View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6615_low_1 (Length: 727)
Name: NF6615_low_1
Description: NF6615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6615_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 66 - 407
Target Start/End: Complemental strand, 32856328 - 32855987
Alignment:
| Q |
66 |
aatgacaaaggttagtaattagttgttaaatttagatctatttctttgtccacgttcgaacccagaacccccaactctttctctcttaactcaaagcaag |
165 |
Q |
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| T |
32856328 |
aatgacaaaggttagtaattagttgttaaatttagatctatttctctgtccacgttcgaacccagaacccccaactctttctctcttaactcaaagcaag |
32856229 |
T |
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| Q |
166 |
agctatccaaccctctctcatccgtggtttctaatttggggaaaatgttagattagaaatagattaaaaagtgtatctgtttctacataaattgtgcaga |
265 |
Q |
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| T |
32856228 |
agctatccaaccctctctcatccgtggtttctaatttggggaaaatgttagattagaaatagattaaaaagtgtatctgtttctacataaattgtgcaga |
32856129 |
T |
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| Q |
266 |
aattaaagtgtgatttctttccaaagagagatgatttattgggtgatggtagtagccacagagtgcagaacagttacagtgctttgaagatannnnnnnn |
365 |
Q |
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| T |
32856128 |
aattaaagtgtgatttctttccaaagagagatgatttattgggtgacggtagtagccacagagtgcagaacagttacagtgctttgaagatattttcttt |
32856029 |
T |
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| Q |
366 |
nnnnnnnncttccagctggagatattatcttagttcaaaggg |
407 |
Q |
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| T |
32856028 |
ttgtttttcttccagctggagatattatcttagttcaaaggg |
32855987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 441 - 710
Target Start/End: Complemental strand, 32855953 - 32855684
Alignment:
| Q |
441 |
agggaaaaataaaactacaagcgtgggagatgtggtcttgcactgcacacattcctgctttcctgttgttgcatttagtaacctttggccaccccaacag |
540 |
Q |
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| T |
32855953 |
agggaaaaataaaactacaagcgtgggagatgtggtcttgcactgcacacattcctgctttcctgttgttgcatttagtaacctttggccaccccaacag |
32855854 |
T |
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| Q |
541 |
gtagcacttgatattttcagctggaaaggacctgagtatcagaatgactaatgatgatttgagcatgtagagcagggtaactcttctcttaattgatgtg |
640 |
Q |
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| T |
32855853 |
gtagcacttgatattttcagctggaaaggacctgagtatcagaatgactaatgatgatttgagcatgtagagcagggtaactcttctcttgattgatgtg |
32855754 |
T |
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| Q |
641 |
agcttttaaactttataatacagtctcaaagcaaatcacaattcaacaccagacacgccccggattccac |
710 |
Q |
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| T |
32855753 |
agcttttaaactttataatacagtctcaaaacaaatcacaattcaacaccagacacgccccggattccac |
32855684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 506 - 691
Target Start/End: Complemental strand, 32850489 - 32850285
Alignment:
| Q |
506 |
ttgttgcatttagtaacctttggccaccccaacaggtagcacttgatattttcagctggaaaggacctga--------------gtatcagaatgactaa |
591 |
Q |
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| T |
32850489 |
ttgttgcacttagtaacttttagcaaccccaacaggtagcagttggtattttcagctggaaaggacctgataatccctaaagttgtatcagcatgactaa |
32850390 |
T |
|
| Q |
592 |
tgatgatttgagcatgtagag--------cagggtaactcttctcttaattgatgtgagcttttaaactttataatacagtctcaaagcaaatcacaatt |
683 |
Q |
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| T |
32850389 |
tgat---ttgagcatgtagaggcgtagagcagggtaactcttctctcaattgatgtgagcttttaaactttataatacagtctcaaaacaaatcacaatt |
32850293 |
T |
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| Q |
684 |
caacacca |
691 |
Q |
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| T |
32850292 |
caacacca |
32850285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 218 - 319
Target Start/End: Complemental strand, 32850766 - 32850670
Alignment:
| Q |
218 |
ttagaaatagattaaaaagtgtatctgtttctacataaattgtgcagaaattaaagtgtgatttctttccaaagagagatgatttattgggtgatggtag |
317 |
Q |
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|||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||| | || |||||| |||||||||| | ||||| ||||| |
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| T |
32850766 |
ttagaaatagatgaaaaagtgtagctgtttctgcataaattgtgcag-----gaagtgtgattaccttgcaaagatagatgatttactaggtgacggtag |
32850672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 442 - 483
Target Start/End: Complemental strand, 32850561 - 32850520
Alignment:
| Q |
442 |
gggaaaaataaaactacaagcgtgggagatgtggtcttgcac |
483 |
Q |
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| T |
32850561 |
gggaaaaataaaactacaatcgtgggagatggggtcttgcac |
32850520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 374 - 407
Target Start/End: Complemental strand, 32850625 - 32850592
Alignment:
| Q |
374 |
cttccagctggagatattatcttagttcaaaggg |
407 |
Q |
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| T |
32850625 |
cttccagctggagatattatcttagttcaaaggg |
32850592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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