View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6614_low_4 (Length: 367)
Name: NF6614_low_4
Description: NF6614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6614_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 353
Target Start/End: Complemental strand, 29786861 - 29786525
Alignment:
| Q |
17 |
aattaatatatccttctgtgtgttggaatggtgaaacaaatgaaacttgttttaataaacattcttgtgtacttgataattaatataactaacttttctt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29786861 |
aattaatatatccttctgtgtgttggaatggtgaaacaaatgaaacttgttttaataaacattcttgtgtacttgataattaatataactaacttttctt |
29786762 |
T |
|
| Q |
117 |
agtcagcacattggcctagtagacaatctcctctagnnnnnnnggtgtaataagaaagatatttattctttccaaaatgtccttcataaaaacctgtttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29786761 |
agtcagcacattggcctagtagacaatctcctctagtttttttggtgtaataagaaagatatttattctttccaaaatgtccttcataaaaacctgtttt |
29786662 |
T |
|
| Q |
217 |
ataagattaaaagatgttactgaaaaatgaaatctaaattaattgaagagtattttagaaatgacattgttaaatagactagaattaattgagttttgct |
316 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29786661 |
ataagaataaaagatgttactgaaaaatgaaatctaaattaattgaagagtattttagaaatgacattgttaaatagactagaattaattgagttttgct |
29786562 |
T |
|
| Q |
317 |
tatattttagaccatcaaactccaaacattttctgtg |
353 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
29786561 |
tatattttagaccatcaaactccaaacattttctgtg |
29786525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 30584199 - 30584244
Alignment:
| Q |
232 |
gttactgaaaaatgaaatctaaattaattgaagagtattttagaaa |
277 |
Q |
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|||| |||||||| ||||||| ||||||||||| |||||||||||| |
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| T |
30584199 |
gttattgaaaaataaaatctatattaattgaagggtattttagaaa |
30584244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 39009950 - 39009987
Alignment:
| Q |
257 |
aattgaagagtattttagaaatgacattgttaaataga |
294 |
Q |
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| T |
39009950 |
aattgaagagtattttaggaatgacattattaaataga |
39009987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 282
Target Start/End: Original strand, 7681042 - 7681072
Alignment:
| Q |
252 |
aaattaattgaagagtattttagaaatgaca |
282 |
Q |
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| T |
7681042 |
aaattaattgaagagtattttagaaatgaca |
7681072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 5931947 - 5931906
Alignment:
| Q |
237 |
tgaaaaatgaaatctaaattaattgaagagtattttagaaat |
278 |
Q |
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|||||||| ||||||||||||||||||| ||| ||||||||| |
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| T |
5931947 |
tgaaaaataaaatctaaattaattgaagggtagtttagaaat |
5931906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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