View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6614_low_3 (Length: 372)
Name: NF6614_low_3
Description: NF6614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6614_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 10 - 348
Target Start/End: Original strand, 45218063 - 45218401
Alignment:
| Q |
10 |
catcatcacaagaatctttactaggaagagttaaatccagtagaagatgttttttctcttcattttctgtttgtctcttctcagaaaatgagatgttcaa |
109 |
Q |
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| T |
45218063 |
catcatcacaagaatctttactaggaagagttaaatccagtagaagatgttttttctcttcattttctgtttgtctcttctcagaaaatgagatgttcaa |
45218162 |
T |
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| Q |
110 |
attattagataaacatggctctaatcttagaaggtccatatggtaggaaaatatgcaatgattttctttctgtatatgtgatcaaagtttggtttaacaa |
209 |
Q |
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| T |
45218163 |
attattagataaacatggctctaatcttagaaggtccatatggtaggaaaatatgcaatgattttctttctgtatatgtgatcaaagtttggtttaacaa |
45218262 |
T |
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| Q |
210 |
taagaaagaggaagtttgtaaatgatgtaatgtagcagtaaatgctgtgttatatatgtgtagaaaaagatgtcactattttatagttacaaggtcctag |
309 |
Q |
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| T |
45218263 |
taagaaagaggaagtttgtgaatgatgtaatgtagcagtaaatgctgtgttatatatgagtagaaaaagatgtcactattttatagttacaaggtcctag |
45218362 |
T |
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| Q |
310 |
tatagcaagacctaaaaatcaagacattgggtcttgtgg |
348 |
Q |
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| T |
45218363 |
tatagcaagacctaaaaatcaagacattggttcttgtgg |
45218401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 687508 - 687561
Alignment:
| Q |
283 |
cactattttatagttacaaggtcctagtatagcaagacctaaaaatcaagacat |
336 |
Q |
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| T |
687508 |
cactattttacagttacaaggtcttaatatagagagacctaaaaattaagacat |
687561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 704875 - 704928
Alignment:
| Q |
283 |
cactattttatagttacaaggtcctagtatagcaagacctaaaaatcaagacat |
336 |
Q |
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| T |
704875 |
cactattttacagttacaaggtcttaatatagagagacctaaaaattaagacat |
704928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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