View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6615_low_7 (Length: 257)
Name: NF6615_low_7
Description: NF6615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6615_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 47712884 - 47713121
Alignment:
| Q |
1 |
gacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaatca |
100 |
Q |
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| T |
47712884 |
gacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaatca |
47712983 |
T |
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| Q |
101 |
ttgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaacttaa |
200 |
Q |
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| T |
47712984 |
ttgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaacttaa |
47713083 |
T |
|
| Q |
201 |
gacgagaatcacttgatgcagctatttcttttagtttc |
238 |
Q |
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| T |
47713084 |
gacgagaatcacttgatgcagctatttctctcagtttc |
47713121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 47759802 - 47760036
Alignment:
| Q |
4 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaatcattg |
103 |
Q |
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| T |
47759802 |
ttcatatctgatattacaacttggtttgagaactctaccaccaatcttgttattacaacaacttggaatatctgagatagcaccatctaaacaattattg |
47759901 |
T |
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| Q |
104 |
caatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaacttaagac |
203 |
Q |
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| T |
47759902 |
caatcttgctctgacaaatcaggtgtgcactgaacaagaccatatatggtttgaaaattcaaatttacatcagttgcattatctgtagcaaatttacgac |
47760001 |
T |
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| Q |
204 |
gagaatcacttgatgcagctatttcttttagtttc |
238 |
Q |
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| T |
47760002 |
gagaatcacttgatgcagctttctctttcagtttc |
47760036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 47745479 - 47745704
Alignment:
| Q |
4 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaatcattg |
103 |
Q |
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|||||||||||||||||||||| |||||| |||||||| |||||||||||||||| | || ||||| ||||||| |||||| |||||||||||||||| |
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| T |
47745479 |
ttcatatctaatattacaacttagtttgagaactctaccaccaatcttgttataaaaaaaacttggagtttctgaaatagcacgctctaaacaatcattg |
47745578 |
T |
|
| Q |
104 |
caatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaacttaagac |
203 |
Q |
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| T |
47745579 |
caatcttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttcaaaattcaa---------agttgcattagcggtagcaaacttacgac |
47745669 |
T |
|
| Q |
204 |
gagaatcacttgatgcagctatttcttttagtttc |
238 |
Q |
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| T |
47745670 |
gagaatcacctgatgcagctatttcattgagtttc |
47745704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 47717690 - 47717915
Alignment:
| Q |
4 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaatcattg |
103 |
Q |
| |
|
||||| ||||||||| ||||||||||||| |||| ||| |||| |||||||| | | ||||| ||||||||||| |||||| |||||||||||||||| |
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| T |
47717690 |
ttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctgaaatagcacgctctaaacaatcattg |
47717789 |
T |
|
| Q |
104 |
caatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaacttaagac |
203 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| | | |||||||||| ||| |
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| T |
47717790 |
caatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaa---------agttgcattagcggtagcaaacttacgac |
47717880 |
T |
|
| Q |
204 |
gagaatcacttgatgcagctatttcttttagtttc |
238 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||| |
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| T |
47717881 |
gagaatcacttgatgctgctatttctttgagtttc |
47717915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 47704889 - 47704941
Alignment:
| Q |
4 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttat |
56 |
Q |
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||||||||||||||| ||||||||||||| |||||| | |||||||||||||| |
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| T |
47704889 |
ttcatatctaatattgcaacttggtttgataactcttccaccaatcttgttat |
47704941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 47811779 - 47811738
Alignment:
| Q |
116 |
gacaaatcaggtgtacactgcacaagaccatatatggtttga |
157 |
Q |
| |
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|||||||||||||||||||| |||||||||| ||| |||||| |
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| T |
47811779 |
gacaaatcaggtgtacactgaacaagaccatttattgtttga |
47811738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 6522027 - 6521987
Alignment:
| Q |
116 |
gacaaatcaggtgtacactgcacaagaccatatatggtttg |
156 |
Q |
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|||||||||||||| || || |||||||||||||||||||| |
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| T |
6522027 |
gacaaatcaggtgtgcattgaacaagaccatatatggtttg |
6521987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 28830931 - 28830976
Alignment:
| Q |
4 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatc |
49 |
Q |
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| T |
28830931 |
ttcatatctaatattacaacttggtttcataactctagcaccaatc |
28830976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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