View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6615_low_5 (Length: 285)
Name: NF6615_low_5
Description: NF6615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6615_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 12934883 - 12934661
Alignment:
| Q |
7 |
gacatcatcatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcatt |
106 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934883 |
gacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcatt |
12934784 |
T |
|
| Q |
107 |
cccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcagtggttgataaggctacacattttt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12934783 |
cccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcagttgttgataaggctacacattttt |
12934684 |
T |
|
| Q |
207 |
gcaatttagattgccaagataca |
229 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
12934683 |
gcaatttagattgccaagataca |
12934661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 17123638 - 17123537
Alignment:
| Q |
19 |
ctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataac--------gtacctttcctgcttcattccca |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17123638 |
ctttgtacaagagtggtacatcgcattcttactcgaatccaaaacgctttgattatcgcaatggataacgacatgaagtacctttcctgcttcattccca |
17123539 |
T |
|
| Q |
111 |
at |
112 |
Q |
| |
|
|| |
|
|
| T |
17123538 |
at |
17123537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 14178153 - 14177931
Alignment:
| Q |
7 |
gacatcatcatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcatt |
106 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178153 |
gacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcatt |
14178054 |
T |
|
| Q |
107 |
cccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcagtggttgataaggctacacattttt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
14178053 |
cccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcggttgttgataaggctacacattttt |
14177954 |
T |
|
| Q |
207 |
gcaatttagattgccaagataca |
229 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
14177953 |
gcaatttagattgccaagataca |
14177931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 28607720 - 28607942
Alignment:
| Q |
7 |
gacatcatcatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcatt |
106 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607720 |
gacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcatt |
28607819 |
T |
|
| Q |
107 |
cccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcagtggttgataaggctacacattttt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
28607820 |
cccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcggttgttgataaggctacacattttt |
28607919 |
T |
|
| Q |
207 |
gcaatttagattgccaagataca |
229 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
28607920 |
gcaatttagattgccaagataca |
28607942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 15300669 - 15300449
Alignment:
| Q |
7 |
gacatcatcatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcatt |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15300669 |
gacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcacaatggataacgtacctttcctgcttcatt |
15300570 |
T |
|
| Q |
107 |
cccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcagtggttgataaggctacacattttt |
206 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15300569 |
cccaattgatcatgaattctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcagttgttgataaggctacacattttt |
15300470 |
T |
|
| Q |
207 |
gcaatttagattgccaagata |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
15300469 |
gcaatttagattgccaagata |
15300449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University