View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6616_high_4 (Length: 411)

Name: NF6616_high_4
Description: NF6616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6616_high_4
NF6616_high_4
[»] chr4 (11 HSPs)
chr4 (160-393)||(12707868-12708107)
chr4 (1-90)||(12708171-12708260)
chr4 (1-86)||(11596298-11596383)
chr4 (52-86)||(16303263-16303297)
chr4 (178-240)||(17274621-17274683)
chr4 (1-43)||(12895215-12895257)
chr4 (40-86)||(27706162-27706208)
chr4 (57-86)||(6485613-6485642)
chr4 (53-86)||(30298975-30299008)
chr4 (53-86)||(30327843-30327876)
chr4 (41-86)||(30838238-30838283)
[»] chr7 (9 HSPs)
chr7 (1-86)||(11272531-11272617)
chr7 (282-353)||(19272572-19272643)
chr7 (51-86)||(2334278-2334313)
chr7 (40-86)||(24339670-24339716)
chr7 (54-86)||(9408333-9408365)
chr7 (51-86)||(18039027-18039062)
chr7 (51-86)||(27945069-27945104)
chr7 (54-86)||(21560531-21560563)
chr7 (44-80)||(41414910-41414946)
[»] chr6 (9 HSPs)
chr6 (16-86)||(21395269-21395339)
chr6 (40-86)||(16766725-16766771)
chr6 (40-84)||(9107355-9107399)
chr6 (51-86)||(9911524-9911559)
chr6 (51-86)||(10770670-10770705)
chr6 (178-233)||(21513309-21513364)
chr6 (7-86)||(7930333-7930413)
chr6 (42-86)||(9522919-9522963)
chr6 (50-86)||(18252746-18252782)
[»] chr8 (8 HSPs)
chr8 (40-86)||(2572041-2572087)
chr8 (20-86)||(8343000-8343066)
chr8 (55-86)||(20873097-20873128)
chr8 (52-86)||(15816126-15816160)
chr8 (52-86)||(16867202-16867236)
chr8 (52-86)||(25566869-25566903)
chr8 (54-86)||(8343344-8343376)
chr8 (16-76)||(13436926-13436985)
[»] chr3 (9 HSPs)
chr3 (16-86)||(1509567-1509637)
chr3 (40-84)||(34185108-34185152)
chr3 (21-86)||(14747590-14747655)
chr3 (50-86)||(27505274-27505310)
chr3 (55-86)||(55401103-55401134)
chr3 (40-86)||(14209141-14209187)
chr3 (1-86)||(34910345-34910435)
chr3 (1-34)||(21478777-21478810)
chr3 (53-86)||(28918029-28918062)
[»] chr1 (22 HSPs)
chr1 (40-86)||(6612156-6612202)
chr1 (51-86)||(2218267-2218302)
chr1 (16-86)||(113327-113396)
chr1 (40-86)||(5376485-5376531)
chr1 (40-86)||(47989525-47989571)
chr1 (55-86)||(22515887-22515918)
chr1 (55-86)||(22881616-22881647)
chr1 (51-86)||(24577182-24577217)
chr1 (55-86)||(41877470-41877501)
chr1 (55-86)||(46348383-46348414)
chr1 (1-48)||(46940749-46940796)
chr1 (40-86)||(5944311-5944357)
chr1 (40-86)||(9629885-9629931)
chr1 (40-86)||(15449217-15449263)
chr1 (52-86)||(25272510-25272544)
chr1 (40-86)||(28273073-28273119)
chr1 (40-86)||(31694695-31694741)
chr1 (16-86)||(1704951-1705023)
chr1 (1-34)||(38078602-38078635)
chr1 (51-79)||(17778581-17778609)
chr1 (51-79)||(30173758-30173786)
chr1 (1-49)||(47989578-47989626)
[»] chr5 (8 HSPs)
chr5 (2-86)||(21351852-21351936)
chr5 (40-86)||(19579729-19579775)
chr5 (40-86)||(21542058-21542104)
chr5 (55-86)||(33178053-33178084)
chr5 (40-86)||(21522778-21522824)
chr5 (40-86)||(21533344-21533390)
chr5 (40-86)||(39698569-39698615)
chr5 (40-84)||(37328829-37328873)
[»] chr2 (7 HSPs)
chr2 (53-86)||(20539672-20539705)
chr2 (51-86)||(14996219-14996254)
chr2 (40-86)||(30717515-30717561)
chr2 (41-86)||(15657892-15657937)
chr2 (19-79)||(23058403-23058466)
chr2 (24-86)||(33153452-33153511)
chr2 (40-84)||(37419773-37419817)
[»] scaffold0126 (1 HSPs)
scaffold0126 (23-86)||(19172-19235)
[»] scaffold0236 (1 HSPs)
scaffold0236 (52-86)||(25765-25799)
[»] scaffold0025 (1 HSPs)
scaffold0025 (52-86)||(23798-23832)
[»] scaffold0011 (1 HSPs)
scaffold0011 (56-86)||(17750-17780)
[»] scaffold0053 (1 HSPs)
scaffold0053 (55-83)||(8829-8857)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 160 - 393
Target Start/End: Complemental strand, 12708107 - 12707868
Alignment:
Q  160 cgtattcgtgcttcataggagaatagtaatggatgaattcaataaatgggtacaatgaggggaagttatatttataggtggcgggtttcaga------ga 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||      ||    
T  12708107 cgtattcgtgcttcataggagaatagtaatggatgaattcaataaatgggtacaatgaggggaagttatatttataggtggagggtttcagaacaagaga 12708008  T
Q  254 aagccgatttttagtgaaaaacacaatctgaatcgattcagagaaagtgtgaatcgactaagagactaaaatgggttctgggaatcatttgaagattgaa 353  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12708007 aagccgatttttagtgaaaaacaaaatctgaatcgattcagagaaagtgtgaatcgactaagagactataatgggttctgggaatcatttgaagattgaa 12707908  T
Q  354 ttgattcagatgaatattgaatcaattcgatggccaaact 393  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  12707907 ttgattcagatgaatattgaatcaattcgatgaccaaact 12707868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 12708260 - 12708171
Alignment:
Q  1 tatgaagcacgaatgctcctcggattaggcgtgttccgatgtccgacatagacacgacaccgacacttgtaattacactaaattatttca 90  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  12708260 tatgaagcacggacgctcctcggattaggcgtgttccgatgtccgacatagacacgacatcgacacttgtaattacactgaattatttca 12708171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 11596298 - 11596383
Alignment:
Q  1 tatgaagcacgaatgctcctcggattaggcgtgttccgatgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||| |  |||||| |||||||||||| |||||||| ||||  ||||||||||| ||||||||||||||||| ||||||    
T  11596298 tatgaagcacggacactcctcagattaggcgtgtcccgatgtcggacaatgacacgacacctacacttgtaattacactgaattat 11596383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 16303263 - 16303297
Alignment:
Q  52 acacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||||||||||||||||||||||||||||    
T  16303263 acacgacaccgacacttgtaattacactaaattat 16303297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 17274683 - 17274621
Alignment:
Q  178 gagaatagtaatggatgaattcaataaatgggtacaatgaggggaagttatatttataggtgg 240  Q
    ||||| ||||||| ||||||||| |||||||  | ||||||||||||||||||||||| ||||    
T  17274683 gagaaaagtaatgaatgaattcagtaaatggaaataatgaggggaagttatatttatatgtgg 17274621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 12895215 - 12895257
Alignment:
Q  1 tatgaagcacgaatgctcctcggattaggcgtgttccgatgtc 43  Q
    |||||||||||||  ||||||||||||||||||| ||||||||    
T  12895215 tatgaagcacgaacactcctcggattaggcgtgtcccgatgtc 12895257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 27706162 - 27706208
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||  |||||||||  ||||||||||||||||||||||||    
T  27706162 tgtccgacattaacacgacactcacacttgtaattacactaaattat 27706208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Original strand, 6485613 - 6485642
Alignment:
Q  57 acaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||||||||||||||||    
T  6485613 acaccgacacttgtaattacactaaattat 6485642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 30299008 - 30298975
Alignment:
Q  53 cacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||||||||||||| ||||||    
T  30299008 cacgacaccgacacttgtaattacactgaattat 30298975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 30327876 - 30327843
Alignment:
Q  53 cacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||||||||||||| ||||||    
T  30327876 cacgacaccgacacttgtaattacactgaattat 30327843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 30838283 - 30838238
Alignment:
Q  41 gtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||  ||||||||||||| |||| |||||||||||||||||    
T  30838283 gtccgacactgacacgacaccgatacttataattacactaaattat 30838238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 11272531 - 11272617
Alignment:
Q  1 tatgaagcacgaatgctcctcggattaggcgtgttccga-tgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||  || ||||||||||||||||||| |||  |||||||||  ||||||||||||||||||||||||||||| ||||||    
T  11272531 tatgaagcacagatactcctcggattaggcgtgtcccgcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattat 11272617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 353
Target Start/End: Original strand, 19272572 - 19272643
Alignment:
Q  282 tgaatcgattcagagaaagtgtgaatcgactaagagactaaaatgggttctgggaatcatttgaagattgaa 353  Q
    ||||||||||||  |||||||||||| || |||| |||||||||| ||| |||| |||||||||||||||||    
T  19272572 tgaatcgattcaacgaaagtgtgaattgattaagggactaaaatgtgttatgggcatcatttgaagattgaa 19272643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 2334313 - 2334278
Alignment:
Q  51 gacacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||||||||||||||||||||||    
T  2334313 gacacgacaccgacacttgtaattacactaaattat 2334278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 24339716 - 24339670
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||  ||||||||||||||||||||||||||||| ||||||    
T  24339716 tgtccgacaccgacacgacaccgacacttgtaattacactgaattat 24339670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 9408333 - 9408365
Alignment:
Q  54 acgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||||||||||||||||||||||||||    
T  9408333 acgacaccgacacttgtaattacactaaattat 9408365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 18039062 - 18039027
Alignment:
Q  51 gacacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||||||||||||||| ||||||    
T  18039062 gacacgacaccgacacttgtaattacactgaattat 18039027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 27945104 - 27945069
Alignment:
Q  51 gacacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||||||||||||||| ||||||    
T  27945104 gacacgacaccgacacttgtaattacactgaattat 27945069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 21560563 - 21560531
Alignment:
Q  54 acgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||||||||||||||||||| ||||||    
T  21560563 acgacaccgacacttgtaattacactgaattat 21560531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 41414946 - 41414910
Alignment:
Q  44 cgacatagacacgacaccgacacttgtaattacacta 80  Q
    |||||| || |||||||||||||||||||||||||||    
T  41414946 cgacatcgatacgacaccgacacttgtaattacacta 41414910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 21395269 - 21395339
Alignment:
Q  16 ctcctcggattaggcgtgttccgatgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    ||||| ||||||||||||| | | |||||||||  ||||||||||||||||||||||||||||||||||||    
T  21395269 ctccttggattaggcgtgtcctggtgtccgacactgacacgacaccgacacttgtaattacactaaattat 21395339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 16766771 - 16766725
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||  ||||||||||||||||||||||||||||| ||||||    
T  16766771 tgtccgacaccgacacgacaccgacacttgtaattacactgaattat 16766725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 9107355 - 9107399
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaatt 84  Q
    |||||||||  ||||||||||||||||||||||||||||| ||||    
T  9107355 tgtccgacaccgacacgacaccgacacttgtaattacactgaatt 9107399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 9911524 - 9911559
Alignment:
Q  51 gacacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||||||||||||||| ||||||    
T  9911524 gacacgacaccgacacttgtaattacactgaattat 9911559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 10770670 - 10770705
Alignment:
Q  51 gacacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||||||||||||||| ||||||    
T  10770670 gacacgacaccgacacttgtaattacactgaattat 10770705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 21513309 - 21513364
Alignment:
Q  178 gagaatagtaatggatgaattcaataaatgggtacaatgaggggaagttatattta 233  Q
    ||||| ||||||| ||||| ||| | ||||||||||||||| ||||||||||||||    
T  21513309 gagaaaagtaatgaatgaaatcagttaatgggtacaatgagtggaagttatattta 21513364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 7930413 - 7930333
Alignment:
Q  7 gcacgaatgctcctcggattaggcgtgttccgatgtccgacata-gacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||  ||||||| ||||||||||| | | |||| ||||   ||||||||||||||||||| |||| |||||||||||    
T  7930413 gcacgaacactcctcgaattaggcgtgtcctggtgtcggacacgtgacacgacaccgacacttgaaatttcactaaattat 7930333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 9522963 - 9522919
Alignment:
Q  42 tccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||  ||||| ||||||||||||||||||||||| ||||||    
T  9522963 tccgacaccgacacaacaccgacacttgtaattacactgaattat 9522919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 18252746 - 18252782
Alignment:
Q  50 agacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||| |||||||| |||||||||||||||||||    
T  18252746 agacacgataccgacacctgtaattacactaaattat 18252782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 2572041 - 2572087
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  2572041 tgtccgacacagacacgacaccgacacttgtaattacactaaattat 2572087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 8343066 - 8343000
Alignment:
Q  20 tcggattaggcgtgttccgatgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||| ||| |||| |||| |   |||||||||||||||||||||||||||||||||    
T  8343066 tcggattaggcgtgtcccggtgtcggacacatgtacgacaccgacacttgtaattacactaaattat 8343000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 20873128 - 20873097
Alignment:
Q  55 cgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||||||||||||||||||    
T  20873128 cgacaccgacacttgtaattacactaaattat 20873097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 15816126 - 15816160
Alignment:
Q  52 acacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||| |||||||||||||||||    
T  15816126 acacgacaccgacacttataattacactaaattat 15816160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 16867202 - 16867236
Alignment:
Q  52 acacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||| |||||||||||||||||    
T  16867202 acacgacaccgacacttataattacactaaattat 16867236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 25566903 - 25566869
Alignment:
Q  52 acacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||||||||||||||||||||| ||||||    
T  25566903 acacgacaccgacacttgtaattacactgaattat 25566869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 8343376 - 8343344
Alignment:
Q  54 acgacaccgacacttgtaattacactaaattat 86  Q
    ||||||| |||||||||||||||||||||||||    
T  8343376 acgacactgacacttgtaattacactaaattat 8343344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 13436926 - 13436985
Alignment:
Q  16 ctcctcggattaggcgtgttccgatgtccgacatagacacgacaccgacacttgtaattac 76  Q
    ||||| ||||||||||||| ||| |||| ||||  |||||||||||||||||||| |||||    
T  13436926 ctccttggattaggcgtgtcccggtgtc-gacaccgacacgacaccgacacttgttattac 13436985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 1509637 - 1509567
Alignment:
Q  16 ctcctcggattaggcgtgttccgatgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||| |||||||||||| ||| |||| ||||  || |||||||||||||||||||||||||||||||||    
T  1509637 ctcctccgattaggcgtgtaccggtgtcggacaccgaaacgacaccgacacttgtaattacactaaattat 1509567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 34185108 - 34185152
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaatt 84  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||    
T  34185108 tgtccgacatggacacgacaccgacacttgtaattacactgaatt 34185152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 14747655 - 14747590
Alignment:
Q  21 cggattaggcgtgttccgatgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||  || |||| || | ||||||||||| ||| |||||||||||||||||||||    
T  14747655 cggattaggcgtgtctcggtgtcggatacagacacgacacggacccttgtaattacactaaattat 14747590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 27505310 - 27505274
Alignment:
Q  50 agacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||||||||||||||||||||||| ||||||    
T  27505310 agacacgacaccgacacttgtaattacacttaattat 27505274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 55401134 - 55401103
Alignment:
Q  55 cgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||||||||||||||||||    
T  55401134 cgacaccgacacttgtaattacactaaattat 55401103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 14209187 - 14209141
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||  |||||||||| |||||||||||||||||| ||||||    
T  14209187 tgtccgacaccgacacgacactgacacttgtaattacactgaattat 14209141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 34910435 - 34910345
Alignment:
Q  1 tatgaagcacgaatgctcctcggattaggcgtgttccg-----atgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||| |  ||||||||||||| ||||| |||     ||||||||||  || ||||||||||| |||||||||||||| ||||||    
T  34910435 tatgaagcacggacactcctcggattagacgtgtcccggtgtcatgtccgacaccgatacgacaccgactcttgtaattacactgaattat 34910345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 21478810 - 21478777
Alignment:
Q  1 tatgaagcacgaatgctcctcggattaggcgtgt 34  Q
    |||||||||| |||||||||||||||||||||||    
T  21478810 tatgaagcacaaatgctcctcggattaggcgtgt 21478777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 28918062 - 28918029
Alignment:
Q  53 cacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||||||||||||| ||||||    
T  28918062 cacgacaccgacacttgtaattacactgaattat 28918029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 6612156 - 6612202
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||    
T  6612156 tgtccgacatcgacacgacaccgacacttgtaattacactgaattat 6612202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 2218302 - 2218267
Alignment:
Q  51 gacacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||||||||||||||||||||||    
T  2218302 gacacgacaccgacacttgtaattacactaaattat 2218267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 113396 - 113327
Alignment:
Q  16 ctcctcggattaggcgtgttccgatgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||||| ||| |||  ||||  ||||||||||| ||||||||||||||||| ||||||    
T  113396 ctcctcggattaggcgtgtcccggtgttggacac-gacacgacacctacacttgtaattacactgaattat 113327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 5376485 - 5376531
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||| |||||||||||||||||| |||||||||| ||||||    
T  5376485 tgtccgacatcgacacgacaccgacacttttaattacactgaattat 5376531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 47989571 - 47989525
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||  ||||||||||||||||||||||||||||| ||||||    
T  47989571 tgtccgacaccgacacgacaccgacacttgtaattacactgaattat 47989525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 86
Target Start/End: Original strand, 22515887 - 22515918
Alignment:
Q  55 cgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||||||||||||||||||    
T  22515887 cgacaccgacacttgtaattacactaaattat 22515918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 86
Target Start/End: Original strand, 22881616 - 22881647
Alignment:
Q  55 cgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||||||||||||||||||    
T  22881616 cgacaccgacacttgtaattacactaaattat 22881647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 24577182 - 24577217
Alignment:
Q  51 gacacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||||||||||||||| ||||||    
T  24577182 gacacgacaccgacacttgtaattacactgaattat 24577217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 86
Target Start/End: Original strand, 41877470 - 41877501
Alignment:
Q  55 cgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||||||||||||||||||    
T  41877470 cgacaccgacacttgtaattacactaaattat 41877501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 86
Target Start/End: Original strand, 46348383 - 46348414
Alignment:
Q  55 cgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||||||||||||||||||    
T  46348383 cgacaccgacacttgtaattacactaaattat 46348414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 46940749 - 46940796
Alignment:
Q  1 tatgaagcacgaatgctcctcggattaggcgtgttccgatgtccgaca 48  Q
    |||||||||||||  ||||||||||||||||||||||| |||| ||||    
T  46940749 tatgaagcacgaacactcctcggattaggcgtgttccggtgtcggaca 46940796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 5944357 - 5944311
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||| ||| |||||||||||||||||| |||||||||| ||||||    
T  5944357 tgtccgtcatcgacacgacaccgacacttataattacactgaattat 5944311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 9629885 - 9629931
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||| |||||||||||||||||| |||| ||||| ||||||    
T  9629885 tgtccgacatcgacacgacaccgacacttataatcacactgaattat 9629931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 15449217 - 15449263
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||  || ||||||| |||||||||||||||||||||||||    
T  15449217 tgtccgacaccgatacgacacagacacttgtaattacactaaattat 15449263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 25272544 - 25272510
Alignment:
Q  52 acacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||| |||||||||||||||||    
T  25272544 acacgacaccgacacttataattacactaaattat 25272510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 28273073 - 28273119
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||| || | |||||||||||||||||||||||| ||||||    
T  28273073 tgtccgacatcgataggacaccgacacttgtaattacactgaattat 28273119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 31694695 - 31694741
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||  ||||||||||||||||||||||||| ||| ||||||    
T  31694695 tgtccgacaccgacacgacaccgacacttgtaattatactgaattat 31694741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 1704951 - 1705023
Alignment:
Q  16 ctcctcggattaggcgtgttccgatgtccgaca--tagacacgacaccgacacttgtaattacactaaattat 86  Q
    ||||| |||||||||||||  || |||| ||||  | |||||||||||||||||||||||||| || ||||||    
T  1704951 ctccttggattaggcgtgtctcggtgtcggacacgttgacacgacaccgacacttgtaattaccctgaattat 1705023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 38078602 - 38078635
Alignment:
Q  1 tatgaagcacgaatgctcctcggattaggcgtgt 34  Q
    |||||||||||||| |||||||||||||||||||    
T  38078602 tatgaagcacgaatactcctcggattaggcgtgt 38078635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 79
Target Start/End: Complemental strand, 17778609 - 17778581
Alignment:
Q  51 gacacgacaccgacacttgtaattacact 79  Q
    |||||||||||||||||||||||||||||    
T  17778609 gacacgacaccgacacttgtaattacact 17778581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 79
Target Start/End: Original strand, 30173758 - 30173786
Alignment:
Q  51 gacacgacaccgacacttgtaattacact 79  Q
    |||||||||||||||||||||||||||||    
T  30173758 gacacgacaccgacacttgtaattacact 30173786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 47989626 - 47989578
Alignment:
Q  1 tatgaagcacgaatgctcctcggattaggcgtgttccgatgtccgacat 49  Q
    ||||||||||| |  ||||||||||||||||||| |||||||| |||||    
T  47989626 tatgaagcacggacactcctcggattaggcgtgtcccgatgtcagacat 47989578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 21351852 - 21351936
Alignment:
Q  2 atgaagcacgaatgctcctcggattaggcgtgttccgatgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||| |  ||| ||||||||| ||||||||  |||| ||||  |||| |||||||||||||||||||||||| ||||||    
T  21351852 atgaagcacggacactcttcggattagacgtgttccagtgtcggacaccgacatgacaccgacacttgtaattacactgaattat 21351936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 19579775 - 19579729
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||  |||||||||||||||||||||||| |||||||||||    
T  19579775 tgtccgacactgacacgacaccgacacttgtaattgcactaaattat 19579729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 21542104 - 21542058
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||  ||||||||||||||||||||||||||||| ||||||    
T  21542104 tgtccgacaccgacacgacaccgacacttgtaattacactgaattat 21542058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 33178084 - 33178053
Alignment:
Q  55 cgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||||||||||||||||||    
T  33178084 cgacaccgacacttgtaattacactaaattat 33178053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 21522824 - 21522778
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||  ||||||||||||||| ||||||||||||| ||||||    
T  21522824 tgtccgacaccgacacgacaccgacaattgtaattacactgaattat 21522778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 21533390 - 21533344
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||  ||||||||||||||| ||||||||||||| ||||||    
T  21533390 tgtccgacaccgacacgacaccgacaattgtaattacactgaattat 21533344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 39698615 - 39698569
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||  |||||||||| |||||||||||||||||| ||||||    
T  39698615 tgtccgacaccgacacgacactgacacttgtaattacactgaattat 39698569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 37328829 - 37328873
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaatt 84  Q
    |||||||||  |||||||||||||||| |||||||||||| ||||    
T  37328829 tgtccgacaccgacacgacaccgacacatgtaattacactgaatt 37328873  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 20539672 - 20539705
Alignment:
Q  53 cacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||||||||||||||||||||    
T  20539672 cacgacaccgacacttgtaattacactaaattat 20539705  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 14996219 - 14996254
Alignment:
Q  51 gacacgacaccgacacttgtaattacactaaattat 86  Q
    |||| |||||||||||||||||||||||||||||||    
T  14996219 gacaagacaccgacacttgtaattacactaaattat 14996254  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 30717515 - 30717561
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||  ||||||||| ||||||||||||||||||| ||||||    
T  30717515 tgtccgacaacgacacgacatcgacacttgtaattacactgaattat 30717561  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 15657937 - 15657892
Alignment:
Q  41 gtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||  |||||||||||||| ||||||||||||| ||||||    
T  15657937 gtccgacatcaacacgacaccgacatttgtaattacactgaattat 15657892  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 23058403 - 23058466
Alignment:
Q  19 ctcggattaggcgtgttccgatgtccgacata---gacacgacaccgacacttgtaattacact 79  Q
    |||||||||||||||| ||| |||| ||||     |||||||||||||||||||||||||||||    
T  23058403 ctcggattaggcgtgtcccggtgtcggacaacaccgacacgacaccgacacttgtaattacact 23058466  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 33153511 - 33153452
Alignment:
Q  24 attaggcgtgttccgatgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    ||||| ||||| |||||||| |||   |||||||||| |||||||||||||||||| ||||||    
T  33153511 attagacgtgtcccgatgtcagac---gacacgacacggacacttgtaattacactgaattat 33153452  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 37419817 - 37419773
Alignment:
Q  40 tgtccgacatagacacgacaccgacacttgtaattacactaaatt 84  Q
    |||||||||  |||||||||||| |||||||||||||||| ||||    
T  37419817 tgtccgacaccgacacgacaccggcacttgtaattacactgaatt 37419773  T

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Target: scaffold0126 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 19235 - 19172
Alignment:
Q  23 gattaggcgtgttccgatgtccgacatagacacgacaccgacacttgtaattacactaaattat 86  Q
    |||||| ||||||||||||||||| |  ||||||||||||||| || |||| ||||| ||||||    
T  19235 gattagacgtgttccgatgtccgatactgacacgacaccgacatttttaatcacactgaattat 19172  T

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Target: scaffold0236 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 25765 - 25799
Alignment:
Q  52 acacgacaccgacacttgtaattacactaaattat 86  Q
    ||||||||||||||||| |||||||||||||||||    
T  25765 acacgacaccgacacttataattacactaaattat 25799  T

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Target: scaffold0025 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 23832 - 23798
Alignment:
Q  52 acacgacaccgacacttgtaattacactaaattat 86  Q
    |||||||||||||||||||||||||||| ||||||    
T  23832 acacgacaccgacacttgtaattacactgaattat 23798  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 86
Target Start/End: Original strand, 17750 - 17780
Alignment:
Q  56 gacaccgacacttgtaattacactaaattat 86  Q
    |||||||||||||||||||||||||||||||    
T  17750 gacaccgacacttgtaattacactaaattat 17780  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 83
Target Start/End: Complemental strand, 8857 - 8829
Alignment:
Q  55 cgacaccgacacttgtaattacactaaat 83  Q
    |||||||||||||||||||||||||||||    
T  8857 cgacaccgacacttgtaattacactaaat 8829  T

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