View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6614_low_11 (Length: 241)

Name: NF6614_low_11
Description: NF6614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6614_low_11
NF6614_low_11
[»] chr5 (2 HSPs)
chr5 (142-235)||(38351987-38352080)
chr5 (22-121)||(38351854-38351953)
[»] chr3 (2 HSPs)
chr3 (22-85)||(7729566-7729629)
chr3 (22-80)||(31339736-31339794)
[»] chr6 (1 HSPs)
chr6 (22-80)||(18250695-18250753)
[»] chr1 (1 HSPs)
chr1 (154-195)||(51065556-51065597)
[»] chr4 (2 HSPs)
chr4 (24-60)||(13029086-13029122)
chr4 (30-85)||(46695733-46695788)
[»] chr8 (1 HSPs)
chr8 (24-60)||(14539341-14539377)


Alignment Details
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 38351987 - 38352080
Alignment:
Q  142 tttatacacttaaaattaccataatgtccttcaattaatatgaaaattaccaattagtgcatgtattattagttccgaatctattattgatgat 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38351987 tttatacacttaaaattaccataatgtccttcaattaatatgaaaattaccaattagtgcatgtattattagttccgaatcaattattgatgat 38352080  T

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Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 38351854 - 38351953
Alignment:
Q  22 gtgtttctaaattttttgtgtaggcacaagcccacacatgtgccaacatgcatccgtccttgctccagtggcggaaccagggggtgacaaggggcagcca 121  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  38351854 gtgtttctaaattttttgtgttggcacaagcccacacatgtgccaacatgcatccgtccctgctccagtggcggaaccagggggtgacaagggggagcca 38351953  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 7729629 - 7729566
Alignment:
Q  22 gtgtttctaaattttttgtgtaggcacaagcccacacatgtgccaacatgcatccgtccttgct 85  Q
    ||||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||| ||||    
T  7729629 gtgtttctaaaatttttgtgtaggcacaagcccacacatgttacaacatgtatccgtccatgct 7729566  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 31339794 - 31339736
Alignment:
Q  22 gtgtttctaaattttttgtgtaggcacaagcccacacatgtgccaacatgcatccgtcc 80  Q
    |||||||||||  |||||||||||||||||||||||||||  ||||||| |||||||||    
T  31339794 gtgtttctaaaaattttgtgtaggcacaagcccacacatgaaccaacatacatccgtcc 31339736  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 18250753 - 18250695
Alignment:
Q  22 gtgtttctaaattttttgtgtaggcacaagcccacacatgtgccaacatgcatccgtcc 80  Q
    |||||||||||  |||||||||| ||||||||||||||| | |||||||||||||||||    
T  18250753 gtgtttctaaaaattttgtgtagtcacaagcccacacatatcccaacatgcatccgtcc 18250695  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 51065597 - 51065556
Alignment:
Q  154 aaattaccataatgtccttcaattaatatgaaaattaccaat 195  Q
    ||||||||| ||||||||||||||||||||||||||| ||||    
T  51065597 aaattaccacaatgtccttcaattaatatgaaaattatcaat 51065556  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 13029086 - 13029122
Alignment:
Q  24 gtttctaaattttttgtgtaggcacaagcccacacat 60  Q
    ||||||||| |||||||||||||||||||||||||||    
T  13029086 gtttctaaaatttttgtgtaggcacaagcccacacat 13029122  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 46695788 - 46695733
Alignment:
Q  30 aaattttttgtgtaggcacaagcccacacatgtgccaacatgcatccgtccttgct 85  Q
    |||| ||||||||||||||||||||||||  | ||  |||||||||||||||||||    
T  46695788 aaatattttgtgtaggcacaagcccacaccagagcacacatgcatccgtccttgct 46695733  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 14539377 - 14539341
Alignment:
Q  24 gtttctaaattttttgtgtaggcacaagcccacacat 60  Q
    |||||||||  ||||||||||||||||||||||||||    
T  14539377 gtttctaaaaattttgtgtaggcacaagcccacacat 14539341  T

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