View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6615_low_4 (Length: 296)
Name: NF6615_low_4
Description: NF6615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6615_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 286
Target Start/End: Original strand, 14773225 - 14773491
Alignment:
| Q |
20 |
agttgcctcttggatagccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtcttctccatgacgagca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14773225 |
agttgcctcttggatagccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtcttctccatgacgagca |
14773324 |
T |
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| Q |
120 |
atttttaacaagagttcaaatgatgccttccttgaagactcatcagacctaaaattaatatttagtcagctgagctctatgcaaccaataattttggtca |
219 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14773325 |
atttttaacaagagttcagatgatgccttccttgaagtctcatcagacctaaaattaatatttagtcagctgagctctatgcaaccaataattttagtca |
14773424 |
T |
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| Q |
220 |
tctgagctctagacaccgagggagtaatttaaaataattaggttgaaaaatcaacccataatctgtg |
286 |
Q |
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| T |
14773425 |
gctgagctctagacaccgagggagtaatttaaaataattaggttgaaaaatcaacccataatctgtg |
14773491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 15014629 - 15014800
Alignment:
| Q |
20 |
agttgcctcttggatagccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtcttctccatgacgagca |
119 |
Q |
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||||| |||||| |||||||||||||||||||| |||||||| ||| || ||||| |||||||||| |||||||| || |||||||||||||||| |||| |
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| T |
15014629 |
agttgtctcttgtatagccattgtaaatgaatcctgatcatcattaactgcaactgtaagacagggcacctgaaagccggtgtcttctccatgaccagca |
15014728 |
T |
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| Q |
120 |
atttttaacaagagttcaaatgatgccttccttgaagactcatcagacctaaaattaatatttagtcagctgagc |
194 |
Q |
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| T |
15014729 |
atttttgacaagagttcagatgatgtcttccatgaaga---atcagacctaaaattaatatttagtcagctgagc |
15014800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 37 - 194
Target Start/End: Original strand, 15047407 - 15047564
Alignment:
| Q |
37 |
ccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtcttctccatgacgagcaatttttaacaagagttc |
136 |
Q |
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|||||||||||||||||| ||||||||||||| | || |||||||| || |||||||| ||||| ||||| || || | | | |||||||||||||| || |
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| T |
15047407 |
ccattgtaaatgaatctttatcatctttagctgctaccataagacaaggcacctgaaagccagtatcttccccgtgtctaacgatttttaacaagagctc |
15047506 |
T |
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| Q |
137 |
aaatgatgccttccttgaagactcatcagacctaaaattaatatttagtcagctgagc |
194 |
Q |
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| | |||||||||| ||||||||| |||||||| | || |||| |||||||| ||||| |
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| T |
15047507 |
atacgatgccttccatgaagactcgtcagacctgagatgaataattagtcagttgagc |
15047564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 197
Target Start/End: Original strand, 17879677 - 17879839
Alignment:
| Q |
37 |
ccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtcttctccatgacgagcaatttttaacaagagttc |
136 |
Q |
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|||||||||||||||| | ||||||||||||| | || |||||||| || | || ||| ||||| | |||||| ||||||||||| ||||||||| |
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| T |
17879677 |
ccattgtaaatgaatccttatcatctttagctgccaccataagacaaggcatctcaaagccagtataagttccatgctcagcaatttttaccaagagttc |
17879776 |
T |
|
| Q |
137 |
aaatgatgccttccttgaagactcatcagacc--taaaattaatatttagtcagctgagctct |
197 |
Q |
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| ||| || | || ||||||||||||||||| ||| || ||||| ||||||||| |||||| |
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| T |
17879777 |
atatgcagcatcccatgaagactcatcagacctataagatgaatatctagtcagctaagctct |
17879839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 51365490 - 51365658
Alignment:
| Q |
20 |
agttgcctcttggatagccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtcttctccatgacgagca |
119 |
Q |
| |
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||||| |||||| | |||||||| |||||||| || |||||||||||| |||||||||| ||||| |||| ||| ||||| | |||||||||||||||| |
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| T |
51365490 |
agttgactcttgtacagccattggaaatgaatactggtcatctttagctgcaactataaggcagggcaccttaaagccagtatgttctccatgacgagca |
51365589 |
T |
|
| Q |
120 |
atttttaacaagagttcaaatgatgccttccttgaagactcatcagacctaaaattaatatttagtcag |
188 |
Q |
| |
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|||| || | ||||| | | |||||||||| ||| ||||||| ||||||||||| ||||||||||||| |
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| T |
51365590 |
atttctacaaggagtttagacgatgccttccatgaggactcattagacctaaaatgaatatttagtcag |
51365658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 185
Target Start/End: Original strand, 54158218 - 54158368
Alignment:
| Q |
35 |
agccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtcttctccatgacgagcaatttttaacaag-ag |
133 |
Q |
| |
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|||||||||||||||| | || ||||||||||| |||||||||| || || |||| ||| |||| |||||||||||| |||||| | | ||||| || |
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| T |
54158218 |
agccattgtaaatgaaacctggtcatctttagcagcaactataaggcaaggcacctcaaagccagaatcttctccatgagcagcaatatct-acaagaag |
54158316 |
T |
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| Q |
134 |
ttcaaatgatgccttccttgaagactcatcagacctaaaattaatatttagt |
185 |
Q |
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|| | |||||||| ||| ||| ||||||||||||||| ||| |||||||||| |
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| T |
54158317 |
tttagatgatgccctccatgaggactcatcagacctacaataaatatttagt |
54158368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 53869042 - 53868932
Alignment:
| Q |
34 |
tagccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtcttctccatgacgagcaatttttaacaagag |
133 |
Q |
| |
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||||||||| ||||||||| || |||||||||||| |||||||||| || || |||| ||| ||| | |||||||| ||||||||||||| || | ||| |
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| T |
53869042 |
tagccattggaaatgaatcctgttcatctttagctgcaactataaggcaaggcacctcaaagccattatcttctccgtgacgagcaatttctacaaggag |
53868943 |
T |
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| Q |
134 |
ttcaaatgatg |
144 |
Q |
| |
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|||| |||||| |
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| T |
53868942 |
ttcagatgatg |
53868932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 36877343 - 36877159
Alignment:
| Q |
20 |
agttgcctcttggatagccattgtaaatgaatcttgatcatctttagctacaactataagacagggtacctgaaaaccagtgtcttctccatgacgagca |
119 |
Q |
| |
|
||||| |||||| ||||||| || ||||| ||| ||||||| |||||| |||||||||||||||| |||| | | ||||| | ||||||||||| |||| |
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| T |
36877343 |
agttgactcttgtatagccaatgcaaatggatccagatcatccttagctgcaactataagacagggcacctcatagccagtattttctccatgaccagca |
36877244 |
T |
|
| Q |
120 |
atttttaacaagagttcaaatgatgccttccttgaagactcatcagacctaaaattaatatttagtcagctgagctctatgcaac |
204 |
Q |
| |
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|| | || |||||| ||| ||||| | ||| ||||||||||||||||||||||| ||| |||| |||||| |||| ||| |||| |
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| T |
36877243 |
atctgtaccaagagatcatatgatactctccatgaagactcatcagacctaaaataaatttttaatcagctaagctttatacaac |
36877159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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