View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6616_high_5 (Length: 377)
Name: NF6616_high_5
Description: NF6616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6616_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 14 - 362
Target Start/End: Original strand, 36283959 - 36284307
Alignment:
| Q |
14 |
gaaaatagatgaaagtttagatggagagagtattacattggagtccacactatcagaaactcatgcaccaattgcaattcatgaaactgtccaaagagag |
113 |
Q |
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| T |
36283959 |
gaaaatagatgaaaatttagatggagagagtattacattggagtccacactatcagaaactcatgcaccaattgcaattcatgaaactatccaaagagag |
36284058 |
T |
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| Q |
114 |
acagagaatcagcaagattcaaaaacaagcataacaaaaggcaaaaccaccaacgtagtcccattttacaaactcttctcttttgcagactctcttgatc |
213 |
Q |
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| T |
36284059 |
acagagaatcagcaagattcaaaaacaagcataacaaaaggcaaaaccaccaacgtagtcccattttacaaactcttctcttttgcagactctcttgatc |
36284158 |
T |
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| Q |
214 |
atgtattgatgtttgtgggaactattggtgctattggaaatggactggccacacccttgatgaatgtagtcttcggaaatttgattgatgcatttggaag |
313 |
Q |
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| T |
36284159 |
atgtattgatgtttgtgggaactattggtgctattggaaatggactggccacacccttgatgaatgtagtctttggaaatttgattgatgcatttggaag |
36284258 |
T |
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| Q |
314 |
atccacaagccctggagaagtagttcatgatgtttctaaggtacttaat |
362 |
Q |
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| T |
36284259 |
atccacaagccctggagaagtagttcatgatgtttctaaggtacttaat |
36284307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 49739181 - 49739101
Alignment:
| Q |
177 |
ttttacaaactcttctcttttgcagactctcttgatcatgtattgatgtttgtgggaactattggtgctattggaaatgga |
257 |
Q |
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| T |
49739181 |
ttttacaagcttttctcatttgcagactcttgggattatttattgatgtttgttgggactatcggtgctgttgggaatgga |
49739101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 51197233 - 51197310
Alignment:
| Q |
180 |
tacaaactcttctcttttgcagactctcttgatcatgtattgatgtttgtgggaactattggtgctattggaaatgga |
257 |
Q |
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||||| || ||||| ||||| || ||| | |||||| ||||||||||||| || ||| ||||||||||||| |||||| |
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| T |
51197233 |
tacaagcttttctcatttgctgattctttggatcatttattgatgtttgttgggactgttggtgctattgggaatgga |
51197310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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