View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6614_low_6 (Length: 359)

Name: NF6614_low_6
Description: NF6614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6614_low_6
NF6614_low_6
[»] chr3 (14 HSPs)
chr3 (17-341)||(967663-967997)
chr3 (42-144)||(1931903-1932005)
chr3 (31-144)||(3745169-3745282)
chr3 (39-179)||(955518-955653)
chr3 (51-144)||(2651170-2651263)
chr3 (48-144)||(1937720-1937816)
chr3 (48-144)||(3753785-3753881)
chr3 (48-144)||(4142892-4142988)
chr3 (30-144)||(7432821-7432935)
chr3 (25-143)||(13478821-13478939)
chr3 (47-144)||(1891803-1891900)
chr3 (48-144)||(4158702-4158798)
chr3 (41-144)||(1941324-1941427)
chr3 (187-245)||(955440-955498)
[»] chr8 (2 HSPs)
chr8 (41-144)||(19727118-19727221)
chr8 (30-143)||(31145142-31145255)
[»] chr5 (8 HSPs)
chr5 (27-141)||(23764991-23765105)
chr5 (27-141)||(23814839-23814953)
chr5 (48-141)||(23774825-23774918)
chr5 (48-141)||(23861778-23861871)
chr5 (48-141)||(23754791-23754884)
chr5 (48-141)||(23820246-23820339)
chr5 (27-141)||(23691163-23691277)
chr5 (48-144)||(11081380-11081476)
[»] chr4 (1 HSPs)
chr4 (27-143)||(20020524-20020640)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 341
Target Start/End: Complemental strand, 967997 - 967663
Alignment:
Q  17 aaggtgaatgttggcaaatttagaatcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacataga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  967997 aaggtgaatgttggcaaatttagaatcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacataga 967898  T
Q  117 atttctggaatgagatcgaaaggaagag----------cggcatgtgaagcgatggtgatgatgttagggtttcagttggcctcctctcaatggagatta 206  Q
    ||||||||||||||||||||||||||||          ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  967897 atttctggaatgagatcgaaaggaagagtcggaagtggcggcatgtgaagcgatggtgacgatgttagggtttcagttggcctcctctcaatggagattg 967798  T
Q  207 ttgcttcggtcagtaatggagaagaaacggcgtcgtcgtattttgcttggtagcccttgtcgctacccatgttggagaagaaactgtgacctgcaccgat 306  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  967797 ctgcttcggtcagtaatggagaagaaacggcatcgtcgtattttgcttggcagcccttgtcgctacccatgttggagaagaaactgtgaactgcaccgat 967698  T
Q  307 ttgagagaggctgagcgaaggaagtaggttagaga 341  Q
    |||||||||||||||||||||||||||||||||||    
T  967697 ttgagagaggctgagcgaaggaagtaggttagaga 967663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 1931903 - 1932005
Alignment:
Q  42 tcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaa 141  Q
    |||| ||||||||||||| | |||||||| || || ||||||  ||  |||||||| || ||||||||||| || |||||||||||||||||||||||||    
T  1931903 tcagagattagagaattctatgacttgcaaacgcaccggaatctcacaaggagcttcacggatagcctacagaggatttctggaatgagatcgaaaggaa 1932002  T
Q  142 gag 144  Q
    |||    
T  1932003 gag 1932005  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 3745282 - 3745169
Alignment:
Q  31 caaatttagaatcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgag 130  Q
    ||||||| | |||||  |||||||||||||| |||||||| |||||||||||||| | || || ||| |||| |||||||||||  |||||||||||||     
T  3745282 caaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaaggatgaacttcaccggtagcctacataagatttctggaatgac 3745183  T
Q  131 atcgaaaggaagag 144  Q
     ||| |||||||||    
T  3745182 gtcggaaggaagag 3745169  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 179
Target Start/End: Complemental strand, 955653 - 955518
Alignment:
Q  39 gaatcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaag 138  Q
    ||||||| ||| ||||||||||| ||||| || || ||||| | ||| | |||||||||||||  ||||||||| || ||||||| || |||||| ||||    
T  955653 gaatcagagataagagaattccaagacttacaaacgcatcgaagttgaaggaggagctttacctgtagcctacagaggatttctgaaacgagatcaaaag 955554  T
Q  139 gaagagcggcatgtgaagcgatggtgatgatgttagggttt 179  Q
    |||||     ||| |||| ||||||||||||||||||||||    
T  955553 gaaga-----atgggaagtgatggtgatgatgttagggttt 955518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 2651170 - 2651263
Alignment:
Q  51 agagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaagag 144  Q
    ||||||||||| | |||||| |||||||| | ||| | |||||||||||||| || ||||| |||||||||| |||| || |||||||||||||    
T  2651170 agagaattccatggcttgcagacacatcgaagttgaaagaggagctttaccggtaacctacgtagaatttcttgaataaggtcgaaaggaagag 2651263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 1937720 - 1937816
Alignment:
Q  48 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaagag 144  Q
    |||||||||||| | |||||||| || || ||||||  || |||||| || |||||||||||| | || ||||||||||||||||| ||||||||||    
T  1937720 attagagaattctatgacttgcaaacgcaccggaatctcaggaggagtttcaccgatagcctagagaggatttctggaatgagatcaaaaggaagag 1937816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 3753881 - 3753785
Alignment:
Q  48 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaagag 144  Q
    |||||| ||||||| |||||||| |||||||||||| | | || || |||||||| || ||||||||| |||||||||||||  ||| |||||||||    
T  3753881 attagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagag 3753785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 4142892 - 4142988
Alignment:
Q  48 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaagag 144  Q
    |||||||||||||| |||||||| |||||||||||| | | || || |||||| | |||||||||||  |||||||||||||  ||| |||||||||    
T  4142892 attagagaattccatgacttgcaaacacatcggaatcgaaggatgaactttactggtagcctacatatgatttctggaatgacgtcggaaggaagag 4142988  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 7432821 - 7432935
Alignment:
Q  30 gcaaatttagaatcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatga 129  Q
    ||||| || |||| || ||| |||||||||||||||||||| |  ||||| ||||| | ||| ||||| ||||  |||||| | || ||||||| |||||    
T  7432821 gcaaaattggaattagagatcagagaattccacgacttgcagatgcatcgcaattgaaggagaagcttcaccggaagcctagagagtatttctgtaatga 7432920  T
Q  130 gatcgaaaggaagag 144  Q
    |||||||||||||||    
T  7432921 gatcgaaaggaagag 7432935  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 13478939 - 13478821
Alignment:
Q  25 tgttggcaaatttagaatcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctgg 124  Q
    |||||||||||||   ||||||||| | |||||||||| |||| |  |||||||| | ||| | ||||||||| || | |||||||||||||||||||      
T  13478939 tgttggcaaatttgcgatcagtgataaaagaattccacaacttactgacacatcgaagttgaaggaggagcttcacgggtagcctacatagaatttctat 13478840  T
Q  125 aatgagatcgaaaggaaga 143  Q
    |||||| |||| |||||||    
T  13478839 aatgaggtcgagaggaaga 13478821  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 1891803 - 1891900
Alignment:
Q  47 gattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaagag 144  Q
    ||||||||||||||| |||||||| ||| |||||| ||| | ||||||||| || |  || |||  ||||||||||| ||||||||| ||||||||||    
T  1891803 gattagagaattccatgacttgcagacagatcggagttgaaggaggagcttcactggaagtctagttagaatttctgaaatgagatccaaaggaagag 1891900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 4158702 - 4158798
Alignment:
Q  48 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaagag 144  Q
    |||||||||||||| |||||||| |||||| ||||| | | || || |||||||| |||||||||||  |||||| ||||||  ||| |||||||||    
T  4158702 attagagaattccatgacttgcaaacacattggaatcggaggatgaactttaccggtagcctacatatgatttctagaatgacgtcggaaggaagag 4158798  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 1941324 - 1941427
Alignment:
Q  41 atcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaagga 140  Q
    ||||||||| |||||||||||||||||||| || || |||||||| | ||| ||||| || |  || ||||| || || ||||  |||||||| ||||||    
T  1941324 atcagtgataagagaattccacgacttgcaaacgcaccggaattgaaggagaagcttcacggggagtctacagaggatctctgagatgagatccaaagga 1941423  T
Q  141 agag 144  Q
    ||||    
T  1941424 agag 1941427  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 955498 - 955440
Alignment:
Q  187 cctcctctcaatggagattattgcttcggtcagtaatggagaagaaacggcgtcgtcgt 245  Q
    |||||||| | |||||||| || ||| |||| | |||||||||||||||||||||||||    
T  955498 cctcctcttagtggagattgtttctttggtcgggaatggagaagaaacggcgtcgtcgt 955440  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 19727221 - 19727118
Alignment:
Q  41 atcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaagga 140  Q
    ||||| ||||||||||||| |||||||||| ||||||||||| |||| |||||  || || | |||||||| ||||||||||||||||||||||||||||    
T  19727221 atcagagattagagaattcaacgacttgcaaacacatcggaactgcaagaggaatttcacgggtagcctacttagaatttctggaatgagatcgaaagga 19727122  T
Q  141 agag 144  Q
    ||||    
T  19727121 agag 19727118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 31145142 - 31145255
Alignment:
Q  30 gcaaatttagaatcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatga 129  Q
    |||||||| | |||||  || ||||||||||| |||||||| |||||  ||||||| |||||||  || || |  || ||||| || || |||| |||||    
T  31145142 gcaaatttgggatcagatataagagaattccatgacttgcaaacacactggaattgtatgaggaatttcacagggagtctacagaggatatctgtaatga 31145241  T
Q  130 gatcgaaaggaaga 143  Q
    ||||||||||||||    
T  31145242 gatcgaaaggaaga 31145255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 23764991 - 23765105
Alignment:
Q  27 ttggcaaatttagaatcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaa 126  Q
    ||||| ||||| | |||||  ||||||||||||||| |||||||||||||||| |||||||||||| | || || |  |||||| | |||||||||||||    
T  23764991 ttggcgaatttgggatcagaaattagagaattccaccacttgcacacacatcgaaattgcatgaggggtttcacagggagcctatagagaatttctggaa 23765090  T
Q  127 tgagatcgaaaggaa 141  Q
    |||||||||||||||    
T  23765091 tgagatcgaaaggaa 23765105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 23814839 - 23814953
Alignment:
Q  27 ttggcaaatttagaatcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaa 126  Q
    ||||| ||||| | |||||  ||||||||||||||| |||||||||||||||| |||||||||||| | || || |  |||||| | |||||||||||||    
T  23814839 ttggcgaatttgggatcagaaattagagaattccaccacttgcacacacatcgaaattgcatgaggggtttcacagggagcctatagagaatttctggaa 23814938  T
Q  127 tgagatcgaaaggaa 141  Q
    |||||||||||||||    
T  23814939 tgagatcgaaaggaa 23814953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 141
Target Start/End: Original strand, 23774825 - 23774918
Alignment:
Q  48 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaa 141  Q
    ||||||||||||||| |||||||||||||||| |||||||||||| | || || |  ||||||   ||||||||||||||||||||||||||||    
T  23774825 attagagaattccaccacttgcacacacatcgaaattgcatgaggggtttcacggggagcctatggagaatttctggaatgagatcgaaaggaa 23774918  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 141
Target Start/End: Original strand, 23861778 - 23861871
Alignment:
Q  48 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaa 141  Q
    ||||||||||||||| |||||||||||||||| |||||||||||| | || || |  ||||||   ||||||||||||||||||||||||||||    
T  23861778 attagagaattccaccacttgcacacacatcgaaattgcatgaggggtttcacggggagcctatggagaatttctggaatgagatcgaaaggaa 23861871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 141
Target Start/End: Original strand, 23754791 - 23754884
Alignment:
Q  48 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaa 141  Q
    ||||||||||||||| |||||||||||||||| |||||||||||  | || || |  ||||||   ||||||||||||||||||||||||||||    
T  23754791 attagagaattccaccacttgcacacacatcgaaattgcatgagaggtttcacggggagcctatggagaatttctggaatgagatcgaaaggaa 23754884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 141
Target Start/End: Original strand, 23820246 - 23820339
Alignment:
Q  48 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaa 141  Q
    ||||||||||||||| |||||||||||||||| |||||||||||  | || || |  ||||||   ||||||||||||||||||||||||||||    
T  23820246 attagagaattccaccacttgcacacacatcgaaattgcatgagaggtttcacggggagcctatggagaatttctggaatgagatcgaaaggaa 23820339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 23691277 - 23691163
Alignment:
Q  27 ttggcaaatttagaatcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaa 126  Q
    ||||| ||||| | |||||  |||||||||||||||  ||||||||||||||| |||||||||||| | || ||||  |||||    ||||||| |||||    
T  23691277 ttggcgaatttgggatcagaaattagagaattccacagcttgcacacacatcgaaattgcatgaggggtttcaccggaagcctgtggagaatttatggaa 23691178  T
Q  127 tgagatcgaaaggaa 141  Q
    |||||||| ||||||    
T  23691177 tgagatcgcaaggaa 23691163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 11081476 - 11081380
Alignment:
Q  48 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaagag 144  Q
    |||| |||||| ||||||||||| |||||| ||||| | | || || ||| |||| || ||||||||| |||||| ||||||||||| |||||||||    
T  11081476 attaaagaatttcacgacttgcaaacacattggaatcgaaggatgaacttaaccggtaacctacataggatttctagaatgagatcggaaggaagag 11081380  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 20020524 - 20020640
Alignment:
Q  27 ttggcaaatttagaatcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaa 126  Q
    |||| |||||||| || || ||| ||||||||||| || || || |||||||| | ||| | ||||||||| || | || |||||| |||||||||  ||    
T  20020524 ttggaaaatttaggatgagagatgagagaattccatgaattacatacacatcgaagttgaaggaggagcttcactggtaacctacacagaatttcttcaa 20020623  T
Q  127 tgagatcgaaaggaaga 143  Q
    |||| ||||||||||||    
T  20020624 tgaggtcgaaaggaaga 20020640  T

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