View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6615_low_6 (Length: 260)
Name: NF6615_low_6
Description: NF6615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6615_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 34594181 - 34593952
Alignment:
| Q |
14 |
cataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggtaaggaatca |
113 |
Q |
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| T |
34594181 |
cataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggtaaggaatca |
34594082 |
T |
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| Q |
114 |
atggaaaaaacagaaactcactatattgatatgtattgttcaattactttgcttcattttccatattgtgatcaaaattattttactttctccctagcat |
213 |
Q |
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| T |
34594081 |
atggaaaaaacagaaactcactatattgatatgtattgttcaattactttgcttcattttccatattgtgatcaaaattattttactttctccctagcat |
34593982 |
T |
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| Q |
214 |
gacttctatagcagattcaaacaataaatg |
243 |
Q |
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| T |
34593981 |
gacttctatagcagattcaaacaataaatg |
34593952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 34578478 - 34578391
Alignment:
| Q |
17 |
aggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggt |
104 |
Q |
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| T |
34578478 |
aggggatgggaagatcctgcaacgtgggccaaaagtgtgggaaatagttggagaaccacgggtgatatagaagataattggaagaggt |
34578391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 32601133 - 32601041
Alignment:
| Q |
14 |
cataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggtaa |
106 |
Q |
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| T |
32601133 |
cataggggatgggaagatcctgctacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattgaagataactggaataggtaa |
32601041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 32590662 - 32590570
Alignment:
| Q |
14 |
cataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggtaa |
106 |
Q |
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| T |
32590662 |
cataggggaaaggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtaa |
32590570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 24883380 - 24883439
Alignment:
| Q |
50 |
agtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggtaagga |
109 |
Q |
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| T |
24883380 |
agtgtgggaaatagttggagaacaacatcagatatcgaagataaatgggataggtgagga |
24883439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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