacaagcagtaactgcatggatttataagcgtgcagtttcactaatg |
297 |
Q |
| |
|
||| ||||||||||| | |||||||||||| |||| || |||| |||| || |||| |||| |||||||||||| |||| ||| || ||| ||||| |
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|
| T |
36622152 |
gtctcttaaggcaatggtaacttctagttccatgcctt---ctcccacacgcgtgcaagttgtaattgcatggatttacaagcatgctgtatcaataatg |
36622056 |
T |
|
| Q |
298 |
ggattaaatttccagacggctttatttagcatgggtgtagatcttcgcaaaagaatggttcctgcattgtctgaaaagtgtgcaggaaacattgtttggt |
397 |
Q |
| |
|
|| ||||||||||||||||||| ||| ||||| ||| |||| |||||||||||||||||| | ||||||||||| |||| ||| ||||| |||||| |
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| T |
36622055 |
gggttaaatttccagacggcttcgttttacatggttgtgaatctacgcaaaagaatggttcctccgttgtctgaaaaatgtgtagggaacatactttggt |
36621956 |
T |
|
| Q |
398 |
tctcgtctatg--gttg-cagataagaaggaaatggaattacatgagttggtatccaaaataaaagaagggttatc |
470 |
Q |
| |
|
| ||||||||| | || || |||||||||||||| || || | |||||||||| ||||||||||||||||||||| |
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|
| T |
36621955 |
tttcgtctatgatgatgacaaataagaaggaaatgaaactagaagagttggtatgcaaaataaaagaagggttatc |
36621880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 49 - 470
Target Start/End: Complemental strand, 36627526 - 36627108
Alignment:
| Q |
49 |
aaagggttattagtattaccttttcctttacttgatggaggagcttcggtttttccacaaagggatttaactattttcccagaacttgtgttaacgagaa |
148 |
Q |
| |
|
|||| ||||||||||| ||| || ||||||||||| ||| || | ||||||||||||||||||| |||| ||||||||| | ||| ||| || | |
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|
| T |
36627526 |
aaagagttattagtatcacccttgagtttacttgatgcaggggcaacaatttttccacaaagggatttgcctatcttcccagaaatggtgataaagaaag |
36627427 |
T |
|
| Q |
149 |
aaaacaatgtggtgtgtaaaaggtttgtgtttcaaccctcaatgatcaagtcccttaaggcaatagcaacttctagttctatgcattcacctccatcacg |
248 |
Q |
| |
|
|||||||||| || | |||||||||||| |||||||| ||||||| ||||| ||||||||||| | ||||||||||| |||||||| ||| | | |
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|
| T |
36627426 |
aaaacaatgtcgtatttaaaaggtttgtttttcaacctgcaatgattaagtctcttaaggcaatggtgacttctagttccatgcattc---tcccacgca |
36627330 |
T |
|
| Q |
249 |
tgtacaagcagtaactgcatggatttataagcgtgcagtttcactaatgggattaaatttccagacggctttatttagcatgggtgtagatcttcgcaaa |
348 |
Q |
| |
|
||||||| ||||||||||||||||| |||| ||| |||||| ||||||| ||||||||||||||||| | ||||||||| ||| |||||||| | | |
|
|
| T |
36627329 |
agtacaagttgtaactgcatggatttacaagcatgccgtttcaataatggggttaaatttccagacggcaatgtttagcatgattgtcgatcttcgtaga |
36627230 |
T |
|
| Q |
349 |
agaatggttcctgcattgtctgaaaagtgtgcaggaaacattgtttggttctcgtctatggttgcagataagaaggaaatggaattacatgagttggtat |
448 |
Q |
| |
|
|||||||||||| ||||||||||| | |||| ||| ||||| ||||||| ||||||||| | ||| ||||||||||||||||| || | || ||||| | |
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|
| T |
36627229 |
agaatggttcctccattgtctgaacattgtgtagggaacatattttggttttcgtctatgttggcaaataagaaggaaatggaactagaagatttggtct |
36627130 |
T |
|
| Q |
449 |
ccaaaataaaagaagggttatc |
470 |
Q |
| |
|
| | ||||||||||||||||| |
|
|
| T |
36627129 |
gccagataaaagaagggttatc |
36627108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 49 - 470
Target Start/End: Complemental strand, 36633098 - 36632680
Alignment:
| Q |
49 |
aaagggttattagtattaccttttcctttacttgatggaggagcttcggtttttccacaaagggatttaactattttcccagaacttgtgttaacgagaa |
148 |
Q |
| |
|
|||| ||||||||||| ||| || ||||||||||| |||||| ||||||||||||||||||| || |||||||||| ||| | || |||| |
|
|
| T |
36633098 |
aaagagttattagtatcacccttaagtttacttgatgcaggagcaataatttttccacaaagggatttgcctgttttcccagagattgcgggaaagagag |
36632999 |
T |
|
| Q |
149 |
aaaacaatgtggtgtgtaaaaggtttgtgtttcaaccctcaatgatcaagtcccttaaggcaatagcaacttctagttctatgcattcacctccatcacg |
248 |
Q |
| |
|
|||||||||| || | |||||||||| | |||||||| |||||||||| || ||||||||||| | ||||||||||| |||||||| ||| ||| |
|
|
| T |
36632998 |
aaaacaatgtcgtatttaaaaggtttttttttcaacctgcaatgatcaaatctcttaaggcaatggtaacttctagtttcatgcattc---tcccacaca |
36632902 |
T |
|
| Q |
249 |
tgtacaagcagtaactgcatggatttataagcgtgcagtttcactaatgggattaaatttccagacggctttatttagcatgggtgtagatcttcgcaaa |
348 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| | |||||||| ||||||| ||||||||||| ||||| | ||| |||||| |||| ||||| | ||| |
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|
| T |
36632901 |
tgtacaagttgtaactgcatggatttacaagcatacagtttcaataatggggttaaatttccaaacggcgtcgttttgcatggctgtaaatcttagaaaa |
36632802 |
T |
|
| Q |
349 |
agaatggttcctgcattgtctgaaaagtgtgcaggaaacattgtttggttctcgtctatggttgcagataagaaggaaatggaattacatgagttggtat |
448 |
Q |
| |
|
||||||| |||| ||||||| ||||| |||||||| ||||| ||||| |||| |||| | ||| |||||||||||||||| || |||||||||| | |
|
|
| T |
36632801 |
agaatggatcctccattgtcggaaaaatgtgcagggaacatagtttgcaattcgtatatgttggcaaataagaaggaaatggagctagatgagttggtct |
36632702 |
T |
|
| Q |
449 |
ccaaaataaaagaagggttatc |
470 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
36632701 |
gcaaaataaaagaagggttatc |
36632680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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