View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6616_high_1 (Length: 600)

Name: NF6616_high_1
Description: NF6616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6616_high_1
NF6616_high_1
[»] chr1 (13 HSPs)
chr1 (19-591)||(4570624-4571201)
chr1 (48-591)||(4014787-4015343)
chr1 (61-431)||(21855218-21855592)
chr1 (224-436)||(10218835-10219054)
chr1 (207-432)||(4016756-4016981)
chr1 (48-157)||(4016621-4016730)
chr1 (224-435)||(4366496-4366708)
chr1 (213-344)||(39379051-39379182)
chr1 (213-344)||(17560763-17560894)
chr1 (48-172)||(10219106-10219239)
chr1 (222-298)||(50645484-50645560)
chr1 (525-584)||(4017083-4017139)
chr1 (239-288)||(15961233-15961282)
[»] chr5 (5 HSPs)
chr5 (61-431)||(24330734-24331108)
chr5 (223-287)||(18964830-18964894)
chr5 (225-301)||(29597554-29597630)
chr5 (225-299)||(29647670-29647744)
chr5 (225-299)||(29642353-29642427)
[»] chr7 (48 HSPs)
chr7 (223-435)||(29921993-29922200)
chr7 (224-344)||(29867188-29867305)
chr7 (223-435)||(29859311-29859524)
chr7 (224-435)||(29106665-29106883)
chr7 (223-324)||(29874480-29874581)
chr7 (224-344)||(29881205-29881325)
chr7 (223-344)||(29454103-29454224)
chr7 (225-435)||(29899225-29899442)
chr7 (270-435)||(29885105-29885271)
chr7 (230-341)||(29445663-29445774)
chr7 (223-293)||(14076678-14076748)
chr7 (223-293)||(14386706-14386776)
chr7 (222-293)||(1985954-1986025)
chr7 (223-292)||(660847-660916)
chr7 (223-336)||(29431001-29431111)
chr7 (225-293)||(19344577-19344645)
chr7 (223-299)||(20352089-20352165)
chr7 (223-299)||(22100487-22100563)
chr7 (224-287)||(19604464-19604527)
chr7 (223-340)||(29476340-29476457)
chr7 (247-344)||(29920067-29920164)
chr7 (223-299)||(22063636-22063712)
chr7 (241-299)||(20338918-20338976)
chr7 (213-299)||(20374493-20374579)
chr7 (222-287)||(18514786-18514851)
chr7 (522-555)||(29880951-29880984)
chr7 (223-291)||(6864807-6864875)
chr7 (225-293)||(22028628-22028696)
chr7 (222-298)||(22070106-22070182)
chr7 (243-299)||(22080862-22080918)
chr7 (391-435)||(29881113-29881157)
chr7 (234-341)||(29895418-29895528)
chr7 (223-298)||(19637217-19637292)
chr7 (223-298)||(24010378-24010453)
chr7 (223-285)||(13416911-13416973)
chr7 (223-293)||(20058057-20058127)
chr7 (534-580)||(24021453-24021499)
chr7 (241-299)||(36263047-36263105)
chr7 (246-299)||(9807818-9807871)
chr7 (225-298)||(12819918-12819991)
chr7 (521-550)||(22021074-22021103)
chr7 (390-435)||(29867096-29867141)
chr7 (241-298)||(36255361-36255418)
chr7 (225-293)||(19722018-19722086)
chr7 (522-550)||(22036792-22036820)
chr7 (224-300)||(23993528-23993604)
chr7 (223-291)||(26003031-26003099)
chr7 (227-299)||(36260247-36260319)
[»] chr3 (4 HSPs)
chr3 (223-344)||(3625683-3625804)
chr3 (223-293)||(25901279-25901349)
chr3 (223-293)||(25915297-25915367)
chr3 (394-435)||(3625591-3625632)
[»] chr4 (13 HSPs)
chr4 (213-344)||(3557675-3557806)
chr4 (213-344)||(3560948-3561079)
chr4 (213-344)||(3565693-3565824)
chr4 (223-300)||(53774833-53774910)
chr4 (223-299)||(11970982-11971058)
chr4 (224-293)||(53430100-53430169)
chr4 (223-299)||(11981683-11981759)
chr4 (213-344)||(1686275-1686406)
chr4 (227-293)||(837776-837842)
chr4 (515-555)||(3561311-3561351)
chr4 (48-101)||(29945742-29945795)
chr4 (225-298)||(53790548-53790621)
chr4 (391-435)||(1686454-1686498)
[»] chr6 (9 HSPs)
chr6 (222-293)||(6921349-6921420)
chr6 (225-293)||(6954521-6954589)
chr6 (223-291)||(6947880-6947948)
chr6 (223-299)||(20770644-20770720)
chr6 (223-282)||(17369675-17369734)
chr6 (222-289)||(6935217-6935284)
chr6 (222-293)||(6942966-6943037)
chr6 (244-298)||(19746715-19746769)
chr6 (229-293)||(24950150-24950214)
[»] chr2 (13 HSPs)
chr2 (222-290)||(14514903-14514971)
chr2 (227-293)||(20975558-20975624)
chr2 (48-101)||(29571652-29571705)
chr2 (48-101)||(29578441-29578494)
chr2 (48-101)||(29580996-29581049)
chr2 (48-101)||(29610285-29610338)
chr2 (48-101)||(29609724-29609777)
chr2 (223-287)||(554482-554546)
chr2 (225-293)||(18908811-18908879)
chr2 (225-293)||(18913559-18913627)
chr2 (225-293)||(18920767-18920835)
chr2 (238-293)||(25698507-25698562)
chr2 (244-294)||(20967699-20967749)
[»] scaffold0867 (1 HSPs)
scaffold0867 (223-299)||(4669-4745)
[»] scaffold0649 (1 HSPs)
scaffold0649 (223-301)||(5430-5508)
[»] chr8 (2 HSPs)
chr8 (223-299)||(27618485-27618561)
chr8 (223-291)||(29390288-29390356)
[»] scaffold0354 (1 HSPs)
scaffold0354 (227-285)||(7471-7529)


Alignment Details
Target: chr1 (Bit Score: 533; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 19 - 591
Target Start/End: Complemental strand, 4571201 - 4570624
Alignment:
Q  19 atagtcccagtatgtatgatcgctagttccaataatttatgttcgctttgctctattatctctcctattataaagaattgtttgggattctagattgctc 118  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4571201 atagtcccagtatgcatgatcgctagttccaataatttctgttcgctttgctctattatctctcctattataaagaattgtttgggattctagattgctc 4571102  T
Q  119 tgaagtaccaatgaatcaccatcgtcagaaagaaataatagcatcagttgaaaataccttttgtcactgtcacgcaagtcatagtaagctattagaagat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4571101 tgaagtaccaatgaatcaccatcgtcagaaagaaataatagcatcagttgaaaataccttttgtcactgtcacgcaagtcatagtaagctattagaagat 4571002  T
Q  219 cactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4571001 cactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaa 4570902  T
Q  319 acaaaggcagcctcccaac----acaccaatagta-gcaagttcggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgtctc 413  Q
    |||||||||||||||||||    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4570901 acaaaggcagcctcccaacacacacaccaatagtaggctagttcggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgtctc 4570802  T
Q  414 caaatcaagagaaacaataacagcttgttccacattagtactgctgtgaatagtaaccaaccagttcacagtgccactcaaatacacaggtttgtggcca 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4570801 caaatcaagagaaacaataacagcttgttccacattagtactgctgtgaatagtaaccaaccagttcacagtgccactcaaatacacaggtttgtggcca 4570702  T
Q  514 agaacagtaggaaaactttcaatatttctccaaacatcatcatcacccaaattgagaactctgacctctgatgatgtc 591  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  4570701 agaacagtaggaaaactttcaatatttctccaaacatcatcaccacccaaattgagaactctgacctctgatgctgtc 4570624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 48 - 591
Target Start/End: Original strand, 4014787 - 4015343
Alignment:
Q  48 caataatttatgttcgctttgctctattatctctcctattataaag---aattgtttgggattctagattgctctgaagtaccaatgaatcaccatcgtc 144  Q
    ||||||||| |||||||||||||||||||| |||||| | ||| ||   |||||||||||||||||||||||||||||||| || |||||||||||| ||    
T  4014787 caataatttctgttcgctttgctctattatgtctcctgtcatagaggagaattgtttgggattctagattgctctgaagtatcagtgaatcaccatcctc 4014886  T
Q  145 agaaagaaataatagcatcagttgaaaataccttttgtcactgtcacgcaagtcatagtaagctattagaagatcactataactaattttaagcaattga 244  Q
     |||||||||||| ||| ||  |||||||| | | ||||| ||||||  ||||     ||| ||||||||||||||   ||||||| |||||| ||||||    
T  4014887 ggaaagaaataatggcaccaactgaaaataacatatgtcattgtcactaaagttgccataatctattagaagatcatggtaactaactttaaggaattga 4014986  T
Q  245 gtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatca------gtttccctgtgtgaataagaaaaacaaaggcagcctcccaaca 338  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||      |||||||||||  ||||||||||||||||||||||||||| ||    
T  4014987 gtccaagaatcttcaaccccaaatttcttcatctgccatataacaatatcaaaatgagtttccctgtgcaaataagaaaaacaaaggcagcctcccagca 4015086  T
Q  339 caccaatagtag-caagttcggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgtctccaaatcaagagaaacaataacagc 437  Q
    |||||||||| | | |||  ||| ||||||||||||| |||||||| ||  ||||||| ||||| | ||| |||||||||||||| |||||||||||||     
T  4015087 caccaatagttggcgagtcaggcagcacttcatcaacgccacgaggaactgtgtattgcttgtacgcctctgtctccaaatcaagtgaaacaataacaga 4015186  T
Q  438 ttgttccacattagtactgctgtgaata------gtaaccaaccagttcacagtgccactcaaatacacaggtttgtggccaagaacagtaggaaaactt 531  Q
     ||||||||| ||  |||| ||||||||      ||| |||||||||| | ||| ||||||||| ||||| ||| |||| ||||||||  ||||||||||    
T  4015187 gtgttccacagtatcactggtgtgaatagtaggcgtagccaaccagtttatagtaccactcaaacacacatgttcgtggtcaagaacaacaggaaaactt 4015286  T
Q  532 tcaatatttctccaaacatcatcatcacccaaattgagaactctgacctctgatgatgtc 591  Q
    ||||| ||||||||||   ||||| ||||||| ||||||||| | || ||||||| ||||    
T  4015287 tcaatgtttctccaaa---catcaacacccaagttgagaactttcacatctgatgttgtc 4015343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 61 - 431
Target Start/End: Original strand, 21855218 - 21855592
Alignment:
Q  61 tcgctttgctctattatctctcctattataaagaatt---gtttgggattctagattgctctgaagtaccaatgaatcaccatcgtcagaaagaaataat 157  Q
    ||||| ||||||||||||||| |||||||| ||||||   ||||| |||||| ||||||||| |||||  |  | ||||||||| |||||||||||||||    
T  21855218 tcgctctgctctattatctcttctattatagagaattattgtttgtgattcttgattgctctcaagtattagggtatcaccatcttcagaaagaaataat 21855317  T
Q  158 agcatcagttg-aaaataccttttgtc--actgtcacgcaagtcatagtaagctattagaagatcactataactaattttaagcaattgagtccaagaat 254  Q
     |||||| ||| |||| |  |||| ||  |  |||||  |||||||| |   |||||||||||| |   ||||||| |||||| | ||||||||||||||    
T  21855318 ggcatcaattggaaaacaaattttatcctagggtcactaaagtcataat---ctattagaagattatggtaactaactttaaggagttgagtccaagaat 21855414  T
Q  255 cttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaaaggcagcctcccaacacaccaatag-tagcaa 353  Q
    ||||||||||||||| |||||| | ||||||||||||||| |||||| |||  ||||| ||||||||||| ||||| | ||| |||||||||| | ||      
T  21855415 cttcaaccccaaattccttcatctcccatataacaaaatcggtttccttgtacgaatatgaaaaacaaagacagcccctcaatacaccaatagttggctc 21855514  T
Q  354 gttcggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgtctccaaatcaagagaaacaat 431  Q
     |||||||| ||||||||||  ||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  21855515 tttcggcggaacttcatcaaaaccatgaggcataatgtattgattgtatgtctccgtctccaaatcaagagaaacaat 21855592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 224 - 436
Target Start/End: Complemental strand, 10219054 - 10218835
Alignment:
Q  224 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaaa 323  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||  || ||||||||||||    
T  10219054 taactaattttaagtaattgagtccaagaatcttcaatcccaaatttcttcatttgccatacaacaaaatcagtttccttgtgcaaaaaagaaaaacaaa 10218955  T
Q  324 ggcagcctcccaacacaccaatagtag----caagttcg---gcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgtctccaa 416  Q
    |||| || ||||||||||||||||| |       || ||   ||| ||||| |||||  ||||  |||||||||||||||||||||||||||||||||||    
T  10218954 ggcaaccccccaacacaccaatagttggtgtgttgtacgaatgcgtcacttgatcaaaaccacagggcaccatgtattgattgtatgtctccgtctccaa 10218855  T
Q  417 atcaagagaaacaataacag 436  Q
    ||||||||||||||||||||    
T  10218854 atcaagagaaacaataacag 10218835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 207 - 432
Target Start/End: Original strand, 4016756 - 4016981
Alignment:
Q  207 ctattagaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtg 306  Q
    ||||||||||||||   ||||||| ||||| ||| |||||||| ||||||||||| |||||||||||||| ||||| |||   ||||  |||| ||| |     
T  4016756 ctattagaagatcatggtaactaaatttaaacaactgagtccaggaatcttcaactccaaatttcttcatctgccagatacagaaattggtttgcctata 4016855  T
Q  307 tgaataagaaaaacaaaggcagcctcccaacacaccaatag-tagcaagttcggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtc 405  Q
     ||||||||||||||||||||||| |||||||||| ||||| | ||| ||   ||||| ||| |||||  ||||||||||||||||||||||||||||||    
T  4016856 ggaataagaaaaacaaaggcagccccccaacacactaatagttggcatgtaaagcggccctttatcaaaaccacgaggcaccatgtattgattgtatgtc 4016955  T
Q  406 tccgtctccaaatcaagagaaacaata 432  Q
    |||||| ||||||||||||||||||||    
T  4016956 tccgtc-ccaaatcaagagaaacaata 4016981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 48 - 157
Target Start/End: Original strand, 4016621 - 4016730
Alignment:
Q  48 caataatttatgttcgctttgctctattatctctcctattataaagaattgtttgggattctagattgctctgaagtaccaatgaatcaccatcgtcaga 147  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| || |||||||||||| |||||    
T  4016621 caataatttctgttcgctttgctctattatctctcctattatagagaattgtttgggattctagactgctctgaagtatcagtgaatcaccatcctcaga 4016720  T
Q  148 aagaaataat 157  Q
    ||||||||||    
T  4016721 aagaaataat 4016730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 224 - 435
Target Start/End: Original strand, 4366496 - 4366708
Alignment:
Q  224 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaaa 323  Q
    ||||||| |||||| ||| |||||||||| ||||||||||| ||||||||||| ||||||| |||||||||||||| | |||  ||||||||||||||||    
T  4366496 taactaactttaagaaatggagtccaagactcttcaaccccgaatttcttcatctgccataaaacaaaatcagttttcttgtaagaataagaaaaacaaa 4366595  T
Q  324 ggcagcctcccaacacaccaatagtagcaagttc----ggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgtctccaaatc 419  Q
    ||||| | |||||||||||||  || |   ||||    || |||||||| ||||  |||||||||| || |||||||||||||||||| ||  ||| |||    
T  4366596 ggcagtcccccaacacaccaactgttg---gttcagtaggtggcacttcttcaaaaccacgaggcagcaagtattgattgtatgtctctgtacccagatc 4366692  T
Q  420 aagagaaacaataaca 435  Q
    ||| ||||||||||||    
T  4366693 aagcgaaacaataaca 4366708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 213 - 344
Target Start/End: Original strand, 39379051 - 39379182
Alignment:
Q  213 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaata 312  Q
    ||||||||  |||||| |||||||| |||||||||||||| |||||||||||||||| |||||| |||||||||| |||||||||||  ||||   ||||    
T  39379051 gaagatcatgataactgattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcagtttttctgtaacaata 39379150  T
Q  313 agaaaaacaaaggcagcctcccaacacaccaa 344  Q
    |||||||||||| ||| | |||||||||||||    
T  39379151 agaaaaacaaagacagtcacccaacacaccaa 39379182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 213 - 344
Target Start/End: Original strand, 17560763 - 17560894
Alignment:
Q  213 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaata 312  Q
    |||||||  ||||||||||| |||| ||| | |||||||||||||||||||||||||||||||| ||||||||||| |||||  ||||| |||   ||||    
T  17560763 gaagatcgttataactaattataaggaatggtgtccaagaatcttcaaccccaaatttcttcatgtgccatataaccaaatcgatttccttgtaacaata 17560862  T
Q  313 agaaaaacaaaggcagcctcccaacacaccaa 344  Q
    |||||||||||| ||| | |||||||||||||    
T  17560863 agaaaaacaaagacagtcccccaacacaccaa 17560894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 10219239 - 10219106
Alignment:
Q  48 caataatttatgttcgctttgctctattatctctcctattataaagaattgttt---------gggattctagattgctctgaagtaccaatgaatcacc 138  Q
    ||||||||| |||| |||||||| ||||||||||| | ||||| ||||||||||         |||||||||||||||||| ||||| ||  ||||||||    
T  10219239 caataatttgtgtttgctttgctgtattatctctcatgttatagagaattgtttgaactgttagggattctagattgctctcaagtatcatggaatcacc 10219140  T
Q  139 atcgtcagaaagaaataatagcatcagttgaaaa 172  Q
    ||| |||||||||| | || ||| || |||||||    
T  10219139 atcctcagaaagaagtgatggcaccaattgaaaa 10219106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 50645484 - 50645560
Alignment:
Q  222 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtt 298  Q
    |||||||||||||||  |||||| ||||||| |||| ||| ||||| | |||||||||||| |||||||||| ||||    
T  50645484 tataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatttgccacataacaaaatgagtt 50645560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 525 - 584
Target Start/End: Original strand, 4017083 - 4017139
Alignment:
Q  525 aaaactttcaatatttctccaaacatcatcatcacccaaattgagaactctgacctctga 584  Q
    |||||| ||||||||||||||||   ||||||||||||||||||||||| | ||||||||    
T  4017083 aaaactgtcaatatttctccaaa---catcatcacccaaattgagaactttcacctctga 4017139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 15961282 - 15961233
Alignment:
Q  239 aattgagtccaagaatcttcaaccccaaatttcttcatttgccatataac 288  Q
    |||||||||||||| |||||| | |||||||||||||||| |||||||||    
T  15961282 aattgagtccaagattcttcagctccaaatttcttcattttccatataac 15961233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 4e-58; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 61 - 431
Target Start/End: Original strand, 24330734 - 24331108
Alignment:
Q  61 tcgctttgctctattatctctcctattataaagaatt---gtttgggattctagattgctctgaagtaccaatgaatcaccatcgtcagaaagaaataat 157  Q
    ||||| ||||||||||||||| |||||||| ||||||   ||||| |||||| ||||||||| |||||  |  | ||||||||| |||||||||||||||    
T  24330734 tcgctctgctctattatctcttctattatagagaattattgtttgtgattcttgattgctctcaagtattagggtatcaccatcttcagaaagaaataat 24330833  T
Q  158 agcatcagttg-aaaataccttttgtc--actgtcacgcaagtcatagtaagctattagaagatcactataactaattttaagcaattgagtccaagaat 254  Q
     |||||| ||| |||| |  |||| ||  |  |||||  |||||||| |   |||||||||||| |   ||||||| |||||| | ||||||||||||||    
T  24330834 ggcatcaattggaaaacaaattttatcctagggtcactaaagtcataat---ctattagaagattatggtaactaactttaaggagttgagtccaagaat 24330930  T
Q  255 cttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaaaggcagcctcccaacacaccaatag-tagcaa 353  Q
    ||||||||||||||| |||||| | ||||||||||||||| |||||| |||  ||||| ||||||||||| ||||| | ||| |||||||||| | ||      
T  24330931 cttcaaccccaaattccttcatctcccatataacaaaatcggtttccttgtacgaatatgaaaaacaaagacagcccctcaatacaccaatagttggctc 24331030  T
Q  354 gttcggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgtctccaaatcaagagaaacaat 431  Q
     |||||||| ||||||||||  ||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  24331031 tttcggcggaacttcatcaaaaccatgaggcataatgtattgattgtatgtctccgtctccaaatcaagagaaacaat 24331108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 18964830 - 18964894
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataa 287  Q
    ||||| ||||||||| |||||||||||||| |||||||| ||||||| |||||||||||||||||    
T  18964830 ataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 18964894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 225 - 301
Target Start/End: Original strand, 29597554 - 29597630
Alignment:
Q  225 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttcc 301  Q
    ||||||||||||| |||||||||||||| | |||||| |||||||   ||||||||||||||||||||| |||||||    
T  29597554 aactaattttaaggaattgagtccaagattgttcaactccaaattcaatcatttgccatataacaaaatgagtttcc 29597630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 225 - 299
Target Start/End: Complemental strand, 29647744 - 29647670
Alignment:
Q  225 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 299  Q
    ||||||||||||| |||||||||||||| | |||||  |||||||   ||||||||||||||||||||| |||||    
T  29647744 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacaaaatgagttt 29647670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 299
Target Start/End: Complemental strand, 29642427 - 29642353
Alignment:
Q  225 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 299  Q
    ||||||||||||| |||||||||||||| | |||||  |||||||   |||||||||||||||| |||| |||||    
T  29642427 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttt 29642353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 48)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 223 - 435
Target Start/End: Original strand, 29921993 - 29922200
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaa 322  Q
    |||||||||| |||| ||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||  |||  | |||||||||||||    
T  29921993 ataactaattctaaggaattgagaccaagaatcttcatccccaaatttcttcatctgccatataacaaaatcagtttctttgtaagcataagaaaaacaa 29922092  T
Q  323 aggcagcctcccaacacaccaatagtagcaagttcggc----ggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgtctccaaat 418  Q
    |||||||| |||||||||||||  || |   |||| ||    |||||||||||||      |||||| ||  ||||||||||||||||||||| | ||||    
T  29922093 aggcagccccccaacacaccaacggttg---gttctgcagatggcacttcatcaa------gaggcaacagatattgattgtatgtctccgtccctaaat 29922183  T
Q  419 caagagaaacaataaca 435  Q
    |||||||||| ||||||    
T  29922184 caagagaaacgataaca 29922200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 224 - 344
Target Start/End: Complemental strand, 29867305 - 29867188
Alignment:
Q  224 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaaa 323  Q
    ||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||   |  ||||||||||||||||    
T  29867305 taactaattctaaggaattgagtccaagaatcttcaaccccgaatttcttcatttgccatataataaaatcagtttcc---ttagaataagaaaaacaaa 29867209  T
Q  324 ggcagcctcccaacacaccaa 344  Q
    ||||| | |||||||||||||    
T  29867208 ggcagtcccccaacacaccaa 29867188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 223 - 435
Target Start/End: Complemental strand, 29859524 - 29859311
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaa 322  Q
    ||||||||||||||| ||| | ||||||||||||||||| |||||||||||||| | ||||||||| |||||| ||||| |||   ||||||||||||||    
T  29859524 ataactaattttaagaaatggggtccaagaatcttcaactccaaatttcttcatctcccatataacgaaatcaatttccttgtaacaataagaaaaacaa 29859425  T
Q  323 aggcagcctcccaacacaccaatagtagcaagttc-ggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgtctccaaatcaa 421  Q
    ||   | | ||||||||||||||||| |  |   | |||||||| ||||||| |||||||||||  | ||||||||||||||| ||  || |||||||||    
T  29859424 agatggtcccccaacacaccaatagttggtatcacaggcggcacctcatcaaacccacgaggcaataagtattgattgtatgtttcactccccaaatcaa 29859325  T
Q  422 gagaaacaataaca 435  Q
    | ||||||||||||    
T  29859324 gtgaaacaataaca 29859311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 224 - 435
Target Start/End: Complemental strand, 29106883 - 29106665
Alignment:
Q  224 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatca------gtttccctgtgtgaataagaaa 317  Q
    |||||||||||||  | |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||      ||||    || | |||||||||    
T  29106883 taactaattttaaaaagttgagtccaagactcttcaaccccaaatttcttcatctgccatacaacaaaatcaaaatctgtttttacgtataaataagaaa 29106784  T
Q  318 aacaaaggcagcctcccaacacaccaa-tagtagcaagttcggcggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgtctccaa 416  Q
    ||||||||||||| ||||||||||||| |  | ||   || | |||||||||||||| ||||||||||| | |||||||||||||||||||| ||  | |    
T  29106783 aacaaaggcagccccccaacacaccaactgttggccgttttgacggcacttcatcaaacccacgaggcaacttgtattgattgtatgtctccatcctcca 29106684  T
Q  417 atcaagagaaacaataaca 435  Q
    |||||| ||||||||||||    
T  29106683 atcaagtgaaacaataaca 29106665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 223 - 324
Target Start/End: Complemental strand, 29874581 - 29874480
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaa 322  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||   ||||||||||||||    
T  29874581 ataactaattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatttgccatataatgaaatcagtttccttgtaacaataagaaaaacaa 29874482  T
Q  323 ag 324  Q
    ||    
T  29874481 ag 29874480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 224 - 344
Target Start/End: Complemental strand, 29881325 - 29881205
Alignment:
Q  224 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaaa 323  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |||   ||||| |||| ||||    
T  29881325 taactaattctaaggaattgagtccaagaatcttcaaccccaaatttcttcatttgccaaacaataaaatcagtttccttgtaacaataacaaaagcaaa 29881226  T
Q  324 ggcagcctcccaacacaccaa 344  Q
    ||||| |  ||||||||||||    
T  29881225 ggcagtcctccaacacaccaa 29881205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 223 - 344
Target Start/End: Original strand, 29454103 - 29454224
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaa 322  Q
    ||||||||||||||  ||||||||||||||||||||||| ||||||||| ||||  |||||||||||||||| | |||| |||  |||||||||||||||    
T  29454103 ataactaattttaaagaattgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaaatcgggttccttgtaagaataagaaaaacaa 29454202  T
Q  323 aggcagcctcccaacacaccaa 344  Q
    ||||  || ||||| |||||||    
T  29454203 aggcttccccccaaaacaccaa 29454224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 225 - 435
Target Start/End: Complemental strand, 29899442 - 29899225
Alignment:
Q  225 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatca------gtttccctgtgtgaataagaaaa 318  Q
    |||||||||| |  ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||      || |   |||   || |||||||    
T  29899442 aactaatttttaaaaattgagtccaggactcttcaaccccaaatttcttcatctgccatataacaaaatcaaaattggtattattgtaaaaacaagaaaa 29899343  T
Q  319 acaaaggcagcctcccaacacaccaatagtagcaagttcgg-cggcacttcatcaaccccacgaggcaccatgtattgattgtatgtctccgtctccaaa 417  Q
    |||||||||||| |||||||||||||  || |      | | |||||||||||||| |||| |||||| |||||| || || ||||||||||||||||||    
T  29899342 acaaaggcagccccccaacacaccaaatgttggctccacagacggcacttcatcaaacccaggaggcaacatgtactgcttctatgtctccgtctccaaa 29899243  T
Q  418 tcaagagaaacaataaca 435  Q
    ||||| ||||||||||||    
T  29899242 tcaagtgaaacaataaca 29899225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 270 - 435
Target Start/End: Complemental strand, 29885271 - 29885105
Alignment:
Q  270 tcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaaaggcagcctcccaacacaccaatagtagcaagttcgg-cggcacttc 368  Q
    ||||||| |||||||||||||||||||||||| ||    |||||||||||||||||||||| || | ||||||||  || |      | | |||||||||    
T  29885271 tcttcatctgccatataacaaaatcagtttccttggaaaaataagaaaaacaaaggcagccccctagcacaccaaatgttggctccacagacggcacttc 29885172  T
Q  369 atcaaccccacgaggcaccatgtattgattgtatgtctccgtctccaaatcaagagaaacaataaca 435  Q
    ||||| |||| |||||| |||||| || || ||||||||||||||||||||||| ||||||||||||    
T  29885171 atcaaacccaggaggcaacatgtactgcttctatgtctccgtctccaaatcaagtgaaacaataaca 29885105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 230 - 341
Target Start/End: Original strand, 29445663 - 29445774
Alignment:
Q  230 attttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaaaggcagc 329  Q
    ||||| || |||||||||||||| ||||||||||| |||| |||||| |||||||||| |||||| |||||| |||   |||||||| |||||||| |||    
T  29445663 atttttagaaattgagtccaagagtcttcaacccctaattccttcatctgccatataagaaaatcggtttccttgtaaaaataagaacaacaaaggaagc 29445762  T
Q  330 ctcccaacacac 341  Q
    | ||||||||||    
T  29445763 cccccaacacac 29445774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 223 - 293
Target Start/End: Complemental strand, 14076748 - 14076678
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 293  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||||||||| ||||    
T  14076748 ataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaat 14076678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 223 - 293
Target Start/End: Complemental strand, 14386776 - 14386706
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 293  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||||||||| ||||    
T  14386776 ataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaat 14386706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 1985954 - 1986025
Alignment:
Q  222 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 293  Q
    ||||||||||||||| ||||||||||||||| |||||||| ||||||| |||||||||||| | ||||||||    
T  1985954 tataactaattttaaacaattgagtccaagattcttcaacgccaaattccttcatttgccaaagaacaaaat 1986025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 660847 - 660916
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaa 292  Q
    ||||||||||||||| |||||||||||||| |||||||| | ||||| |||||| |||||||||||||||    
T  660847 ataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataacaaaa 660916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 223 - 336
Target Start/End: Original strand, 29431001 - 29431111
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaa 322  Q
    ||||||||||||||| ||||| ||||||||||||| | ||||||||||| ||||  |||||||||||||||  || |||   |  |||||||||||||||    
T  29431001 ataactaattttaaggaattgggtccaagaatctttagccccaaatttcatcatccgccatataacaaaataggtgtcc---ttagaataagaaaaacaa 29431097  T
Q  323 aggcagcctcccaa 336  Q
    ||||| || |||||    
T  29431098 aggcatccccccaa 29431111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 19344577 - 19344645
Alignment:
Q  225 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 293  Q
    ||||||||||||| |||||||||||||| | |||||| ||||||| | |||| ||||||||||||||||    
T  19344577 aactaattttaagaaattgagtccaagattgttcaactccaaattccatcatctgccatataacaaaat 19344645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 20352165 - 20352089
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 299  Q
    ||||||||||||||  | ||||||||| ||||||||||| ||||||| |||||||| |||||| ||||||| |||||    
T  20352165 ataactaattttaaaaagttgagtccatgaatcttcaactccaaattccttcatttcccatattacaaaatgagttt 20352089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 22100563 - 22100487
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 299  Q
    |||||||||||| |  || ||||||||||| |||| ||| ||||||||||||||||||||||||| ||||| |||||    
T  22100563 ataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagttt 22100487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 19604464 - 19604527
Alignment:
Q  224 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataa 287  Q
    |||||||||||||| ||||||||||| || |||||||| ||||||| |||||| ||||||||||    
T  19604464 taactaattttaaggaattgagtccaggagtcttcaactccaaattccttcatctgccatataa 19604527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 223 - 340
Target Start/End: Original strand, 29476340 - 29476457
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaa 322  Q
    |||||| |||||||| |||||||||||||| |  |||  ||| |||| |||||| |||||||||| |||||| |||||| |||   |||| ||| |||||    
T  29476340 ataacttattttaagaaattgagtccaagagttgtcattccctaattccttcatctgccatataagaaaatcggtttccttgtaaaaataggaacaacaa 29476439  T
Q  323 aggcagcctcccaacaca 340  Q
    ||| |||| |||||||||    
T  29476440 aggaagccccccaacaca 29476457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 247 - 344
Target Start/End: Original strand, 29920067 - 29920164
Alignment:
Q  247 ccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaaaggcagcctcccaacacaccaa 344  Q
    |||||||| |||||  || ||||||||||| | |||||| | ||| || |||||| |||  ||||||||| || ||||||||||||||||||||||||    
T  29920067 ccaagaatattcaagtccgaatttcttcatcttccatattataaattcggtttccttgtaagaataagaagaaaaaaggcagcctcccaacacaccaa 29920164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 22063712 - 22063636
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 299  Q
    |||||||||||| |  || ||||||||||| |||| ||  ||||||| ||||||||||||||||||||||| |||||    
T  22063712 ataactaattttgaataactgagtccaagactcttgaaatccaaattccttcatttgccatataacaaaatgagttt 22063636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 20338976 - 20338918
Alignment:
Q  241 ttgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 299  Q
    ||||||||||||||||||||| || |||| |||||||| |||||| ||||||| |||||    
T  20338976 ttgagtccaagaatcttcaactcctaattccttcattttccatattacaaaatgagttt 20338918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 299
Target Start/End: Original strand, 20374493 - 20374579
Alignment:
Q  213 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 299  Q
    |||||| | |||||||||||||||  | |||| |||| |||||| |||| ||||||| |||||||| |||||| ||||||| |||||    
T  20374493 gaagattattataactaattttaaaaagttgaatccatgaatctccaactccaaattccttcatttcccatattacaaaatgagttt 20374579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 18514786 - 18514851
Alignment:
Q  222 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataa 287  Q
    |||||||||||||||| |||||||||||||| | |||||| |||||||  | ||||| ||||||||    
T  18514786 tataactaattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataa 18514851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 522 - 555
Target Start/End: Complemental strand, 29880984 - 29880951
Alignment:
Q  522 aggaaaactttcaatatttctccaaacatcatca 555  Q
    ||||||||||||||||||||||||||||||||||    
T  29880984 aggaaaactttcaatatttctccaaacatcatca 29880951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 6864807 - 6864875
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaa 291  Q
    ||||||| ||||||| || ||||||||||| |||||||| ||||||| |||||||  |||||| |||||    
T  6864807 ataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattacaaa 6864875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 22028696 - 22028628
Alignment:
Q  225 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 293  Q
    ||||||| ||||| |||||||||||||| |||||||| ||| | | | |||||| ||||||||||||||    
T  22028696 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaat 22028628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 298
Target Start/End: Complemental strand, 22070182 - 22070106
Alignment:
Q  222 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtt 298  Q
    ||||||||||||| |  ||  |||||||||| |||| ||| ||||||| ||||||||||||||||| ||||| ||||    
T  22070182 tataactaattttgaataaccgagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagtt 22070106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 22080918 - 22080862
Alignment:
Q  243 gagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 299  Q
    |||||||||| |||| ||| ||||||| ||||||||||||||||| ||||| |||||    
T  22080918 gagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagttt 22080862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 435
Target Start/End: Complemental strand, 29881157 - 29881113
Alignment:
Q  391 tattgattgtatgtctccgtctccaaatcaagagaaacaataaca 435  Q
    ||||||||||||||||| ||| |||||||||| ||||||||||||    
T  29881157 tattgattgtatgtctcagtccccaaatcaagtgaaacaataaca 29881113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 341
Target Start/End: Complemental strand, 29895528 - 29895418
Alignment:
Q  234 taagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgt---gtgaataagaaaaacaaaggcagcc 330  Q
    |||| |||||| ||||||| ||||| | ||||||||||||||| ||||||| |||||| ||  ||||| |||     ||||||||||||||||| |||||    
T  29895528 taagtaattgactccaagactcttctatcccaaatttcttcatctgccataaaacaaattcgttttccttgtcagaagaataagaaaaacaaagacagcc 29895429  T
Q  331 tcccaacacac 341  Q
     ||||| ||||    
T  29895428 acccaagacac 29895418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 19637217 - 19637292
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtt 298  Q
    ||||||||||||||| |   || |||| || |||| ||| ||||||| ||||||||||||||||| ||||||||||    
T  19637217 ataactaattttaaggagccgaatccacgactcttgaactccaaattccttcatttgccatataataaaatcagtt 19637292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 24010453 - 24010378
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtt 298  Q
    ||||||||| ||||| |||||||||||||| |||| ||||||  | | |||||| ||||||| |||||| ||||||    
T  24010453 ataactaatcttaagtaattgagtccaagactcttgaaccccgtactccttcatatgccataaaacaaattcagtt 24010378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 13416911 - 13416973
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatat 285  Q
    ||||||||||||||  |||| |  |||||| |||||||| ||||||| |||||||||||||||    
T  13416911 ataactaattttaacgaattcaacccaagactcttcaactccaaattccttcatttgccatat 13416973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 20058057 - 20058127
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 293  Q
    ||||||||||||||| ||||||  |||||| |||||||| |  |||| || ||||| ||||||||||||||    
T  20058057 ataactaattttaagaaattgacaccaagactcttcaactctgaattcctccattttccatataacaaaat 20058127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 534 - 580
Target Start/End: Complemental strand, 24021499 - 24021453
Alignment:
Q  534 aatatttctccaaacatcatcatcacccaaattgagaactctgacct 580  Q
    |||||||||||||  |||||||||| ||||| |||||||||||||||    
T  24021499 aatatttctccaacaatcatcatcatccaaactgagaactctgacct 24021453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 36263105 - 36263047
Alignment:
Q  241 ttgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 299  Q
    |||||||||||| |||||||| |||||||  | ||| | ||||||||||||||||||||    
T  36263105 ttgagtccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttt 36263047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 9807871 - 9807818
Alignment:
Q  246 tccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 299  Q
    ||||||| |||||||| ||||||| |||||| ||||||||||| ||||| ||||    
T  9807871 tccaagactcttcaactccaaattccttcatctgccatataacgaaatcggttt 9807818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 298
Target Start/End: Original strand, 12819918 - 12819991
Alignment:
Q  225 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtt 298  Q
    |||| |||||||| ||||||||||| || | |||||| ||||||| | |||| ||||||| |||||||| ||||    
T  12819918 aactgattttaaggaattgagtccaggattgttcaactccaaattccgtcatctgccatacaacaaaataagtt 12819991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 550
Target Start/End: Complemental strand, 22021103 - 22021074
Alignment:
Q  521 taggaaaactttcaatatttctccaaacat 550  Q
    ||||||||||||||||||||||||||||||    
T  22021103 taggaaaactttcaatatttctccaaacat 22021074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 435
Target Start/End: Complemental strand, 29867141 - 29867096
Alignment:
Q  390 gtattgattgtatgtctccgtctccaaatcaagagaaacaataaca 435  Q
    ||||||||||||| |||| ||| |||||||||| ||||||||||||    
T  29867141 gtattgattgtatttctcagtccccaaatcaagtgaaacaataaca 29867096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 36255418 - 36255361
Alignment:
Q  241 ttgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtt 298  Q
    |||||||||||| |||||||| |||||||| | ||||| ||||||||| ||| |||||    
T  36255418 ttgagtccaagactcttcaactccaaatttttccattttccatataactaaaccagtt 36255361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 19722086 - 19722018
Alignment:
Q  225 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 293  Q
    |||| ||||| || ||||||||||||||||||| ||| ||||||| | |||| | ||||| ||||||||    
T  19722086 aactgattttgaggaattgagtccaagaatcttgaactccaaattccatcatcttccataaaacaaaat 19722018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 550
Target Start/End: Complemental strand, 22036820 - 22036792
Alignment:
Q  522 aggaaaactttcaatatttctccaaacat 550  Q
    |||||||||||||||||||||||||||||    
T  22036820 aggaaaactttcaatatttctccaaacat 22036792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 23993604 - 23993528
Alignment:
Q  224 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttc 300  Q
    |||||||| ||||  |||||||||||||| |||| ||||||  | | |||||| ||||||| |||||| ||||||||    
T  23993604 taactaatcttaaataattgagtccaagactcttgaaccccgtactccttcatatgccataaaacaaattcagtttc 23993528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 26003031 - 26003099
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaa 291  Q
    |||||||| ||| | ||||||||||||||||  |||||||||| | |  ||||||||||||| ||||||    
T  26003031 ataactaagtttcaacaattgagtccaagaactttcaaccccatactcattcatttgccataaaacaaa 26003099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 36260319 - 36260247
Alignment:
Q  227 ctaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 299  Q
    ||||||||||  | |||| ||||||| |||||||| |||||||  | ||| | ||||||||||||||||||||    
T  36260319 ctaattttaataagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttt 36260247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 223 - 344
Target Start/End: Complemental strand, 3625804 - 3625683
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaataagaaaaacaa 322  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| || ||  ||| || |||  |||||||||||||||    
T  3625804 ataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataataagataggttaccttgtaagaataagaaaaacaa 3625705  T
Q  323 aggcagcctcccaacacaccaa 344  Q
    |||||| | |||||||||||||    
T  3625704 aggcagtcccccaacacaccaa 3625683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 25901279 - 25901349
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 293  Q
    |||||||||||| | ||||||| ||||||| |||| ||| | ||| | |||||||| ||||||||||||||    
T  25901279 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaat 25901349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 25915297 - 25915367
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 293  Q
    |||||||||||| | ||||||| ||||||| |||| ||| | ||| | |||||||| ||||||||||||||    
T  25915297 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaat 25915367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 435
Target Start/End: Complemental strand, 3625632 - 3625591
Alignment:
Q  394 tgattgtatgtctccgtctccaaatcaagagaaacaataaca 435  Q
    |||||||||||||| ||| |||||||||| ||||||||||||    
T  3625632 tgattgtatgtctcagtccccaaatcaagtgaaacaataaca 3625591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 213 - 344
Target Start/End: Complemental strand, 3557806 - 3557675
Alignment:
Q  213 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaata 312  Q
    ||||||||  ||||||||||||||| |||||||||||||| |||||||||||||||| |||||| |||||||||| |||||| |||||| |||  |||||    
T  3557806 gaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatatgccatataataaaatcggtttccttgtaagaata 3557707  T
Q  313 agaaaaacaaaggcagcctcccaacacaccaa 344  Q
    |||||||||||| ||| | | |||||||||||    
T  3557706 agaaaaacaaagacagtccctcaacacaccaa 3557675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 213 - 344
Target Start/End: Original strand, 3560948 - 3561079
Alignment:
Q  213 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaata 312  Q
    ||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||| |||| |||||| |||||| |||  |||||    
T  3560948 gaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattttttcatctgccaaataataaaatcggtttccttgtaagaata 3561047  T
Q  313 agaaaaacaaaggcagcctcccaacacaccaa 344  Q
    |||||||||||||||  | ||||| |||||||    
T  3561048 agaaaaacaaaggcaatcccccaagacaccaa 3561079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 213 - 344
Target Start/End: Complemental strand, 3565824 - 3565693
Alignment:
Q  213 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaata 312  Q
    ||||||||  ||||||||||||||| |||||||||||||| |||||||||||||||| |||||| |||||||||| |||||| |||| | | |   ||||    
T  3565824 gaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggttttcttataacaata 3565725  T
Q  313 agaaaaacaaaggcagcctcccaacacaccaa 344  Q
    |||||||||||||||| | | |||||||||||    
T  3565724 agaaaaacaaaggcagtccctcaacacaccaa 3565693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 223 - 300
Target Start/End: Complemental strand, 53774910 - 53774833
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttc 300  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  53774910 ataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatgagtttc 53774833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 11970982 - 11971058
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 299  Q
    |||||||||| |||| |||||||||||||| ||||| || ||||||| ||||||||||||||||||||||| |||||    
T  11970982 ataactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatataacaaaatgagttt 11971058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 224 - 293
Target Start/End: Original strand, 53430100 - 53430169
Alignment:
Q  224 taactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 293  Q
    |||||||||||||| ||||||||||||||||||||  ||||| |||||||||| |||||||| |||||||    
T  53430100 taactaattttaaggaattgagtccaagaatcttcggccccatatttcttcatctgccatatgacaaaat 53430169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 11981683 - 11981759
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 299  Q
    ||||||||||||||| ||| ||||||| || ||||| || ||||||| ||||||||||||||||||||||| |||||    
T  11981683 ataactaattttaagaaatcgagtccaggactcttccactccaaattccttcatttgccatataacaaaatgagttt 11981759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 344
Target Start/End: Original strand, 1686275 - 1686406
Alignment:
Q  213 gaagatcactataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttccctgtgtgaata 312  Q
    ||||||||  |||||||  |||||| |||||||||||||| || ||||| ||||||| |||||| |||||||||| || ||  ||   | | |  |||||    
T  1686275 gaagatcataataactatatttaagaaattgagtccaagactcgtcaacgccaaattccttcatctgccatataataagattggtcctcttataagaata 1686374  T
Q  313 agaaaaacaaaggcagcctcccaacacaccaa 344  Q
    |||||||||||||||| | |||||||||||||    
T  1686375 agaaaaacaaaggcagtcccccaacacaccaa 1686406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 837842 - 837776
Alignment:
Q  227 ctaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 293  Q
    ||||||||||  |||||| ||||||| |||| ||| ||||| |||||||||||||||||||||||||    
T  837842 ctaattttaaataattgaatccaagactcttgaacaccaaaattcttcatttgccatataacaaaat 837776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 515 - 555
Target Start/End: Original strand, 3561311 - 3561351
Alignment:
Q  515 gaacagtaggaaaactttcaatatttctccaaacatcatca 555  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  3561311 gaacaataggaaaactttcaatatttctccaaacattatca 3561351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 29945795 - 29945742
Alignment:
Q  48 caataatttatgttcgctttgctctattatctctcctattataaagaattgttt 101  Q
    ||||||||||||||||||| | ||| ||||||||||| || || ||||||||||    
T  29945795 caataatttatgttcgcttagttctgttatctctcctgttttagagaattgttt 29945742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 53790621 - 53790548
Alignment:
Q  225 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtt 298  Q
    ||||||||||||| |||||||||||||| | |||||  ||||||||  |||| | |||||||| ||||| ||||    
T  53790621 aactaattttaagaaattgagtccaagattgttcaaatccaaattttgtcatcttccatataataaaatgagtt 53790548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 435
Target Start/End: Original strand, 1686454 - 1686498
Alignment:
Q  391 tattgattgtatgtctccgtctccaaatcaagagaaacaataaca 435  Q
    ||||||||||||||||| ||| |||||| ||| ||||||||||||    
T  1686454 tattgattgtatgtctcagtccccaaattaagtgaaacaataaca 1686498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 6921349 - 6921420
Alignment:
Q  222 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 293  Q
    |||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||| ||||||||||    
T  6921349 tataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaat 6921420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 6954521 - 6954589
Alignment:
Q  225 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 293  Q
    |||||||||||| ||||||||||||||| |||||||| ||||||| |||||||||||| ||||||||||    
T  6954521 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaat 6954589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 6947880 - 6947948
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaa 291  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||| | ||||||    
T  6947880 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccaaagaacaaa 6947948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 20770720 - 20770644
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 299  Q
    ||||||||||||||| |||||| |||| || |||||||  ||||||| ||||||||||||||||||||||| |||||    
T  20770720 ataactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatataacaaaataagttt 20770644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 17369734 - 17369675
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgcca 282  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||||||    
T  17369734 ataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgcca 17369675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 6935217 - 6935284
Alignment:
Q  222 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataaca 289  Q
    |||||||||||||||| |||| ||||||||| |||| ||| ||||||| |||||||||||| ||||||    
T  6935217 tataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataaca 6935284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 6942966 - 6943037
Alignment:
Q  222 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 293  Q
    |||| ||||||||||| ||||| ||| |||| |||||||| ||||||| |||||||||| | ||||||||||    
T  6942966 tatatctaattttaaggaattgcgtctaagattcttcaactccaaattccttcatttgctaaataacaaaat 6943037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 19746715 - 19746769
Alignment:
Q  244 agtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtt 298  Q
    ||||||||| |||| ||| ||||| ||||||||||||||||||||||| ||||||    
T  19746715 agtccaagactcttgaactccaaacttcttcatttgccatataacaaattcagtt 19746769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 24950150 - 24950214
Alignment:
Q  229 aattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 293  Q
    ||||||||| |||||| ||||||| || ||||| ||||| ||| |||| | ||||||||||||||    
T  24950150 aattttaaggaattgactccaagactcctcaactccaaacttcatcatcttccatataacaaaat 24950214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 14514971 - 14514903
Alignment:
Q  222 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaa 290  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||  | ||||| |||||||||||    
T  14514971 tataactaattttaaggaattgagtccaagaatcttcaactccaaattcatccattttccatataacaa 14514903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 20975624 - 20975558
Alignment:
Q  227 ctaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 293  Q
    |||| ||||| ||||||| |||||||||||||||| ||||||| | |||||||||||||||||||||    
T  20975624 ctaaatttaaacaattgaatccaagaatcttcaactccaaattccctcatttgccatataacaaaat 20975558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 29571652 - 29571705
Alignment:
Q  48 caataatttatgttcgctttgctctattatctctcctattataaagaattgttt 101  Q
    ||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||    
T  29571652 caataatttatgttcgcttagttctgttatctctcctattatagagaattgttt 29571705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 29578441 - 29578494
Alignment:
Q  48 caataatttatgttcgctttgctctattatctctcctattataaagaattgttt 101  Q
    ||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||    
T  29578441 caataatttatgttcgcttagttctgttatctctcctattatagagaattgttt 29578494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 29580996 - 29581049
Alignment:
Q  48 caataatttatgttcgctttgctctattatctctcctattataaagaattgttt 101  Q
    ||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||    
T  29580996 caataatttatgttcgcttagttctgttatctctcctattatagagaattgttt 29581049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 29610285 - 29610338
Alignment:
Q  48 caataatttatgttcgctttgctctattatctctcctattataaagaattgttt 101  Q
    ||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||    
T  29610285 caataatttatgttcgcttagatctgttatctctcctattatagagaattgttt 29610338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 29609777 - 29609724
Alignment:
Q  48 caataatttatgttcgctttgctctattatctctcctattataaagaattgttt 101  Q
    ||||||||||||||||||| | ||| ||||||||||||||||  ||||||||||    
T  29609777 caataatttatgttcgcttagttctgttatctctcctattatggagaattgttt 29609724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 554546 - 554482
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataa 287  Q
    ||||||||||||||| |||||||||||||| |||| ||| ||| |||   |||||||||||||||    
T  554546 ataactaattttaagtaattgagtccaagactctttaactccatattctatcatttgccatataa 554482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 18908811 - 18908879
Alignment:
Q  225 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 293  Q
    |||||||||| || |||||||||||||| |||| ||| ||||||| | |||| | ||||||||||||||    
T  18908811 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaat 18908879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 18913559 - 18913627
Alignment:
Q  225 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 293  Q
    |||||||||| || |||||||||||||| |||| ||| ||||||| | |||| | ||||||||||||||    
T  18913559 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaat 18913627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 18920767 - 18920835
Alignment:
Q  225 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 293  Q
    |||||||||| || |||||||||||||| |||| ||| ||||||| | |||| | ||||||||||||||    
T  18920767 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaat 18920835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 25698562 - 25698507
Alignment:
Q  238 caattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 293  Q
    ||||| ||||||||| |||||||| |||||||   |||||||||||||||||||||    
T  25698562 caatttagtccaagagtcttcaactccaaattctctcatttgccatataacaaaat 25698507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 20967749 - 20967699
Alignment:
Q  244 agtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatc 294  Q
    ||||||||| |||||| | | ||||||| ||||||||||||||||||||||    
T  20967749 agtccaagactcttcagctctaaatttcgtcatttgccatataacaaaatc 20967699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 4669 - 4745
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 299  Q
    |||||||||||| |  || ||||||||||| |||| ||| ||||||||||||||||||||||||| ||||| |||||    
T  4669 ataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagttt 4745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0649 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 301
Target Start/End: Complemental strand, 5508 - 5430
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagtttcc 301  Q
    |||||||| |||||| ||   ||||||||| |||||||| | |||||| ||||| |||||||||||||||||| |||||    
T  5508 ataactaaatttaaggaacatagtccaagactcttcaactctaaattttttcatctgccatataacaaaatcattttcc 5430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 27618561 - 27618485
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaatcagttt 299  Q
    |||||||| ||||||||| ||||||||||| |||||||| || | ||  | ||||| |||||||||||||| |||||    
T  27618561 ataactaactttaagcaactgagtccaagactcttcaactccgagttcttccattttccatataacaaaatgagttt 27618485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 29390356 - 29390288
Alignment:
Q  223 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaa 291  Q
    |||||||| || || ||||| ||| ||||| |||||||| ||||||| | |||| ||||||||||||||    
T  29390356 ataactaaattgaaacaatttagttcaagattcttcaactccaaattccctcatctgccatataacaaa 29390288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 7529 - 7471
Alignment:
Q  227 ctaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatat 285  Q
    ||||||||||| ||||||  |||||| || ||||| ||||||| |||||||||||||||    
T  7529 ctaattttaaggaattgaacccaagactcatcaactccaaattccttcatttgccatat 7471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University