View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6615_low_2 (Length: 382)
Name: NF6615_low_2
Description: NF6615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6615_low_2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 112 - 382
Target Start/End: Complemental strand, 26461484 - 26461214
Alignment:
| Q |
112 |
tcacataacttgttacattagtttactagatttgatattaattattagcacacggtccccaatcaataattcttctatacaccacctatattgatgtaaa |
211 |
Q |
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| T |
26461484 |
tcacataacttgttacattagtttactagatttgatattaattattagcacacggtccccaatcaataattcttctatacaccacctatattgatgtaaa |
26461385 |
T |
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| Q |
212 |
cttggctttaaattgactttcataacaaccataagttagttgagtagcccttcttaaaaaggaagaccctatgggatgctaatatacccattttcattag |
311 |
Q |
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| T |
26461384 |
cttggctttaaattgactttcataacaaccataagttagttgagtagcccttcttaaaaaggaagaccctatgggatgctaatatacccattttcattag |
26461285 |
T |
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| Q |
312 |
tgcacagtttcatattttgttgaggttgtgaaagagagtgagaaatggggaattgtcaaacaatagatgct |
382 |
Q |
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| T |
26461284 |
tgcacagtttcatattttgttgaggttgtgaaagagagtgagaaatggggaattgtcaaacaatagatgct |
26461214 |
T |
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Back To:
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Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 26461578 - 26461523
Alignment:
| Q |
18 |
caccctattcataggcctatgccggttccgattagtcatcatcctcaaacatatac |
73 |
Q |
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| T |
26461578 |
caccctattcataggcctatgccggttccgattagtcatcatcctcaaacatatac |
26461523 |
T |
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