View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6614_high_6 (Length: 253)
Name: NF6614_high_6
Description: NF6614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6614_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 34353580 - 34353807
Alignment:
| Q |
11 |
gttaactctctggtttttatggaaatggtgccccaataattcaaatttgtgatactcattaaacacttaagctaaattcacttgattgttgatttattaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34353580 |
gttaactctctggtttttatggaaatggtgccccaataattcaaatttgtggaactcattaaacacttaagctaaattcacttgattgttgatttattaa |
34353679 |
T |
|
| Q |
111 |
ttttaaagaccaacttactcacgcatacaattacattacaattgtagaatgaaatcgagaatttacttattgtttttgttaacaagttttaggatttact |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34353680 |
ttttaaagaccaacttactcacgcatacaattacattacaattgtagaatgaaatcgagaatttacttattgtttttgttaacaagttttaggatttact |
34353779 |
T |
|
| Q |
211 |
agtttattaggataccatagttttattt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
34353780 |
agtttattaggataccatagttttattt |
34353807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University