View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6614_low_7 (Length: 287)
Name: NF6614_low_7
Description: NF6614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6614_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 8124437 - 8124692
Alignment:
| Q |
19 |
gattctaccaaatcgccgtcaattcagacatgtactaaattaataaaaaacatgattctgtaacttgaaatgataccttctgacagaataacaatgaaag |
118 |
Q |
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| T |
8124437 |
gattctaccaaatcgccgtcaattcagacatgtactaaattaataaaaaacatgattgtgtaacttgaaatgataccttctgacagaataacaatgaaag |
8124536 |
T |
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| Q |
119 |
aaggattttaccttttgggtttggacaacacatcaccaacatttgcttctgctatgcaaaattctgttccagcccttacctttctcatggctgtgatatt |
218 |
Q |
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| T |
8124537 |
aaggattttaccttttgggtttggacaacacatcaccaacatttgcttctgctatgcaaaattctgttccagcccttacctttctcatggctgtgatatt |
8124636 |
T |
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| Q |
219 |
aaggcaagctataacactttaactctagagcttaaagttcagaccttttttgatga |
274 |
Q |
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| T |
8124637 |
aaggcaagctataacactttaactctagagcttaaagttcagaccttttttgatga |
8124692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 52730515 - 52730445
Alignment:
| Q |
139 |
ttggacaacacatcaccaacatttgcttctgctatgcaaaattctgttccagcccttacctttctcatggc |
209 |
Q |
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| T |
52730515 |
ttggacaacacatctccaacctttgcatcagctatacagaattctgtaccagccattacatttgtcatggc |
52730445 |
T |
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